> top > docs > PMC:3062687 > spans > 1703-2015 > annotations

PMC:3062687 / 1703-2015 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1146 205-210 P23396 denotes NleH1
T1147 277-281 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T919 2-3 NN denotes B
T920 4-13 NN denotes cells6, 8
T921 13-14 -COMMA- denotes ,
T922 15-23 NN denotes cytokine
T923 24-34 NN denotes production
T924 35-37 IN denotes in
T925 38-39 NN denotes T
T926 40-46 NN denotes cells6
T927 46-47 -COMMA- denotes ,
T928 48-51 CC denotes and
T929 52-54 IN denotes in
T930 55-59 NN denotes host
T931 60-67 NN denotes defense
T932 68-75 IN denotes against
T933 76-105 FW denotes enterohemorrhagic Escherichia
T934 106-110 FW denotes coli
T935 111-112 -LRB- denotes (
T936 112-116 NN denotes EHEC
T937 116-117 -RRB- denotes )
T938 117-118 CD denotes 9
T939 120-122 IN denotes In
T940 123-133 JJ denotes particular
T941 133-134 -COMMA- denotes ,
T942 135-141 NNP denotes the E.
T943 142-151 NN denotes coli O157
T944 151-152 -COLON- denotes :
T945 152-154 NN denotes H7
T946 155-159 NN denotes type
T947 160-163 CD denotes III
T948 164-173 NN denotes secretion
T949 174-180 NN denotes system
T950 181-182 -LRB- denotes (
T951 182-186 NN denotes T3SS
T952 186-187 -RRB- denotes )
T953 188-196 NN denotes effector
T954 197-204 NN denotes protein
T955 205-210 NN denotes NleH1
T956 211-222 RB denotes selectively
T957 223-229 VB denotes blocks
T958 230-235 NN denotes NF-κB
T959 236-242 NN denotes target
T960 243-247 NN denotes gene
T961 248-261 NN denotes transcription
T962 262-264 IN denotes by
T963 265-276 VB denotes attenuating
T964 277-281 NN denotes RPS3
T965 282-289 JJ denotes nuclear
T966 290-303 NN denotes translocation
T967 303-304 -COMMA- denotes ,
T968 305-312 IN denotes without
R751 T920 T919 arg1Of "cells6, 8",B
R752 T920 T921 arg1Of "cells6, 8",","
R753 T923 T921 arg2Of production,","
R754 T923 T922 arg1Of production,cytokine
R755 T923 T924 arg1Of production,in
R756 T926 T924 arg2Of cells6,in
R757 T926 T925 arg1Of cells6,T
R758 T928 T927 arg1Of and,","
R759 T929 T928 arg2Of in,and
R760 T931 T929 arg2Of defense,in
R761 T931 T930 arg1Of defense,host
R762 T931 T932 arg1Of defense,against
R763 T934 T932 arg2Of coli,against
R764 T934 T933 arg1Of coli,enterohemorrhagic Escherichia
R765 T934 T935 arg1Of coli,(
R766 T936 T935 arg2Of EHEC,(
R767 T937 T935 arg3Of ),(
R768 T940 T939 arg2Of particular,In
R769 T943 T942 arg1Of coli O157,the E.
R770 T943 T944 arg1Of coli O157,:
R771 T949 T944 arg2Of system,:
R772 T949 T945 arg1Of system,H7
R773 T949 T946 arg1Of system,type
R774 T949 T947 arg1Of system,III
R775 T949 T948 arg1Of system,secretion
R776 T949 T950 arg1Of system,(
R777 T951 T950 arg2Of T3SS,(
R778 T952 T950 arg3Of ),(
R779 T955 T953 arg1Of NleH1,effector
R780 T955 T954 arg1Of NleH1,protein
R781 T955 T957 arg1Of NleH1,blocks
R782 T955 T963 arg1Of NleH1,attenuating
R783 T957 T939 arg1Of blocks,In
R784 T957 T941 arg1Of blocks,","
R785 T957 T943 arg1Of blocks,coli O157
R786 T957 T956 arg1Of blocks,selectively
R787 T957 T962 arg1Of blocks,by
R788 T960 T958 arg1Of gene,NF-κB
R789 T960 T959 arg1Of gene,target
R790 T961 T957 arg2Of transcription,blocks
R791 T961 T960 arg1Of transcription,gene
R792 T963 T962 arg2Of attenuating,by
R793 T963 T967 arg1Of attenuating,","
R794 T963 T968 arg1Of attenuating,without
R795 T966 T963 arg2Of translocation,attenuating
R796 T966 T964 arg1Of translocation,RPS3
R797 T966 T965 arg1Of translocation,nuclear

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1292 2-3 NNP denotes B
T1293 4-10 CD denotes cells6
T1294 10-13 CD denotes , 8
T1295 13-14 , denotes ,
T1296 15-23 NN denotes cytokine
T1297 24-34 NN denotes production
T1298 35-37 IN denotes in
T1299 38-39 NNP denotes T
T1300 40-46 CD denotes cells6
T1301 46-47 , denotes ,
T1302 48-51 CC denotes and
T1303 52-54 IN denotes in
T1304 55-59 NN denotes host
T1305 60-67 NN denotes defense
T1306 68-75 IN denotes against
T1307 76-105 NNP denotes enterohemorrhagic Escherichia
T1308 106-110 NNS denotes coli
T1309 111-112 -LRB- denotes (
T1310 112-116 NNP denotes EHEC
T1311 116-117 -RRB- denotes )
T1312 117-118 CD denotes 9
T1313 118-119 . denotes .
T1314 120-122 IN denotes In
T1315 123-133 JJ denotes particular
T1316 133-134 , denotes ,
T1317 135-140 NNP denotes the E
T1318 140-141 . denotes .
T1319 142-151 NNP denotes coli O157
T1320 151-152 : denotes :
T1321 152-154 NNP denotes H7
T1322 155-159 NN denotes type
T1323 160-163 NNP denotes III
T1324 164-173 NN denotes secretion
T1325 174-180 NN denotes system
T1326 181-182 -LRB- denotes (
T1327 182-186 CD denotes T3SS
T1328 186-187 -RRB- denotes )
T1329 188-196 NN denotes effector
T1330 197-204 NN denotes protein
T1331 205-210 NNP denotes NleH1
T1332 211-222 RB denotes selectively
T1333 223-229 NNS denotes blocks
T1334 230-235 JJ denotes NF-κB
T1335 236-242 NN denotes target
T1336 243-247 NN denotes gene
T1337 248-261 NN denotes transcription
T1338 262-264 IN denotes by
T1339 265-276 VBG denotes attenuating
T1340 277-281 JJ denotes RPS3
T1341 282-289 JJ denotes nuclear
T1342 290-303 NN denotes translocation
T1343 303-304 , denotes ,
T1344 305-312 IN denotes without
R1095 T1293 T1292 nummod cells6,B
R1096 T1294 T1292 appos ", 8",B
R1098 T1296 T1297 compound cytokine,production
R1100 T1298 T1297 prep in,production
R1101 T1299 T1298 pobj T,in
R1102 T1300 T1299 appos cells6,T
R1103 T1301 T1297 punct ",",production
R1106 T1304 T1305 compound host,defense
R1107 T1305 T1303 pobj defense,in
R1108 T1306 T1305 prep against,defense
R1109 T1307 T1308 compound enterohemorrhagic Escherichia,coli
R1110 T1308 T1306 pobj coli,against
R1111 T1309 T1310 punct (,EHEC
R1112 T1310 T1308 appos EHEC,coli
R1113 T1311 T1312 punct ),9
R1114 T1312 T1312 ROOT 9,9
R1115 T1313 T1312 punct .,9
R1116 T1314 T1317 prep In,the E
R1117 T1315 T1314 amod particular,In
R1118 T1316 T1317 punct ",",the E
R1119 T1317 T1317 ROOT the E,the E
R1120 T1318 T1317 punct .,the E
R1121 T1319 T1319 ROOT coli O157,coli O157
R1122 T1320 T1319 punct :,coli O157
R1123 T1321 T1325 compound H7,system
R1124 T1322 T1325 compound type,system
R1125 T1323 T1325 compound III,system
R1126 T1324 T1325 compound secretion,system
R1127 T1325 T1325 ROOT system,system
R1128 T1326 T1325 punct (,system
R1129 T1327 T1325 appos T3SS,system
R1130 T1328 T1325 punct ),system
R1131 T1329 T1330 compound effector,protein
R1132 T1330 T1333 compound protein,blocks
R1133 T1331 T1333 nsubj NleH1,blocks
R1134 T1332 T1333 advmod selectively,blocks
R1135 T1333 T1333 ROOT blocks,blocks
R1136 T1334 T1337 compound NF-κB,transcription
R1137 T1335 T1336 compound target,gene
R1138 T1336 T1337 compound gene,transcription
R1139 T1337 T1333 dobj transcription,blocks
R1140 T1338 T1333 prep by,blocks
R1141 T1339 T1338 pcomp attenuating,by
R1142 T1340 T1342 amod RPS3,translocation
R1143 T1341 T1342 amod nuclear,translocation
R1144 T1342 T1339 dobj translocation,attenuating
R1145 T1343 T1333 punct ",",blocks
R1146 T1344 T1333 prep without,blocks

GO-BP

Id Subject Object Predicate Lexical cue
T1585 248-261 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1589 15-34 http://purl.obolibrary.org/obo/GO_0001816 denotes cytokine production
T1590 164-173 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T1591 248-276 http://purl.obolibrary.org/obo/GO_0031555 denotes transcription by attenuating

GO-CC

Id Subject Object Predicate Lexical cue
T1610 55-59 http://purl.obolibrary.org/obo/GO_0018995 denotes host

events-check-again

Id Subject Object Predicate Lexical cue
T1847 205-210 Protein denotes NleH1
T1848 265-276 Negative_regulation denotes attenuating
T1849 277-281 Protein denotes RPS3
T1850 282-289 Entity denotes nuclear
T1851 290-303 Localization denotes translocation
R1476 T1847 T1848 causeOf NleH1,attenuating
R1478 T1849 T1851 themeOf RPS3,translocation
R1480 T1850 T1851 locationOf nuclear,translocation
R1481 T1851 T1848 themeOf translocation,attenuating

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T1635 205-210 Protein denotes NleH1
T1636 230-235 Protein denotes NF-κB
T1637 277-281 Protein denotes RPS3
T1640 164-173 Localization denotes secretion
T1641 248-261 Transcription denotes transcription
T1642 282-289 Entity denotes nuclear
T1643 290-303 Localization denotes translocation
T1644 265-276 Negative_regulation denotes attenuating
R1377 T1635 T1640 themeOf NleH1,secretion
R1378 T1636 T1641 themeOf NF-κB,transcription
R1379 T1637 T1643 themeOf RPS3,translocation
R1382 T1642 T1643 locationOf nuclear,translocation
R1383 T1643 T1644 themeOf translocation,attenuating

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T742 205-210 Protein denotes NleH1
T743 265-276 Negative_regulation denotes attenuating
T744 277-281 Protein denotes RPS3
T745 282-289 Entity denotes nuclear
T746 290-303 Localization denotes translocation
R598 T742 T743 causeOf NleH1,attenuating
R599 T744 T746 themeOf RPS3,translocation
R600 T745 T746 locationOf nuclear,translocation
R601 T746 T743 themeOf translocation,attenuating

test2

Id Subject Object Predicate Lexical cue
T689 205-210 Protein denotes NleH1
T690 265-276 Negative_regulation denotes attenuating
T691 277-281 Protein denotes RPS3
T692 282-289 Entity denotes nuclear
T693 290-303 Localization denotes translocation
R564 T689 T690 causeOf NleH1,attenuating
R566 T691 T693 themeOf RPS3,translocation
R567 T692 T693 locationOf nuclear,translocation
R568 T693 T690 themeOf translocation,attenuating