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PMC:2817507 / 394-736 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T272 337-339 IN denotes of
T271 328-336 NN denotes activity
T270 324-327 DT denotes the
T269 320-323 CC denotes and
T268 318-319 -COMMA- denotes ,
T267 317-318 -RRB- denotes )
T266 311-317 NN denotes p-IκBα
T265 310-311 -LRB- denotes (
T264 308-309 NN denotes B
T263 302-307 NN denotes kappa
T262 299-301 IN denotes of
T261 288-298 NN denotes inhibitors
T260 285-287 IN denotes of
T259 269-284 NN denotes phosphorylation
T258 265-268 DT denotes the
T257 263-264 -COMMA- denotes ,
T256 256-263 NN denotes protein
T255 252-255 CC denotes and
T254 247-251 NN denotes mRNA
T253 242-246 NN denotes TLR4
T252 237-240 NN denotes ICH
T251 231-236 IN denotes after
T250 226-230 NN denotes rats
T249 219-225 NNP denotes Wistar
T248 216-218 IN denotes of
T247 208-215 NN denotes tissues
T246 202-207 NN denotes brain
T245 199-201 IN denotes in
T244 189-198 NN denotes signaling
T243 184-188 NN denotes NFκB
T242 170-183 JJ denotes TLR4-mediated
T241 167-169 IN denotes of
T240 156-166 NN denotes activation
T239 152-155 DT denotes the
T238 148-151 CC denotes and
T237 143-147 NN denotes TLR4
T236 140-142 IN denotes of
T235 129-139 NN denotes expression
T234 125-128 DT denotes the
T233 122-124 IN denotes of
T232 114-121 NN denotes profile
T231 105-113 JJ denotes temporal
T230 101-104 DT denotes the
T229 92-100 VB denotes evaluate
T228 89-91 TO denotes to
T227 85-88 VB denotes was
T226 79-84 NN denotes study
T225 71-78 JJ denotes present
T224 67-70 DT denotes The
T223 58-65 JJ denotes unknown
T222 50-57 VB denotes remains
T221 46-49 NN denotes ICH
T220 43-45 IN denotes of
T219 30-42 NN denotes pathogenesis
T218 26-29 DT denotes the
T217 23-25 IN denotes in
T216 13-22 NN denotes signaling
T215 8-12 NN denotes NFκB
R83 T216 T215 arg1Of signaling,NFκB
R84 T219 T217 arg2Of pathogenesis,in
R85 T219 T218 arg1Of pathogenesis,the
R86 T219 T220 arg1Of pathogenesis,of
R87 T221 T220 arg2Of ICH,of
R90 T223 T222 arg2Of unknown,remains
R91 T226 T224 arg1Of study,The
R92 T226 T225 arg1Of study,present
R93 T226 T227 arg1Of study,was
R94 T229 T227 arg2Of evaluate,was
R95 T229 T228 arg1Of evaluate,to
R96 T232 T230 arg1Of profile,the
R97 T232 T231 arg1Of profile,temporal
R98 T232 T233 arg1Of profile,of
R99 T232 T238 arg1Of profile,and
R100 T235 T233 arg2Of expression,of
R101 T235 T234 arg1Of expression,the
R102 T235 T236 arg1Of expression,of
R103 T237 T236 arg2Of TLR4,of
R104 T238 T229 arg2Of and,evaluate
R105 T240 T238 arg2Of activation,and
R106 T240 T239 arg1Of activation,the
R107 T240 T241 arg1Of activation,of
R108 T240 T245 arg1Of activation,in
R109 T244 T241 arg2Of signaling,of
R110 T244 T242 arg1Of signaling,TLR4-mediated
R111 T244 T243 arg1Of signaling,NFκB
R112 T247 T245 arg2Of tissues,in
R113 T247 T246 arg1Of tissues,brain
R114 T247 T248 arg1Of tissues,of
R115 T250 T248 arg2Of rats,of
R116 T250 T249 arg1Of rats,Wistar
R117 T250 T251 arg1Of rats,after
R118 T252 T251 arg2Of ICH,after
R119 T254 T255 arg1Of mRNA,and
R120 T255 T253 arg1Of and,TLR4
R121 T255 T257 arg1Of and,","
R122 T255 T269 arg1Of and,and
R123 T256 T255 arg2Of protein,and
R124 T259 T257 arg2Of phosphorylation,","
R125 T259 T258 arg1Of phosphorylation,the
R126 T259 T260 arg1Of phosphorylation,of
R127 T261 T260 arg2Of inhibitors,of
R128 T261 T262 arg1Of inhibitors,of
R129 T264 T262 arg2Of B,of
R130 T264 T263 arg1Of B,kappa
R131 T264 T265 arg1Of B,(
R132 T266 T265 arg2Of p-IκBα,(
R133 T267 T265 arg3Of ),(
R134 T269 T268 arg1Of and,","
R137 T271 T269 arg2Of activity,and
R138 T271 T270 arg1Of activity,the
R139 T271 T272 arg1Of activity,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T94 143-147 Protein denotes TLR4
T95 170-174 Protein denotes TLR4
T96 242-246 Protein denotes TLR4
T97 288-309 Protein denotes inhibitors of kappa B
T98 313-317 Protein denotes IκBα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T627 143-147 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T628 170-174 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T629 242-246 http://www.uniprot.org/uniprot/O00206 denotes TLR4

UBERON-AE

Id Subject Object Predicate Lexical cue
T61 208-215 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T58 202-207 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain

GO-BP

Id Subject Object Predicate Lexical cue
T105 30-42 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T108 13-22 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T109 189-198 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T117 256-284 http://purl.obolibrary.org/obo/GO_0006468 denotes protein, the phosphorylation
T118 269-284 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T67 67-241 Sentence denotes The present study was to evaluate the temporal profile of the expression of TLR4 and the activation of TLR4-mediated NFκB signaling in brain tissues of Wistar rats after ICH.
T6 67-241 Sentence denotes The present study was to evaluate the temporal profile of the expression of TLR4 and the activation of TLR4-mediated NFκB signaling in brain tissues of Wistar rats after ICH.

simple1

Id Subject Object Predicate Lexical cue
T151 313-317 Protein denotes IκBα
T150 288-309 Protein denotes inhibitors of kappa B
T149 242-246 Protein denotes TLR4
T148 170-174 Protein denotes TLR4
T147 143-147 Protein denotes TLR4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T734 269-284 Phosphorylation denotes phosphorylation
T733 129-139 Gene_expression denotes expression
T729 313-317 Protein denotes IκBα
T728 288-309 Protein denotes inhibitors of kappa B
T727 242-246 Protein denotes TLR4
T726 170-174 Protein denotes TLR4
T725 143-147 Protein denotes TLR4
R509 T725 T733 themeOf TLR4,expression
R510 T727 T734 themeOf TLR4,phosphorylation
R511 T728 T734 themeOf inhibitors of kappa B,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T636 143-147 Protein denotes TLR4
T637 170-174 Protein denotes TLR4
T638 242-246 Protein denotes TLR4
T639 288-309 Protein denotes inhibitors of kappa B
T640 313-317 Protein denotes IκBα
T645 129-139 Gene_expression denotes expression
T646 269-284 Phosphorylation denotes phosphorylation
R529 T636 T645 themeOf TLR4,expression
R530 T638 T646 themeOf TLR4,phosphorylation
R531 T639 T646 themeOf inhibitors of kappa B,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T690 269-284 Phosphorylation denotes phosphorylation
T689 129-139 Gene_expression denotes expression
T685 313-317 Protein denotes IκBα
T684 288-309 Protein denotes inhibitors of kappa B
T683 242-246 Protein denotes TLR4
T682 170-174 Protein denotes TLR4
T681 143-147 Protein denotes TLR4
R491 T681 T689 themeOf TLR4,expression
R492 T683 T690 themeOf TLR4,phosphorylation
R493 T684 T690 themeOf inhibitors of kappa B,phosphorylation
R494 T685 T690 themeOf IκBα,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T771 167-230 Positive_regulation denotes of TLR4-mediated NFκB signaling in brain tissues of Wistar rats
T769 167-230 Regulation denotes of TLR4-mediated NFκB signaling in brain tissues of Wistar rats
T766 125-147 Gene_expression denotes the expression of TLR4
T762 140-147 Protein denotes of TLR4
T758 311-317 Protein denotes p-IκBα
T754 256-263 Protein denotes protein
T752 288-319 Protein denotes inhibitors of kappa B (p-IκBα),
T751 170-183 Protein denotes TLR4-mediated
T747 242-246 Protein denotes TLR4
T740 184-188 Protein denotes NFκB
T741 8-12 Protein denotes NFκB
T742 242-251 Protein denotes TLR4 mRNA
R519 T751 T769 causeOf TLR4-mediated,of TLR4-mediated NFκB signaling in brain tissues of Wistar rats
R522 T762 T766 themeOf of TLR4,the expression of TLR4
R524 T771 T769 themeOf of TLR4-mediated NFκB signaling in brain tissues of Wistar rats,of TLR4-mediated NFκB signaling in brain tissues of Wistar rats
R540 T740 T771 causeOf NFκB,of TLR4-mediated NFκB signaling in brain tissues of Wistar rats

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T507 337-339 IN denotes of
T506 328-336 NN denotes activity
T505 324-327 DT denotes the
T504 320-323 CC denotes and
T503 318-319 , denotes ,
T502 317-318 -RRB- denotes )
T501 311-317 NNP denotes p-IκBα
T500 310-311 -LRB- denotes (
T499 308-309 NNP denotes B
T498 302-307 NN denotes kappa
T497 299-301 IN denotes of
T496 288-298 NNS denotes inhibitors
T495 285-287 IN denotes of
T494 269-284 NN denotes phosphorylation
T493 265-268 DT denotes the
T492 263-264 , denotes ,
T491 256-263 NN denotes protein
T490 252-255 CC denotes and
T489 247-251 NNP denotes mRNA
T488 242-246 CD denotes TLR4
T487 240-241 . denotes .
T486 237-240 NNP denotes ICH
T485 231-236 IN denotes after
T484 226-230 NNS denotes rats
T483 219-225 NNP denotes Wistar
T482 216-218 IN denotes of
T481 208-215 NNS denotes tissues
T480 202-207 NN denotes brain
T479 199-201 IN denotes in
T478 189-198 VBG denotes signaling
T477 184-188 NNP denotes NFκB
T476 170-183 JJ denotes TLR4-mediated
T475 167-169 IN denotes of
T474 156-166 NN denotes activation
T473 152-155 DT denotes the
T472 148-151 CC denotes and
T471 143-147 CD denotes TLR4
T470 140-142 IN denotes of
T469 129-139 NN denotes expression
T468 125-128 DT denotes the
T467 122-124 IN denotes of
T466 114-121 NN denotes profile
T465 105-113 JJ denotes temporal
T464 101-104 DT denotes the
T463 92-100 VB denotes evaluate
T462 89-91 TO denotes to
T461 85-88 VBD denotes was
T460 79-84 NN denotes study
T459 71-78 JJ denotes present
T458 67-70 DT denotes The
T457 65-66 . denotes .
T456 58-65 JJ denotes unknown
T455 50-57 VBZ denotes remains
T454 46-49 NNP denotes ICH
T453 43-45 IN denotes of
T452 30-42 NN denotes pathogenesis
T451 26-29 DT denotes the
T450 23-25 IN denotes in
T449 13-22 VBG denotes signaling
T448 8-12 NNP denotes NFκB
R317 T450 T449 prep in,signaling
R318 T451 T452 det the,pathogenesis
R319 T452 T450 pobj pathogenesis,in
R320 T453 T452 prep of,pathogenesis
R321 T454 T453 pobj ICH,of
R322 T455 T455 ROOT remains,remains
R323 T456 T455 acomp unknown,remains
R324 T457 T455 punct .,remains
R325 T458 T460 det The,study
R326 T459 T460 amod present,study
R327 T460 T461 nsubj study,was
R328 T461 T461 ROOT was,was
R329 T462 T463 aux to,evaluate
R330 T463 T461 xcomp evaluate,was
R331 T464 T466 det the,profile
R332 T465 T466 amod temporal,profile
R333 T466 T463 dobj profile,evaluate
R334 T467 T466 prep of,profile
R335 T468 T469 det the,expression
R336 T469 T467 pobj expression,of
R337 T470 T469 prep of,expression
R338 T471 T470 pobj TLR4,of
R339 T472 T469 cc and,expression
R340 T473 T474 det the,activation
R341 T474 T469 conj activation,expression
R342 T475 T474 prep of,activation
R343 T476 T477 compound TLR4-mediated,NFκB
R344 T477 T475 pobj NFκB,of
R345 T478 T466 acl signaling,profile
R346 T479 T478 prep in,signaling
R347 T480 T481 compound brain,tissues
R348 T481 T479 pobj tissues,in
R349 T482 T481 prep of,tissues
R350 T483 T484 compound Wistar,rats
R351 T484 T482 pobj rats,of
R352 T485 T463 prep after,evaluate
R353 T486 T485 pobj ICH,after
R354 T487 T461 punct .,was
R355 T488 T489 nummod TLR4,mRNA
R357 T490 T489 cc and,mRNA
R358 T491 T489 conj protein,mRNA
R359 T492 T491 punct ",",protein
R360 T493 T494 det the,phosphorylation
R361 T494 T491 appos phosphorylation,protein
R362 T495 T494 prep of,phosphorylation
R363 T496 T495 pobj inhibitors,of
R364 T497 T496 prep of,inhibitors
R365 T498 T499 compound kappa,B
R366 T499 T497 pobj B,of
R367 T500 T499 punct (,B
R368 T501 T499 appos p-IκBα,B
R369 T502 T499 punct ),B
R370 T503 T494 punct ",",phosphorylation
R371 T504 T494 cc and,phosphorylation
R372 T505 T506 det the,activity
R373 T506 T494 conj activity,phosphorylation
R374 T507 T506 prep of,activity

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T132 269-284 Phosphorylation denotes phosphorylation
T130 242-251 Protein denotes TLR4 mRNA
T129 129-139 Gene_expression denotes expression
T128 184-188 Protein denotes NFκB
T127 170-174 Protein denotes TLR4
T126 143-147 Protein denotes TLR4
T125 8-12 Protein denotes NFκB
R18 T126 T129 themeOf TLR4,expression
R19 T130 T132 themeOf TLR4 mRNA,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T25 129-139 Gene_expression denotes expression
T21 313-317 Protein denotes IκBα
T20 288-309 Protein denotes inhibitors of kappa B
T19 242-246 Protein denotes TLR4
T18 170-174 Protein denotes TLR4
T17 143-147 Protein denotes TLR4
R2 T17 T25 themeOf TLR4,expression
R3 T21 T20 equivalentTo IκBα,inhibitors of kappa B

test3

Id Subject Object Predicate Lexical cue
T37 313-317 Protein denotes IκBα
T36 288-309 Protein denotes inhibitors of kappa B
T35 242-246 Protein denotes TLR4
T34 170-174 Protein denotes TLR4
T33 143-147 Protein denotes TLR4
T50 313-317 Protein denotes IκBα
T49 288-309 Protein denotes inhibitors of kappa B
T48 242-246 Protein denotes TLR4
T47 170-174 Protein denotes TLR4
T46 143-147 Protein denotes TLR4
T45 129-139 Gene_expression denotes expression
R5 T46 T45 themeOf TLR4,expression
R6 T50 T49 equivalentTo IκBα,inhibitors of kappa B