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PMC:2806624 / 47952-48243 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T23681 136-149 NN denotes transcription
T23682 150-152 IN denotes of
T23683 153-158 JJ denotes human
T23684 159-166 NN denotes samples
T23685 167-170 VB denotes was
T23686 171-180 VB denotes performed
T23687 181-185 IN denotes with
T23688 186-207 NN denotes reverse-transcription
T23689 208-216 NN denotes reagents
T23690 217-218 -LRB- denotes (
T23691 218-227 NN denotes Fermentas
T23692 227-228 -RRB- denotes )
T23693 229-233 IN denotes with
T23694 234-240 JJ denotes random
T23695 241-249 NN denotes hexamers
T23696 250-259 VB denotes according
T23697 260-262 TO denotes to
T23698 263-266 DT denotes the
T23699 267-279 NN denotes manufacturer
T23700 279-281 POS denotes 's
T23701 282-290 NN denotes protocol
T23658 0-3 NN denotes RNA
T23659 4-13 NN denotes isolation
T23660 14-17 CC denotes and
T23661 18-22 NN denotes cDNA
T23662 23-32 NN denotes synthesis
T23663 34-37 NN denotes RNA
T23664 38-41 VB denotes was
T23665 42-50 VB denotes isolated
T23666 51-56 VB denotes using
T23667 57-60 DT denotes the
T23668 61-67 NNP denotes RNeasy
T23669 68-72 NNP denotes Mini
T23670 73-76 NN denotes kit
T23671 77-78 -LRB- denotes (
T23672 78-84 NN denotes QIAGEN
T23673 84-85 -RRB- denotes )
T23674 86-95 VB denotes according
T23675 96-98 TO denotes to
T23676 99-102 DT denotes the
T23677 103-115 NN denotes manufacturer
T23678 115-117 POS denotes 's
T23679 118-126 NN denotes protocol
T23680 128-135 JJ denotes Reverse
R18310 T23659 T23658 arg1Of isolation,RNA
R18311 T23659 T23660 arg1Of isolation,and
R18312 T23662 T23660 arg2Of synthesis,and
R18313 T23662 T23661 arg1Of synthesis,cDNA
R18314 T23663 T23664 arg1Of RNA,was
R18315 T23663 T23665 arg2Of RNA,isolated
R18316 T23665 T23664 arg2Of isolated,was
R18317 T23666 T23665 arg3Of using,isolated
R18318 T23666 T23674 arg1Of using,according
R18319 T23669 T23668 arg1Of Mini,RNeasy
R18320 T23670 T23666 arg2Of kit,using
R18321 T23670 T23667 arg1Of kit,the
R18322 T23670 T23669 arg1Of kit,Mini
R18323 T23670 T23671 arg1Of kit,(
R18324 T23672 T23671 arg2Of QIAGEN,(
R18325 T23673 T23671 arg3Of ),(
R18326 T23675 T23674 arg2Of to,according
R18327 T23677 T23676 arg1Of manufacturer,the
R18328 T23677 T23678 arg2Of manufacturer,'s
R18329 T23679 T23675 arg2Of protocol,to
R18330 T23679 T23678 arg1Of protocol,'s
R18331 T23681 T23680 arg1Of transcription,Reverse
R18332 T23681 T23682 arg1Of transcription,of
R18333 T23681 T23685 arg1Of transcription,was
R18334 T23681 T23686 arg2Of transcription,performed
R18335 T23684 T23682 arg2Of samples,of
R18336 T23684 T23683 arg1Of samples,human
R18337 T23686 T23685 arg2Of performed,was
R18338 T23686 T23687 arg1Of performed,with
R18340 T23689 T23687 arg2Of reagents,with
R18341 T23689 T23688 arg1Of reagents,reverse-transcription
R18342 T23689 T23690 arg1Of reagents,(
R18344 T23691 T23690 arg2Of Fermentas,(
R18339 T23686 T23696 arg1Of performed,according
R18343 T23689 T23693 arg1Of reagents,with
R18345 T23692 T23690 arg3Of ),(
R18346 T23695 T23693 arg2Of hexamers,with
R18347 T23695 T23694 arg1Of hexamers,random
R18348 T23697 T23696 arg2Of to,according
R18349 T23699 T23698 arg1Of manufacturer,the
R18350 T23699 T23700 arg2Of manufacturer,'s
R18351 T23701 T23697 arg2Of protocol,to
R18352 T23701 T23700 arg1Of protocol,'s

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23705 0-3 NNP denotes RNA
T23706 4-13 NN denotes isolation
T23707 14-17 CC denotes and
T23708 18-22 NNP denotes cDNA
T23709 23-32 NN denotes synthesis
T23710 32-33 . denotes .
T23711 34-37 NNP denotes RNA
T23712 38-41 VBD denotes was
T23713 42-50 VBN denotes isolated
T23714 51-56 VBG denotes using
T23715 57-60 DT denotes the
T23716 61-67 NNP denotes RNeasy
T23717 68-72 NNP denotes Mini
T23718 73-76 NN denotes kit
T23719 77-78 -LRB- denotes (
T23720 78-84 NNP denotes QIAGEN
T23721 84-85 -RRB- denotes )
T23722 86-95 VBG denotes according
T23723 96-98 TO denotes to
T23724 99-102 DT denotes the
T23725 103-115 NN denotes manufacturer
T23726 115-117 POS denotes 's
T23727 118-126 NN denotes protocol
T23728 126-127 . denotes .
T23729 128-135 VB denotes Reverse
T23730 136-149 NN denotes transcription
T23731 150-152 IN denotes of
T23732 153-158 JJ denotes human
T23733 159-166 NNS denotes samples
T23734 167-170 VBD denotes was
T23735 171-180 VBN denotes performed
T23736 181-185 IN denotes with
T23737 186-207 JJ denotes reverse-transcription
T23738 208-216 NNS denotes reagents
T23739 217-218 -LRB- denotes (
T23740 218-227 NNP denotes Fermentas
T23741 227-228 -RRB- denotes )
T23742 229-233 IN denotes with
T23743 234-240 JJ denotes random
T23744 241-249 NNS denotes hexamers
T23745 250-259 VBG denotes according
T23746 260-262 TO denotes to
T23747 263-266 DT denotes the
T23748 267-279 NN denotes manufacturer
T23749 279-281 POS denotes 's
T23750 282-290 NN denotes protocol
T23751 290-291 . denotes .
R18353 T23705 T23706 compound RNA,isolation
R18354 T23706 T23706 ROOT isolation,isolation
R18355 T23707 T23706 cc and,isolation
R18356 T23708 T23709 compound cDNA,synthesis
R18357 T23709 T23706 conj synthesis,isolation
R18358 T23710 T23706 punct .,isolation
R18359 T23711 T23713 nsubjpass RNA,isolated
R18360 T23712 T23713 auxpass was,isolated
R18361 T23713 T23713 ROOT isolated,isolated
R18362 T23714 T23713 advcl using,isolated
R18363 T23715 T23718 det the,kit
R18364 T23716 T23717 compound RNeasy,Mini
R18365 T23717 T23718 compound Mini,kit
R18366 T23718 T23714 dobj kit,using
R18367 T23719 T23718 punct (,kit
R18368 T23720 T23718 appos QIAGEN,kit
R18369 T23721 T23718 punct ),kit
R18370 T23722 T23713 prep according,isolated
R18371 T23723 T23722 prep to,according
R18372 T23724 T23725 det the,manufacturer
R18373 T23725 T23727 poss manufacturer,protocol
R18374 T23726 T23725 case 's,manufacturer
R18375 T23727 T23723 pobj protocol,to
R18376 T23728 T23713 punct .,isolated
R18377 T23729 T23729 ROOT Reverse,Reverse
R18378 T23730 T23735 nsubjpass transcription,performed
R18379 T23731 T23730 prep of,transcription
R18380 T23732 T23733 amod human,samples
R18381 T23733 T23731 pobj samples,of
R18382 T23734 T23735 auxpass was,performed
R18383 T23735 T23729 ccomp performed,Reverse
R18384 T23736 T23735 prep with,performed
R18385 T23737 T23738 amod reverse-transcription,reagents
R18386 T23738 T23736 pobj reagents,with
R18387 T23739 T23740 punct (,Fermentas
R18388 T23740 T23738 appos Fermentas,reagents
R18389 T23741 T23735 punct ),performed
R18390 T23742 T23735 prep with,performed
R18391 T23743 T23744 amod random,hexamers
R18392 T23744 T23742 pobj hexamers,with
R18393 T23745 T23729 prep according,Reverse
R18394 T23746 T23745 prep to,according
R18395 T23747 T23748 det the,manufacturer
R18396 T23748 T23750 poss manufacturer,protocol
R18397 T23749 T23748 case 's,manufacturer
R18398 T23750 T23746 pobj protocol,to
R18399 T23751 T23729 punct .,Reverse

GO-BP

Id Subject Object Predicate Lexical cue
T23752 23-32 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T23753 23-37 http://purl.obolibrary.org/obo/GO_0032774 denotes synthesis. RNA
T23754 128-149 http://purl.obolibrary.org/obo/GO_0001171 denotes Reverse transcription
T23755 186-207 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse-transcription
T23756 136-149 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T23757 194-207 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T23655 0-33 Sentence denotes RNA isolation and cDNA synthesis.
T23656 34-127 Sentence denotes RNA was isolated using the RNeasy Mini kit (QIAGEN) according to the manufacturer's protocol.
T23657 128-291 Sentence denotes Reverse transcription of human samples was performed with reverse-transcription reagents (Fermentas) with random hexamers according to the manufacturer's protocol.
T329 0-33 Sentence denotes RNA isolation and cDNA synthesis.
T330 34-127 Sentence denotes RNA was isolated using the RNeasy Mini kit (QIAGEN) according to the manufacturer's protocol.
T331 128-291 Sentence denotes Reverse transcription of human samples was performed with reverse-transcription reagents (Fermentas) with random hexamers according to the manufacturer's protocol.