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PMC:2800179 / 1146-1392 JSONTXT

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GO-CC

Id Subject Object Predicate Lexical cue
T604 127-132 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T606 39-47 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T607 39-47 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

GO-MF

Id Subject Object Predicate Lexical cue
T599 39-47 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-BP

Id Subject Object Predicate Lexical cue
T586 222-230 http://purl.obolibrary.org/obo/GO_0009056 denotes degraded
T589 95-104 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T598 167-183 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T269 8-10 IN denotes by
T270 11-21 NN denotes incubation
T271 22-26 IN denotes with
T272 27-38 JJ denotes anti-ICAM-1
T273 39-47 NN denotes antibody
T274 49-56 RB denotes Finally
T275 56-57 -COMMA- denotes ,
T276 58-62 NN denotes dCGN
T277 63-73 VB denotes stimulated
T278 74-79 NN denotes TNF-α
T279 80-90 NN denotes expression
T280 91-94 CC denotes and
T281 95-104 NN denotes secretion
T282 105-107 IN denotes by
T283 108-112 CC denotes both
T284 113-116 NN denotes PBM
T285 117-120 CC denotes and
T286 121-126 NN denotes THP-1
T287 127-132 NN denotes cells
T288 134-137 PDT denotes All
T289 138-143 DT denotes these
T290 144-151 NN denotes effects
T291 152-156 VB denotes were
T292 157-163 VB denotes linked
T293 164-166 TO denotes to
T294 167-172 NN denotes NF-κB
T295 173-183 NN denotes activation
T296 185-190 DT denotes These
T297 191-195 NN denotes data
T298 196-204 RB denotes strongly
T299 205-212 VB denotes suggest
T300 213-217 IN denotes that
T301 218-221 DT denotes the
T302 222-230 JJ denotes degraded
T303 231-236 NN denotes forms
T304 237-239 IN denotes of
T305 240-243 NN denotes CGN
R209 T270 T269 arg2Of incubation,by
R210 T270 T271 arg1Of incubation,with
R211 T273 T271 arg2Of antibody,with
R212 T273 T272 arg1Of antibody,anti-ICAM-1
R213 T276 T277 arg1Of dCGN,stimulated
R214 T277 T274 arg1Of stimulated,Finally
R215 T277 T275 arg1Of stimulated,","
R216 T277 T282 arg1Of stimulated,by
R217 T279 T280 arg1Of expression,and
R218 T280 T277 arg2Of and,stimulated
R219 T280 T278 arg1Of and,TNF-α
R220 T281 T280 arg2Of secretion,and
R221 T284 T285 arg1Of PBM,and
R222 T285 T282 arg2Of and,by
R223 T285 T283 arg1Of and,both
R224 T287 T285 arg2Of cells,and
R225 T287 T286 arg1Of cells,THP-1
R226 T290 T288 arg1Of effects,All
R227 T290 T289 arg1Of effects,these
R228 T290 T291 arg1Of effects,were
R229 T290 T292 arg2Of effects,linked
R230 T292 T291 arg2Of linked,were
R231 T292 T293 arg1Of linked,to
R232 T295 T293 arg2Of activation,to
R233 T295 T294 arg1Of activation,NF-κB
R234 T297 T296 arg1Of data,These
R235 T297 T299 arg1Of data,suggest
R236 T299 T298 arg1Of suggest,strongly
R237 T303 T301 arg1Of forms,the
R238 T303 T302 arg1Of forms,degraded
R239 T303 T304 arg1Of forms,of
R241 T305 T304 arg2Of CGN,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T518 8-10 IN denotes by
T519 11-21 NN denotes incubation
T520 22-26 IN denotes with
T521 27-38 JJ denotes anti-ICAM-1
T522 39-47 NN denotes antibody
T523 47-48 . denotes .
T524 49-56 RB denotes Finally
T525 56-57 , denotes ,
T526 58-62 NNP denotes dCGN
T527 63-73 VBD denotes stimulated
T528 74-79 JJ denotes TNF-α
T529 80-90 NN denotes expression
T530 91-94 CC denotes and
T531 95-104 NN denotes secretion
T532 105-107 IN denotes by
T533 108-112 DT denotes both
T534 113-116 NNP denotes PBM
T535 117-120 CC denotes and
T536 121-126 NNP denotes THP-1
T537 127-132 NNS denotes cells
T538 132-133 . denotes .
T539 134-137 PDT denotes All
T540 138-143 DT denotes these
T541 144-151 NNS denotes effects
T542 152-156 VBD denotes were
T543 157-163 VBN denotes linked
T544 164-166 TO denotes to
T545 167-172 NNP denotes NF-κB
T546 173-183 NN denotes activation
T547 183-184 . denotes .
T548 185-190 DT denotes These
T549 191-195 NNS denotes data
T550 196-204 RB denotes strongly
T551 205-212 VBP denotes suggest
T552 213-217 IN denotes that
T553 218-221 DT denotes the
T554 222-230 JJ denotes degraded
T555 231-236 NNS denotes forms
T556 237-239 IN denotes of
T557 240-243 NNP denotes CGN
R448 T519 T518 pobj incubation,by
R450 T521 T522 amod anti-ICAM-1,antibody
R451 T522 T520 pobj antibody,with
R453 T524 T527 advmod Finally,stimulated
R454 T525 T527 punct ",",stimulated
R455 T526 T527 nsubj dCGN,stimulated
R456 T527 T527 ROOT stimulated,stimulated
R457 T528 T529 amod TNF-α,expression
R458 T529 T527 dobj expression,stimulated
R459 T530 T529 cc and,expression
R460 T531 T529 conj secretion,expression
R461 T532 T527 prep by,stimulated
R462 T533 T534 preconj both,PBM
R463 T534 T537 nmod PBM,cells
R464 T535 T534 cc and,PBM
R465 T536 T534 conj THP-1,PBM
R466 T537 T532 pobj cells,by
R467 T538 T527 punct .,stimulated
R468 T539 T541 predet All,effects
R469 T540 T541 det these,effects
R470 T541 T543 nsubjpass effects,linked
R471 T542 T543 auxpass were,linked
R472 T543 T543 ROOT linked,linked
R473 T544 T543 prep to,linked
R474 T545 T546 compound NF-κB,activation
R475 T546 T544 pobj activation,to
R476 T547 T543 punct .,linked
R477 T548 T549 det These,data
R478 T549 T551 nsubj data,suggest
R479 T550 T551 advmod strongly,suggest
R480 T551 T551 ROOT suggest,suggest
R482 T553 T555 det the,forms
R483 T554 T555 amod degraded,forms
R485 T556 T555 prep of,forms
R486 T557 T556 pobj CGN,of

sentences

Id Subject Object Predicate Lexical cue
T81 49-133 Sentence denotes Finally, dCGN stimulated TNF-α expression and secretion by both PBM and THP-1 cells.
T82 134-184 Sentence denotes All these effects were linked to NF-κB activation.
T12 49-133 Sentence denotes Finally, dCGN stimulated TNF-α expression and secretion by both PBM and THP-1 cells.
T13 134-184 Sentence denotes All these effects were linked to NF-κB activation.

events-check-again

Id Subject Object Predicate Lexical cue
T657 63-73 Positive_regulation denotes stimulated
T658 63-73 Positive_regulation denotes stimulated
T659 74-79 Protein denotes TNF-α
T660 80-90 Gene_expression denotes expression
T661 95-104 Localization denotes secretion
R532 T659 T660 themeOf TNF-α,expression
R533 T659 T661 themeOf TNF-α,secretion
R534 T660 T658 themeOf expression,stimulated
R535 T661 T657 themeOf secretion,stimulated

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T674 27-47 Protein denotes anti-ICAM-1 antibody
T675 58-62 Protein denotes dCGN
T676 74-79 Protein denotes TNF-α
T677 80-90 Gene_expression denotes expression
T678 63-73 Positive_regulation denotes stimulated
T679 167-172 Protein denotes NF-κB
T680 173-183 Positive_regulation denotes activation
T681 240-243 Protein denotes CGN
T682 222-230 Protein_catabolism denotes degraded
R544 T675 T678 causeOf dCGN,stimulated
R545 T676 T677 themeOf TNF-α,expression
R546 T677 T678 themeOf expression,stimulated
R547 T679 T680 themeOf NF-κB,activation
R548 T681 T682 themeOf CGN,degraded

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T66 63-73 Positive_regulation denotes stimulated
T67 63-73 Positive_regulation denotes stimulated
T68 74-79 Protein denotes TNF-α
T69 80-90 Gene_expression denotes expression
T70 95-104 Localization denotes secretion
R24 T68 T69 themeOf TNF-α,expression
R25 T68 T70 themeOf TNF-α,secretion
R26 T69 T67 themeOf expression,stimulated
R27 T70 T66 themeOf secretion,stimulated

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T323 32-38 P05362 denotes ICAM-1
T324 74-77 P01375 denotes TNF
T325 74-79 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T46 63-73 Positive_regulation denotes stimulated
T47 74-79 Protein denotes TNF-α
T48 80-90 Gene_expression denotes expression
T49 95-104 Localization denotes secretion
R19 T47 T48 themeOf TNF-α,expression
R20 T48 T46 themeOf expression,stimulated
R21 T49 T46 themeOf secretion,stimulated