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PMC:2664230 / 8002-8242 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T3248 215-222 Positive_regulation denotes induced
T3249 223-228 Protein denotes TNF-α
T3250 229-239 Gene_expression denotes production
R2595 T3249 T3250 themeOf TNF-α,production
R2596 T3250 T3248 themeOf production,induced

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3788 0-3 DT denotes The
T3789 4-15 NN denotes stimulation
T3790 16-21 NN denotes times
T3791 22-25 CC denotes and
T3792 26-40 NN denotes concentrations
T3793 41-43 IN denotes of
T3794 44-47 NN denotes LPS
T3795 48-51 CC denotes and
T3796 52-55 NN denotes PTX
T3797 56-64 VB denotes utilized
T3798 65-67 IN denotes in
T3799 68-72 DT denotes this
T3800 73-78 NN denotes study
T3801 79-83 VB denotes were
T3802 84-94 VB denotes determined
T3803 95-97 IN denotes in
T3804 98-106 JJ denotes previous
T3805 107-112 NN denotes pilot
T3806 113-120 NN denotes studies
T3807 121-125 VB denotes done
T3808 126-128 IN denotes in
T3809 129-132 PRP-DOLLAR- denotes our
T3810 133-143 NN denotes laboratory
T3811 143-144 -COMMA- denotes ,
T3812 145-150 WDT denotes which
T3813 151-159 VB denotes examined
T3814 160-163 DT denotes the
T3815 164-171 NN denotes effects
T3816 172-174 IN denotes of
T3817 175-185 VB denotes increasing
T3818 186-200 NN denotes concentrations
T3819 201-203 IN denotes of
T3820 204-207 NN denotes PTX
T3821 208-210 IN denotes on
T3822 211-222 JJ denotes LPS-induced
T3823 223-228 NN denotes TNF-α
T3824 229-239 NN denotes production
R3126 T3790 T3789 arg1Of times,stimulation
R3127 T3790 T3791 arg1Of times,and
R3128 T3791 T3788 arg1Of and,The
R3129 T3791 T3801 arg1Of and,were
R3130 T3791 T3802 arg2Of and,determined
R3131 T3792 T3791 arg2Of concentrations,and
R3132 T3792 T3793 arg1Of concentrations,of
R3133 T3794 T3795 arg1Of LPS,and
R3134 T3795 T3793 arg2Of and,of
R3135 T3795 T3797 arg2Of and,utilized
R3136 T3796 T3795 arg2Of PTX,and
R3137 T3797 T3798 arg1Of utilized,in
R3138 T3800 T3798 arg2Of study,in
R3139 T3800 T3799 arg1Of study,this
R3140 T3802 T3801 arg2Of determined,were
R3141 T3802 T3803 arg1Of determined,in
R3142 T3806 T3803 arg2Of studies,in
R3143 T3806 T3804 arg1Of studies,previous
R3144 T3806 T3805 arg1Of studies,pilot
R3145 T3806 T3807 arg2Of studies,done
R3146 T3807 T3808 arg1Of done,in
R3147 T3810 T3808 arg2Of laboratory,in
R3148 T3810 T3809 arg1Of laboratory,our
R3149 T3810 T3811 arg1Of laboratory,","
R3150 T3810 T3812 arg1Of laboratory,which
R3151 T3810 T3813 arg1Of laboratory,examined
R3152 T3815 T3813 arg2Of effects,examined
R3153 T3815 T3814 arg1Of effects,the
R3154 T3815 T3816 arg1Of effects,of
R3155 T3815 T3821 arg1Of effects,on
R3156 T3818 T3816 arg2Of concentrations,of
R3157 T3818 T3817 arg1Of concentrations,increasing
R3158 T3818 T3819 arg1Of concentrations,of
R3159 T3820 T3819 arg2Of PTX,of
R3160 T3824 T3821 arg2Of production,on
R3161 T3824 T3822 arg1Of production,LPS-induced
R3162 T3824 T3823 arg1Of production,TNF-α

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3493 0-3 DT denotes The
T3494 4-15 NN denotes stimulation
T3495 16-21 NNS denotes times
T3496 22-25 CC denotes and
T3497 26-40 NNS denotes concentrations
T3498 41-43 IN denotes of
T3499 44-47 NNP denotes LPS
T3500 48-51 CC denotes and
T3501 52-55 NNP denotes PTX
T3502 56-64 VBD denotes utilized
T3503 65-67 IN denotes in
T3504 68-72 DT denotes this
T3505 73-78 NN denotes study
T3506 79-83 VBD denotes were
T3507 84-94 VBN denotes determined
T3508 95-97 IN denotes in
T3509 98-106 JJ denotes previous
T3510 107-112 NN denotes pilot
T3511 113-120 NNS denotes studies
T3512 121-125 VBN denotes done
T3513 126-128 IN denotes in
T3514 129-132 PRP$ denotes our
T3515 133-143 NN denotes laboratory
T3516 143-144 , denotes ,
T3517 145-150 WDT denotes which
T3518 151-159 VBD denotes examined
T3519 160-163 DT denotes the
T3520 164-171 NNS denotes effects
T3521 172-174 IN denotes of
T3522 175-185 VBG denotes increasing
T3523 186-200 NNS denotes concentrations
T3524 201-203 IN denotes of
T3525 204-207 NNP denotes PTX
T3526 208-210 IN denotes on
T3527 211-222 JJ denotes LPS-induced
T3528 223-228 JJ denotes TNF-α
T3529 229-239 NN denotes production
T3530 239-240 . denotes .
R2826 T3493 T3495 det The,times
R2827 T3494 T3495 compound stimulation,times
R2828 T3495 T3502 nsubj times,utilized
R2829 T3496 T3495 cc and,times
R2830 T3497 T3495 conj concentrations,times
R2831 T3498 T3497 prep of,concentrations
R2832 T3499 T3498 pobj LPS,of
R2833 T3500 T3499 cc and,LPS
R2834 T3501 T3499 conj PTX,LPS
R2835 T3502 T3502 ROOT utilized,utilized
R2836 T3503 T3502 prep in,utilized
R2837 T3504 T3505 det this,study
R2838 T3505 T3503 pobj study,in
R2839 T3506 T3507 auxpass were,determined
R2840 T3507 T3502 conj determined,utilized
R2841 T3508 T3507 prep in,determined
R2842 T3509 T3511 amod previous,studies
R2843 T3510 T3511 compound pilot,studies
R2844 T3511 T3508 pobj studies,in
R2845 T3512 T3511 acl done,studies
R2846 T3513 T3512 prep in,done
R2847 T3514 T3515 poss our,laboratory
R2848 T3515 T3513 pobj laboratory,in
R2849 T3516 T3515 punct ",",laboratory
R2850 T3517 T3518 nsubj which,examined
R2851 T3518 T3511 relcl examined,studies
R2852 T3519 T3520 det the,effects
R2853 T3520 T3518 dobj effects,examined
R2854 T3521 T3520 prep of,effects
R2855 T3522 T3521 pcomp increasing,of
R2856 T3523 T3522 dobj concentrations,increasing
R2857 T3524 T3523 prep of,concentrations
R2858 T3525 T3524 pobj PTX,of
R2859 T3526 T3523 prep on,concentrations
R2860 T3527 T3529 amod LPS-induced,production
R2861 T3528 T3529 compound TNF-α,production
R2862 T3529 T3526 pobj production,on
R2863 T3530 T3502 punct .,utilized

GO-BP

Id Subject Object Predicate Lexical cue
T3884 223-239 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T3886 223-239 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production

sentences

Id Subject Object Predicate Lexical cue
T3265 0-240 Sentence denotes The stimulation times and concentrations of LPS and PTX utilized in this study were determined in previous pilot studies done in our laboratory, which examined the effects of increasing concentrations of PTX on LPS-induced TNF-α production.
T62 0-240 Sentence denotes The stimulation times and concentrations of LPS and PTX utilized in this study were determined in previous pilot studies done in our laboratory, which examined the effects of increasing concentrations of PTX on LPS-induced TNF-α production.

events-check-again

Id Subject Object Predicate Lexical cue
T3941 215-222 Positive_regulation denotes induced
T3942 223-228 Protein denotes TNF-α
T3943 229-239 Gene_expression denotes production
R3234 T3942 T3943 themeOf TNF-α,production
R3235 T3943 T3941 themeOf production,induced

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3909 204-207 Protein denotes PTX
T3910 223-228 Protein denotes TNF-α
T3911 229-239 Gene_expression denotes production
T3912 164-171 Regulation denotes effects
R3211 T3909 T3912 causeOf PTX,effects
R3212 T3910 T3911 themeOf TNF-α,production
R3213 T3911 T3912 themeOf production,effects

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3868 223-226 P01375 denotes TNF
T3869 223-228 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T3236 164-171 Regulation denotes effects
T3237 215-222 Positive_regulation denotes induced
T3238 223-228 Protein denotes TNF-α
T3239 229-239 Gene_expression denotes production
R2590 T3238 T3239 themeOf TNF-α,production
R2591 T3239 T3237 themeOf production,induced