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PMC:2664230 / 731-1040 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T68 108-122 Phosphorylation denotes phosphorylated
T69 135-140 Protein denotes I-κBα
T70 160-163 Protein denotes p65
R36 T69 T68 themeOf I-κBα,phosphorylated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T556 1-4 CC denotes and
T557 5-12 NN denotes absence
T558 13-15 IN denotes of
T559 16-30 NN denotes Pentoxifylline
T560 31-32 -LRB- denotes (
T561 32-35 NN denotes PTX
T562 35-36 -COLON- denotes ;
T563 37-39 CD denotes 20
T564 40-42 NN denotes mM
T565 42-43 -RRB- denotes )
T566 43-44 -COMMA- denotes ,
T567 45-46 DT denotes a
T568 47-58 JJ denotes nonspecific
T569 59-76 NN denotes phosphodiesterase
T570 77-86 NN denotes inhibitor
T571 88-95 JJ denotes Western
T572 96-104 NN denotes blotting
T573 105-107 IN denotes of
T574 108-122 VB denotes phosphorylated
T575 123-134 JJ denotes cytoplasmic
T576 135-140 NN denotes I-κBα
T577 140-141 -COMMA- denotes ,
T578 142-149 JJ denotes nuclear
T579 150-159 NN denotes factor-κB
T580 160-163 NN denotes p65
T581 164-165 -LRB- denotes (
T582 165-170 NN denotes NF-κB
T583 170-171 -RRB- denotes )
T584 171-172 -COMMA- denotes ,
T585 173-176 CC denotes and
T586 177-184 JJ denotes nuclear
T587 185-198 JJ denotes cAMP-response
T588 199-206 NN denotes element
T589 207-214 NN denotes binding
T590 215-222 NN denotes protein
T591 223-224 -LRB- denotes (
T592 224-228 NN denotes CREB
T593 228-229 -RRB- denotes )
T594 230-233 VB denotes was
T595 234-243 VB denotes performed
T596 245-248 NN denotes DNA
T597 249-256 NN denotes binding
T598 257-259 IN denotes of
T599 260-265 NN denotes NF-κB
T600 266-269 CC denotes and
T601 270-274 NN denotes CREB
T602 275-278 VB denotes was
T603 279-287 VB denotes verified
T604 288-290 IN denotes by
T605 291-306 JJ denotes electrophoretic
R449 T556 T558 arg1Of and,of
R450 T557 T556 arg2Of absence,and
R451 T559 T558 arg2Of Pentoxifylline,of
R452 T559 T560 arg1Of Pentoxifylline,(
R453 T561 T562 arg1Of PTX,;
R454 T562 T560 arg2Of ;,(
R455 T564 T562 arg2Of mM,;
R456 T564 T563 arg1Of mM,20
R457 T565 T560 arg3Of ),(
R458 T570 T566 arg2Of inhibitor,","
R459 T570 T567 arg1Of inhibitor,a
R460 T570 T568 arg1Of inhibitor,nonspecific
R461 T570 T569 arg1Of inhibitor,phosphodiesterase
R462 T572 T571 arg1Of blotting,Western
R463 T572 T573 arg1Of blotting,of
R464 T572 T594 arg1Of blotting,was
R465 T572 T595 arg2Of blotting,performed
R466 T576 T574 arg2Of I-κBα,phosphorylated
R467 T576 T575 arg1Of I-κBα,cytoplasmic
R468 T576 T577 arg1Of I-κBα,","
R469 T577 T585 arg1Of ",",and
R470 T580 T577 arg2Of p65,","
R471 T580 T578 arg1Of p65,nuclear
R472 T580 T579 arg1Of p65,factor-κB
R473 T580 T581 arg1Of p65,(
R474 T582 T581 arg2Of NF-κB,(
R475 T583 T581 arg3Of ),(
R476 T585 T573 arg2Of and,of
R477 T585 T584 arg1Of and,","
R478 T590 T585 arg2Of protein,and
R479 T590 T586 arg1Of protein,nuclear
R480 T590 T587 arg1Of protein,cAMP-response
R481 T590 T588 arg1Of protein,element
R482 T590 T589 arg1Of protein,binding
R483 T590 T591 arg1Of protein,(
R484 T592 T591 arg2Of CREB,(
R485 T593 T591 arg3Of ),(
R486 T595 T594 arg2Of performed,was
R487 T597 T596 arg1Of binding,DNA
R488 T597 T598 arg1Of binding,of
R489 T597 T602 arg1Of binding,was
R490 T597 T603 arg2Of binding,verified
R491 T599 T600 arg1Of NF-κB,and
R492 T600 T598 arg2Of and,of
R493 T601 T600 arg2Of CREB,and
R494 T603 T602 arg2Of verified,was

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T241 1-4 CC denotes and
T242 5-12 NN denotes absence
T243 13-15 IN denotes of
T244 16-30 NNP denotes Pentoxifylline
T245 31-32 -LRB- denotes (
T246 32-35 NNP denotes PTX
T247 35-36 : denotes ;
T248 37-39 CD denotes 20
T249 40-42 NNP denotes mM
T250 42-43 -RRB- denotes )
T251 43-44 , denotes ,
T252 45-46 DT denotes a
T253 47-58 JJ denotes nonspecific
T254 59-76 NN denotes phosphodiesterase
T255 77-86 NN denotes inhibitor
T256 86-87 . denotes .
T257 88-95 JJ denotes Western
T258 96-104 VBG denotes blotting
T259 105-107 IN denotes of
T260 108-122 VBN denotes phosphorylated
T261 123-134 JJ denotes cytoplasmic
T262 135-140 NNP denotes I-κBα
T263 140-141 , denotes ,
T264 142-149 JJ denotes nuclear
T265 150-159 NNP denotes factor-κB
T266 160-163 NNS denotes p65
T267 164-165 -LRB- denotes (
T268 165-170 NN denotes NF-κB
T269 170-171 -RRB- denotes )
T270 171-172 , denotes ,
T271 173-176 CC denotes and
T272 177-184 JJ denotes nuclear
T273 185-198 JJ denotes cAMP-response
T274 199-206 NN denotes element
T275 207-214 JJ denotes binding
T276 215-222 NN denotes protein
T277 223-224 -LRB- denotes (
T278 224-228 NNP denotes CREB
T279 228-229 -RRB- denotes )
T280 230-233 VBD denotes was
T281 234-243 VBN denotes performed
T282 243-244 . denotes .
T283 245-248 NNP denotes DNA
T284 249-256 JJ denotes binding
T285 257-259 IN denotes of
T286 260-265 NNP denotes NF-κB
T287 266-269 CC denotes and
T288 270-274 NNP denotes CREB
T289 275-278 VBD denotes was
T290 279-287 VBN denotes verified
T291 288-290 IN denotes by
T292 291-306 JJ denotes electrophoretic
R141 T243 T242 prep of,absence
R142 T244 T243 pobj Pentoxifylline,of
R143 T245 T246 punct (,PTX
R144 T246 T244 appos PTX,Pentoxifylline
R145 T247 T249 punct ;,mM
R146 T248 T249 nummod 20,mM
R147 T249 T249 ROOT mM,mM
R148 T250 T249 punct ),mM
R149 T251 T249 punct ",",mM
R150 T252 T255 det a,inhibitor
R151 T253 T255 amod nonspecific,inhibitor
R152 T254 T255 compound phosphodiesterase,inhibitor
R153 T255 T249 appos inhibitor,mM
R154 T256 T249 punct .,mM
R155 T257 T258 amod Western,blotting
R156 T258 T281 nsubjpass blotting,performed
R157 T259 T258 prep of,blotting
R158 T260 T262 amod phosphorylated,I-κBα
R159 T261 T262 compound cytoplasmic,I-κBα
R160 T262 T259 pobj I-κBα,of
R161 T263 T262 punct ",",I-κBα
R162 T264 T266 amod nuclear,p65
R163 T265 T266 compound factor-κB,p65
R164 T266 T262 appos p65,I-κBα
R165 T267 T266 punct (,p65
R166 T268 T266 appos NF-κB,p65
R167 T269 T266 punct ),p65
R168 T270 T266 punct ",",p65
R169 T271 T266 cc and,p65
R170 T272 T274 amod nuclear,element
R171 T273 T274 amod cAMP-response,element
R172 T274 T276 compound element,protein
R173 T275 T276 amod binding,protein
R174 T276 T266 conj protein,p65
R175 T277 T278 punct (,CREB
R176 T278 T276 appos CREB,protein
R177 T279 T276 punct ),protein
R178 T280 T281 auxpass was,performed
R179 T281 T281 ROOT performed,performed
R180 T282 T281 punct .,performed
R181 T283 T284 npadvmod DNA,binding
R182 T284 T290 nsubjpass binding,verified
R183 T285 T284 prep of,binding
R184 T286 T285 pobj NF-κB,of
R185 T287 T286 cc and,NF-κB
R186 T288 T286 conj CREB,NF-κB
R187 T289 T290 auxpass was,verified
R188 T290 T290 ROOT verified,verified
R189 T291 T290 agent by,verified

GO-BP

Id Subject Object Predicate Lexical cue
T840 59-76 http://purl.obolibrary.org/obo/GO_0008081 denotes phosphodiesterase
T858 59-86 http://purl.obolibrary.org/obo/GO_0051344 denotes phosphodiesterase inhibitor
T859 185-198 http://purl.obolibrary.org/obo/GO_0051591 denotes cAMP-response

GO-MF

Id Subject Object Predicate Lexical cue
T867 59-76 http://purl.obolibrary.org/obo/GO_0008081 denotes phosphodiesterase
T870 207-214 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T871 249-256 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T875 207-222 http://purl.obolibrary.org/obo/GO_0005515 denotes binding protein
T876 245-256 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T880 249-265 http://purl.obolibrary.org/obo/GO_0051059 denotes binding of NF-κB

sentences

Id Subject Object Predicate Lexical cue
T119 88-244 Sentence denotes Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed.
T11 88-244 Sentence denotes Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed.

events-check-again

Id Subject Object Predicate Lexical cue
T898 108-122 Phosphorylation denotes phosphorylated
T899 135-140 Protein denotes I-κBα
T900 160-163 Protein denotes p65
R657 T899 T898 themeOf I-κBα,phosphorylated

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T933 108-140 Protein denotes phosphorylated cytoplasmic I-κBα
T934 142-159 Protein denotes nuclear factor-κB
T935 160-163 Protein denotes p65
T936 165-170 Protein denotes NF-κB
T937 177-222 Protein denotes nuclear cAMP-response element binding protein
T938 224-228 Protein denotes CREB
T939 260-265 Protein denotes NF-κB
T940 270-274 Protein denotes CREB
T941 249-256 Binding denotes binding
T942 249-256 Binding denotes binding
R679 T939 T941 themeOf NF-κB,binding
R680 T940 T942 themeOf CREB,binding

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T766 160-163 P21579 denotes p65
T767 160-163 Q04206 denotes p65
T768 185-222 O43889 denotes cAMP-response element binding protein
T769 185-222 P15336 denotes cAMP-response element binding protein
T770 185-222 P18848 denotes cAMP-response element binding protein
T771 185-222 Q8TEY5 denotes cAMP-response element binding protein
T772 185-222 Q02930 denotes cAMP-response element binding protein
T773 185-222 P16220 denotes cAMP-response element binding protein
T774 224-228 P16220 denotes CREB
T775 224-228 O43889 denotes CREB
T776 224-228 Q8TEY5 denotes CREB
T777 224-228 Q02930 denotes CREB
T778 224-228 P18848 denotes CREB
T779 224-228 P15336 denotes CREB
T780 270-274 O43889 denotes CREB
T781 270-274 Q02930 denotes CREB
T782 270-274 P15336 denotes CREB
T783 270-274 P16220 denotes CREB
T784 270-274 Q8TEY5 denotes CREB
T785 270-274 P18848 denotes CREB

test2

Id Subject Object Predicate Lexical cue
T41 108-122 Phosphorylation denotes phosphorylated
T42 135-140 Protein denotes I-κBα
T43 160-163 Protein denotes p65
R25 T42 T41 themeOf I-κBα,phosphorylated