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    bionlp-st-ge-2016-reference

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T298"},{"id":"R196","pred":"nsubjpass","subj":"T298","obj":"T300"},{"id":"R197","pred":"auxpass","subj":"T299","obj":"T300"},{"id":"R198","pred":"ROOT","subj":"T300","obj":"T300"},{"id":"R199","pred":"prep","subj":"T301","obj":"T300"},{"id":"R200","pred":"det","subj":"T302","obj":"T303"},{"id":"R201","pred":"pobj","subj":"T303","obj":"T301"},{"id":"R202","pred":"prep","subj":"T304","obj":"T303"},{"id":"R203","pred":"amod","subj":"T305","obj":"T306"},{"id":"R204","pred":"pobj","subj":"T306","obj":"T304"},{"id":"R205","pred":"prep","subj":"T307","obj":"T303"},{"id":"R206","pred":"det","subj":"T308","obj":"T309"},{"id":"R207","pred":"pobj","subj":"T309","obj":"T307"},{"id":"R208","pred":"cc","subj":"T310","obj":"T309"},{"id":"R209","pred":"conj","subj":"T311","obj":"T309"},{"id":"R210","pred":"compound","subj":"T312","obj":"T313"},{"id":"R211","pred":"ROOT","subj":"T313","obj":"T313"},{"id":"R212","pred":"det","subj":"T314","obj":"T315"},{"id":"R213","pred":"ROOT","subj":"T315","obj":"T315"},{"id":"R214","pred":"prep","subj":"T316","obj":"T315"},{"id":"R215","pred":"det","subj":"T317","obj":"T320"},{"id":"R216","pred":"nmod","subj":"T318","obj":"T320"},{"id":"R217","pred":"compound","subj":"T319","obj":"T320"},{"id":"R218","pred":"pobj","subj":"T320","obj":"T316"},{"id":"R219","pred":"punct","subj":"T321","obj":"T320"},{"id":"R220","pred":"appos","subj":"T322","obj":"T320"},{"id":"R221","pred":"punct","subj":"T323","obj":"T320"},{"id":"R222","pred":"punct","subj":"T324","obj":"T315"}],"text":"METHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA)."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T840","span":{"begin":142,"end":159},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T858","span":{"begin":142,"end":169},"obj":"http://purl.obolibrary.org/obo/GO_0051344"},{"id":"T859","span":{"begin":268,"end":281},"obj":"http://purl.obolibrary.org/obo/GO_0051591"}],"text":"METHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA)."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T867","span":{"begin":142,"end":159},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T870","span":{"begin":290,"end":297},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T871","span":{"begin":332,"end":339},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T875","span":{"begin":290,"end":305},"obj":"http://purl.obolibrary.org/obo/GO_0005515"},{"id":"T876","span":{"begin":328,"end":339},"obj":"http://purl.obolibrary.org/obo/GO_0003677"},{"id":"T880","span":{"begin":332,"end":348},"obj":"http://purl.obolibrary.org/obo/GO_0051059"}],"text":"METHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA)."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T882","span":{"begin":26,"end":31},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T883","span":{"begin":474,"end":479},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"METHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA)."}

    sentences

    {"project":"sentences","denotations":[{"id":"T117","span":{"begin":0,"end":7},"obj":"Sentence"},{"id":"T118","span":{"begin":8,"end":170},"obj":"Sentence"},{"id":"T119","span":{"begin":171,"end":327},"obj":"Sentence"},{"id":"T120","span":{"begin":328,"end":411},"obj":"Sentence"},{"id":"T121","span":{"begin":412,"end":584},"obj":"Sentence"},{"id":"T9","span":{"begin":0,"end":7},"obj":"Sentence"},{"id":"T10","span":{"begin":8,"end":170},"obj":"Sentence"},{"id":"T11","span":{"begin":171,"end":327},"obj":"Sentence"},{"id":"T12","span":{"begin":328,"end":411},"obj":"Sentence"},{"id":"T13","span":{"begin":412,"end":584},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"METHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA)."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T898","span":{"begin":191,"end":205},"obj":"Phosphorylation"},{"id":"T899","span":{"begin":218,"end":223},"obj":"Protein"},{"id":"T900","span":{"begin":243,"end":246},"obj":"Protein"},{"id":"T901","span":{"begin":412,"end":417},"obj":"Protein"}],"relations":[{"id":"R657","pred":"themeOf","subj":"T899","obj":"T898"}],"text":"METHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA)."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T933","span":{"begin":191,"end":223},"obj":"Protein"},{"id":"T934","span":{"begin":225,"end":242},"obj":"Protein"},{"id":"T935","span":{"begin":243,"end":246},"obj":"Protein"},{"id":"T936","span":{"begin":248,"end":253},"obj":"Protein"},{"id":"T937","span":{"begin":260,"end":305},"obj":"Protein"},{"id":"T938","span":{"begin":307,"end":311},"obj":"Protein"},{"id":"T939","span":{"begin":343,"end":348},"obj":"Protein"},{"id":"T940","span":{"begin":353,"end":357},"obj":"Protein"},{"id":"T941","span":{"begin":332,"end":339},"obj":"Binding"},{"id":"T942","span":{"begin":332,"end":339},"obj":"Binding"},{"id":"T943","span":{"begin":412,"end":417},"obj":"Protein"},{"id":"T944","span":{"begin":508,"end":524},"obj":"Protein"},{"id":"T945","span":{"begin":525,"end":535},"obj":"Negative_regulation"}],"relations":[{"id":"R679","pred":"themeOf","subj":"T939","obj":"T941"},{"id":"R680","pred":"themeOf","subj":"T940","obj":"T942"},{"id":"R681","pred":"themeOf","subj":"T944","obj":"T945"}],"text":"METHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA)."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T766","span":{"begin":243,"end":246},"obj":"P21579"},{"id":"T767","span":{"begin":243,"end":246},"obj":"Q04206"},{"id":"T768","span":{"begin":268,"end":305},"obj":"O43889"},{"id":"T769","span":{"begin":268,"end":305},"obj":"P15336"},{"id":"T770","span":{"begin":268,"end":305},"obj":"P18848"},{"id":"T771","span":{"begin":268,"end":305},"obj":"Q8TEY5"},{"id":"T772","span":{"begin":268,"end":305},"obj":"Q02930"},{"id":"T773","span":{"begin":268,"end":305},"obj":"P16220"},{"id":"T774","span":{"begin":307,"end":311},"obj":"P16220"},{"id":"T775","span":{"begin":307,"end":311},"obj":"O43889"},{"id":"T776","span":{"begin":307,"end":311},"obj":"Q8TEY5"},{"id":"T777","span":{"begin":307,"end":311},"obj":"Q02930"},{"id":"T778","span":{"begin":307,"end":311},"obj":"P18848"},{"id":"T779","span":{"begin":307,"end":311},"obj":"P15336"},{"id":"T780","span":{"begin":353,"end":357},"obj":"O43889"},{"id":"T781","span":{"begin":353,"end":357},"obj":"Q02930"},{"id":"T782","span":{"begin":353,"end":357},"obj":"P15336"},{"id":"T783","span":{"begin":353,"end":357},"obj":"P16220"},{"id":"T784","span":{"begin":353,"end":357},"obj":"Q8TEY5"},{"id":"T785","span":{"begin":353,"end":357},"obj":"P18848"},{"id":"T786","span":{"begin":412,"end":415},"obj":"P01375"},{"id":"T787","span":{"begin":412,"end":417},"obj":"P01375"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"METHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA)."}

    test2

    {"project":"test2","denotations":[{"id":"T41","span":{"begin":191,"end":205},"obj":"Phosphorylation"},{"id":"T42","span":{"begin":218,"end":223},"obj":"Protein"},{"id":"T43","span":{"begin":243,"end":246},"obj":"Protein"},{"id":"T44","span":{"begin":412,"end":417},"obj":"Protein"}],"relations":[{"id":"R25","pred":"themeOf","subj":"T42","obj":"T41"}],"text":"METHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA)."}