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PMC:2664230 / 453-771 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T64 130-136 Regulation denotes alters
T65 137-142 Protein denotes TNF-α
T66 143-153 Gene_expression denotes production
T67 154-172 Positive_regulation denotes in the presence of
R33 T64 T67 themeOf alters,in the presence of
R34 T65 T66 themeOf TNF-α,production
R35 T66 T64 themeOf production,alters

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T511 0-3 NN denotes LPS
T512 4-15 NN denotes stimulation
T513 16-18 VB denotes is
T514 19-22 CD denotes one
T515 23-25 IN denotes of
T516 26-29 DT denotes the
T517 30-33 JJ denotes key
T518 34-39 NN denotes steps
T519 40-42 IN denotes in
T520 43-52 JJ denotes bacterial
T521 53-59 NN denotes sepsis
T522 60-63 CC denotes and
T523 64-76 NN denotes inflammation
T524 78-81 DT denotes The
T525 82-91 NN denotes mechanism
T526 92-94 IN denotes by
T527 95-100 WDT denotes which
T528 101-118 NN denotes phosphodiesterase
T529 119-129 NN denotes inhibition
T530 130-136 VB denotes alters
T531 137-142 NN denotes TNF-α
T532 143-153 NN denotes production
T533 154-156 IN denotes in
T534 157-160 DT denotes the
T535 161-169 NN denotes presence
T536 170-172 IN denotes of
T537 173-176 NN denotes LPS
T538 177-184 VB denotes remains
T539 185-192 JJ denotes unclear
T540 195-202 NN denotes METHODS
T541 203-208 JJ denotes Human
T542 209-220 JJ denotes mononuclear
T543 221-226 NN denotes cells
T544 227-231 VB denotes were
T545 232-242 VB denotes stimulated
T546 243-247 IN denotes with
T547 248-251 NN denotes LPS
T548 252-253 -LRB- denotes (
T549 253-254 CD denotes 1
T550 255-260 NN denotes μg/mL
T551 260-261 -RRB- denotes )
T552 261-262 -COMMA- denotes ,
T553 263-265 IN denotes in
T554 266-269 DT denotes the
T555 270-278 NN denotes presence
T556 279-282 CC denotes and
T557 283-290 NN denotes absence
T558 291-293 IN denotes of
T559 294-308 NN denotes Pentoxifylline
T560 309-310 -LRB- denotes (
T561 310-313 NN denotes PTX
T562 313-314 -COLON- denotes ;
T563 315-317 CD denotes 20
R405 T512 T511 arg1Of stimulation,LPS
R406 T514 T513 arg2Of one,is
R407 T514 T515 arg1Of one,of
R408 T518 T515 arg2Of steps,of
R409 T518 T516 arg1Of steps,the
R410 T518 T517 arg1Of steps,key
R411 T518 T519 arg1Of steps,in
R412 T521 T522 arg1Of sepsis,and
R413 T522 T519 arg2Of and,in
R414 T522 T520 arg1Of and,bacterial
R415 T523 T522 arg2Of inflammation,and
R416 T525 T524 arg1Of mechanism,The
R417 T525 T526 arg2Of mechanism,by
R418 T525 T527 arg1Of mechanism,which
R419 T525 T538 arg1Of mechanism,remains
R420 T525 T539 arg1Of mechanism,unclear
R421 T529 T528 arg1Of inhibition,phosphodiesterase
R422 T529 T530 arg1Of inhibition,alters
R423 T530 T526 arg1Of alters,by
R424 T530 T533 arg1Of alters,in
R425 T532 T530 arg2Of production,alters
R426 T532 T531 arg1Of production,TNF-α
R427 T535 T533 arg2Of presence,in
R428 T535 T534 arg1Of presence,the
R429 T535 T536 arg1Of presence,of
R430 T537 T536 arg2Of LPS,of
R431 T539 T538 arg2Of unclear,remains
R432 T543 T541 arg1Of cells,Human
R433 T543 T542 arg1Of cells,mononuclear
R434 T543 T544 arg1Of cells,were
R435 T543 T545 arg2Of cells,stimulated
R436 T545 T544 arg2Of stimulated,were
R437 T545 T546 arg1Of stimulated,with
R438 T547 T546 arg2Of LPS,with
R439 T547 T548 arg1Of LPS,(
R440 T547 T552 arg1Of LPS,","
R441 T547 T553 arg1Of LPS,in
R443 T550 T548 arg2Of μg/mL,(
R444 T550 T549 arg1Of μg/mL,1
R445 T551 T548 arg3Of ),(
R446 T555 T556 arg1Of presence,and
R447 T556 T553 arg2Of and,in
R448 T556 T554 arg1Of and,the
R449 T556 T558 arg1Of and,of
R450 T557 T556 arg2Of absence,and
R451 T559 T558 arg2Of Pentoxifylline,of
R452 T559 T560 arg1Of Pentoxifylline,(
R453 T561 T562 arg1Of PTX,;
R454 T562 T560 arg2Of ;,(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T192 0-3 NNP denotes LPS
T193 4-15 NN denotes stimulation
T194 16-18 VBZ denotes is
T195 19-22 CD denotes one
T196 23-25 IN denotes of
T197 26-29 DT denotes the
T198 30-33 JJ denotes key
T199 34-39 NNS denotes steps
T200 40-42 IN denotes in
T201 43-52 JJ denotes bacterial
T202 53-59 NN denotes sepsis
T203 60-63 CC denotes and
T204 64-76 NN denotes inflammation
T205 76-77 . denotes .
T206 78-81 DT denotes The
T207 82-91 NN denotes mechanism
T208 92-94 IN denotes by
T209 95-100 WDT denotes which
T210 101-118 NN denotes phosphodiesterase
T211 119-129 NN denotes inhibition
T212 130-136 VBZ denotes alters
T213 137-142 JJ denotes TNF-α
T214 143-153 NN denotes production
T215 154-156 IN denotes in
T216 157-160 DT denotes the
T217 161-169 NN denotes presence
T218 170-172 IN denotes of
T219 173-176 NNP denotes LPS
T220 177-184 VBZ denotes remains
T221 185-192 JJ denotes unclear
T222 192-193 . denotes .
T223 195-202 NNP denotes METHODS
T224 203-208 NNP denotes Human
T225 209-220 NN denotes mononuclear
T226 221-226 NNS denotes cells
T227 227-231 VBD denotes were
T228 232-242 VBN denotes stimulated
T229 243-247 IN denotes with
T230 248-251 NNP denotes LPS
T231 252-253 -LRB- denotes (
T232 253-254 CD denotes 1
T233 255-257 NN denotes μg
T234 257-258 NN denotes /
T235 258-260 NNP denotes mL
T236 260-261 -RRB- denotes )
T237 261-262 , denotes ,
T238 263-265 IN denotes in
T239 266-269 DT denotes the
T240 270-278 NN denotes presence
T241 279-282 CC denotes and
T242 283-290 NN denotes absence
T243 291-293 IN denotes of
T244 294-308 NNP denotes Pentoxifylline
T245 309-310 -LRB- denotes (
T246 310-313 NNP denotes PTX
T247 313-314 : denotes ;
T248 315-317 CD denotes 20
R90 T192 T193 compound LPS,stimulation
R92 T194 T194 ROOT is,is
R93 T195 T194 attr one,is
R94 T196 T195 prep of,one
R95 T197 T199 det the,steps
R96 T198 T199 amod key,steps
R97 T199 T196 pobj steps,of
R98 T200 T199 prep in,steps
R99 T201 T202 amod bacterial,sepsis
R103 T205 T194 punct .,is
R104 T206 T207 det The,mechanism
R105 T207 T220 nsubj mechanism,remains
R106 T208 T212 prep by,alters
R107 T209 T208 pobj which,by
R108 T210 T211 amod phosphodiesterase,inhibition
R109 T211 T212 nsubj inhibition,alters
R110 T212 T207 relcl alters,mechanism
R111 T213 T214 amod TNF-α,production
R112 T214 T212 dobj production,alters
R113 T215 T212 prep in,alters
R114 T216 T217 det the,presence
R115 T217 T215 pobj presence,in
R116 T218 T217 prep of,presence
R117 T219 T218 pobj LPS,of
R118 T220 T220 ROOT remains,remains
R119 T221 T220 acomp unclear,remains
R120 T222 T220 punct .,remains
R121 T223 T226 compound METHODS,cells
R122 T224 T226 compound Human,cells
R123 T225 T226 compound mononuclear,cells
R124 T226 T228 nsubjpass cells,stimulated
R125 T227 T228 auxpass were,stimulated
R127 T229 T228 prep with,stimulated
R128 T230 T229 pobj LPS,with
R129 T231 T235 punct (,mL
R130 T232 T233 nummod 1,μg
R131 T233 T235 compound μg,mL
R132 T234 T235 compound /,mL
R133 T235 T230 appos mL,LPS
R134 T236 T235 punct ),mL
R135 T237 T230 punct ",",LPS
R136 T238 T228 prep in,stimulated
R137 T239 T240 det the,presence
R138 T240 T238 pobj presence,in
R139 T241 T240 cc and,presence
R140 T242 T240 conj absence,presence
R141 T243 T242 prep of,absence
R142 T244 T243 pobj Pentoxifylline,of
R143 T245 T246 punct (,PTX
R144 T246 T244 appos PTX,Pentoxifylline
R100 T202 T200 pobj sepsis,in
R101 T203 T202 cc and,sepsis
R102 T204 T202 conj inflammation,sepsis

GO-BP

Id Subject Object Predicate Lexical cue
T828 137-153 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T839 101-118 http://purl.obolibrary.org/obo/GO_0008081 denotes phosphodiesterase
T856 64-76 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

GO-MF

Id Subject Object Predicate Lexical cue
T866 101-118 http://purl.obolibrary.org/obo/GO_0008081 denotes phosphodiesterase

GO-CC

Id Subject Object Predicate Lexical cue
T882 221-226 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T116 78-193 Sentence denotes The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.
T117 195-202 Sentence denotes METHODS
T8 78-193 Sentence denotes The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.
T9 195-202 Sentence denotes METHODS

events-check-again

Id Subject Object Predicate Lexical cue
T894 130-136 Regulation denotes alters
T895 137-142 Protein denotes TNF-α
T896 143-153 Gene_expression denotes production
T897 154-172 Positive_regulation denotes in the presence of
R654 T894 T897 themeOf alters,in the presence of
R655 T895 T896 themeOf TNF-α,production
R656 T896 T894 themeOf production,alters

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T929 4-15 Positive_regulation denotes stimulation
T930 137-142 Protein denotes TNF-α
T931 143-153 Gene_expression denotes production
T932 130-136 Regulation denotes alters
R677 T930 T931 themeOf TNF-α,production
R678 T931 T932 themeOf production,alters

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T764 137-140 P01375 denotes TNF
T765 137-142 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T38 130-136 Regulation denotes alters
T39 137-142 Protein denotes TNF-α
T40 143-153 Gene_expression denotes production
R23 T39 T40 themeOf TNF-α,production
R24 T40 T38 themeOf production,alters