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PMC:2664230 / 3943-4119 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1138 83-90 Negative_regulation denotes inhibit
T1139 97-106 Regulation denotes dependent
T1140 129-142 Transcription denotes transcription
T1141 164-169 Protein denotes TNF-α
R840 T1139 T1138 themeOf dependent,inhibit
R841 T1140 T1139 themeOf transcription,dependent
R842 T1141 T1140 themeOf TNF-α,transcription

2_test

Id Subject Object Predicate Lexical cue
18568240-8702838-22101118 175-176 8702838 denotes 9

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1884 0-2 PRP denotes It
T1885 3-6 VB denotes has
T1886 7-11 VB denotes been
T1887 12-19 RB denotes clearly
T1888 20-32 VB denotes demonstrated
T1889 33-37 IN denotes that
T1890 38-44 NN denotes agents
T1891 45-49 WDT denotes that
T1892 50-58 VB denotes increase
T1893 59-72 JJ denotes intracellular
T1894 73-77 NN denotes cAMP
T1895 78-82 RB denotes also
T1896 83-90 VB denotes inhibit
T1897 91-106 JJ denotes NF-κB-dependent
T1898 107-123 JJ denotes pro-inflammatory
T1899 124-128 NN denotes gene
T1900 129-142 NN denotes transcription
T1901 142-143 -COMMA- denotes ,
T1902 144-156 RB denotes particularly
T1903 157-159 IN denotes of
T1904 160-163 DT denotes the
T1905 164-169 NN denotes TNF-α
T1906 170-176 NN denotes gene.9
R1578 T1884 T1885 arg1Of It,has
R1579 T1884 T1886 arg1Of It,been
R1580 T1884 T1888 arg2Of It,demonstrated
R1581 T1888 T1885 arg2Of demonstrated,has
R1582 T1888 T1886 arg2Of demonstrated,been
R1583 T1888 T1887 arg1Of demonstrated,clearly
R1584 T1890 T1891 arg1Of agents,that
R1585 T1890 T1892 arg1Of agents,increase
R1586 T1890 T1896 arg1Of agents,inhibit
R1587 T1894 T1892 arg2Of cAMP,increase
R1588 T1894 T1893 arg1Of cAMP,intracellular
R1589 T1896 T1888 arg3Of inhibit,demonstrated
R1590 T1896 T1889 arg1Of inhibit,that
R1591 T1896 T1895 arg1Of inhibit,also
R1592 T1900 T1896 arg2Of transcription,inhibit
R1593 T1900 T1897 arg1Of transcription,NF-κB-dependent
R1594 T1900 T1898 arg1Of transcription,pro-inflammatory
R1595 T1900 T1899 arg1Of transcription,gene
R1596 T1900 T1901 arg1Of transcription,","
R1597 T1900 T1903 arg1Of transcription,of
R1598 T1903 T1902 arg1Of of,particularly
R1599 T1906 T1903 arg2Of gene.9,of
R1600 T1906 T1904 arg1Of gene.9,the
R1601 T1906 T1905 arg1Of gene.9,TNF-α

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1449 0-2 PRP denotes It
T1450 3-6 VBZ denotes has
T1451 7-11 VBN denotes been
T1452 12-19 RB denotes clearly
T1453 20-32 VBN denotes demonstrated
T1454 33-37 IN denotes that
T1455 38-44 NNS denotes agents
T1456 45-49 WDT denotes that
T1457 50-58 VBP denotes increase
T1458 59-72 JJ denotes intracellular
T1459 73-77 NNP denotes cAMP
T1460 78-82 RB denotes also
T1461 83-90 VBP denotes inhibit
T1462 91-106 JJ denotes NF-κB-dependent
T1463 107-123 JJ denotes pro-inflammatory
T1464 124-128 NN denotes gene
T1465 129-142 NN denotes transcription
T1466 142-143 , denotes ,
T1467 144-156 RB denotes particularly
T1468 157-159 IN denotes of
T1469 160-163 DT denotes the
T1470 164-169 NNP denotes TNF-α
T1471 170-174 NN denotes gene
T1472 174-176 CD denotes .9
R1135 T1449 T1453 nsubjpass It,demonstrated
R1136 T1450 T1453 aux has,demonstrated
R1137 T1451 T1453 auxpass been,demonstrated
R1138 T1452 T1453 advmod clearly,demonstrated
R1139 T1453 T1453 ROOT demonstrated,demonstrated
R1140 T1454 T1461 mark that,inhibit
R1141 T1455 T1461 nsubj agents,inhibit
R1142 T1456 T1457 nsubj that,increase
R1143 T1457 T1455 relcl increase,agents
R1144 T1458 T1459 compound intracellular,cAMP
R1145 T1459 T1457 dobj cAMP,increase
R1146 T1460 T1461 advmod also,inhibit
R1147 T1461 T1453 ccomp inhibit,demonstrated
R1148 T1462 T1465 amod NF-κB-dependent,transcription
R1149 T1463 T1465 amod pro-inflammatory,transcription
R1150 T1464 T1465 compound gene,transcription
R1151 T1465 T1461 dobj transcription,inhibit
R1152 T1466 T1465 punct ",",transcription
R1153 T1467 T1468 advmod particularly,of
R1154 T1468 T1465 prep of,transcription
R1155 T1469 T1471 det the,gene
R1156 T1470 T1471 compound TNF-α,gene
R1157 T1471 T1468 pobj gene,of

GO-BP

Id Subject Object Predicate Lexical cue
T2119 129-142 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T2167 83-96 http://purl.obolibrary.org/obo/GO_0032088 denotes inhibit NF-κB
T2168 83-96 http://purl.obolibrary.org/obo/GO_0007252 denotes inhibit NF-κB

GO-CC

Id Subject Object Predicate Lexical cue
T2221 59-72 http://purl.obolibrary.org/obo/GO_0005622 denotes intracellular

sentences

Id Subject Object Predicate Lexical cue
T1156 0-176 Sentence denotes It has been clearly demonstrated that agents that increase intracellular cAMP also inhibit NF-κB-dependent pro-inflammatory gene transcription, particularly of the TNF-α gene.9
T30 0-176 Sentence denotes It has been clearly demonstrated that agents that increase intracellular cAMP also inhibit NF-κB-dependent pro-inflammatory gene transcription, particularly of the TNF-α gene.9

events-check-again

Id Subject Object Predicate Lexical cue
T2381 83-90 Negative_regulation denotes inhibit
T2382 97-106 Regulation denotes dependent
T2383 129-142 Transcription denotes transcription
T2384 164-169 Protein denotes TNF-α
R1842 T2382 T2381 themeOf dependent,inhibit
R1843 T2383 T2382 themeOf transcription,dependent
R1845 T2384 T2383 themeOf TNF-α,transcription

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2271 91-96 Protein denotes NF-κB
T2272 164-169 Protein denotes TNF-α
T2273 129-142 Transcription denotes transcription
T2274 129-142 Transcription denotes transcription
T2275 83-90 Negative_regulation denotes inhibit
T2276 83-90 Negative_regulation denotes inhibit
R1784 T2271 T2273 themeOf NF-κB,transcription
R1785 T2272 T2274 themeOf TNF-α,transcription
R1787 T2272 T2275 causeOf TNF-α,inhibit
R1788 T2272 T2276 causeOf TNF-α,inhibit
R1789 T2273 T2275 themeOf transcription,inhibit
R1791 T2274 T2276 themeOf transcription,inhibit

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2064 164-167 P01375 denotes TNF
T2065 164-169 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue Speculation
T1114 83-90 Negative_regulation denotes inhibit
T1115 97-106 Regulation denotes dependent true
T1116 164-169 Protein denotes TNF-α
R827 T1115 T1114 themeOf dependent,inhibit