PMC:2664230 / 2602-2776 JSONTXT

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    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T1133","span":{"begin":145,"end":155},"obj":"Negative_regulation"},{"id":"T1129","span":{"begin":1,"end":11},"obj":"Gene_expression"},{"id":"T1130","span":{"begin":14,"end":19},"obj":"Protein"},{"id":"T1131","span":{"begin":122,"end":127},"obj":"Protein"},{"id":"T1132","span":{"begin":128,"end":137},"obj":"Gene_expression"}],"relations":[{"id":"R835","pred":"themeOf","subj":"T1131","obj":"T1132"},{"id":"R836","pred":"themeOf","subj":"T1132","obj":"T1133"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" production.3 TNF-α is a potent pro-inflammatory cytokine involved in a wide spectrum of cellular responses. Furthermore, TNF-α synthesis can be attenuated in immune cells ex"}

    2_test

    {"project":"2_test","denotations":[{"id":"18568240-9442376-22101113","span":{"begin":12,"end":13},"obj":"9442376"}],"text":" production.3 TNF-α is a potent pro-inflammatory cytokine involved in a wide spectrum of cellular responses. Furthermore, TNF-α synthesis can be attenuated in immune cells ex"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T1684","span":{"begin":1,"end":13},"obj":"NN"},{"id":"T1685","span":{"begin":14,"end":19},"obj":"NN"},{"id":"T1686","span":{"begin":20,"end":22},"obj":"VB"},{"id":"T1687","span":{"begin":23,"end":24},"obj":"DT"},{"id":"T1688","span":{"begin":25,"end":31},"obj":"JJ"},{"id":"T1689","span":{"begin":32,"end":48},"obj":"JJ"},{"id":"T1690","span":{"begin":49,"end":57},"obj":"NN"},{"id":"T1691","span":{"begin":58,"end":66},"obj":"VB"},{"id":"T1692","span":{"begin":67,"end":69},"obj":"IN"},{"id":"T1693","span":{"begin":70,"end":71},"obj":"DT"},{"id":"T1694","span":{"begin":72,"end":76},"obj":"JJ"},{"id":"T1695","span":{"begin":77,"end":85},"obj":"NN"},{"id":"T1696","span":{"begin":86,"end":88},"obj":"IN"},{"id":"T1697","span":{"begin":89,"end":97},"obj":"JJ"},{"id":"T1698","span":{"begin":98,"end":107},"obj":"NN"},{"id":"T1699","span":{"begin":109,"end":120},"obj":"RB"},{"id":"T1700","span":{"begin":120,"end":121},"obj":"-COMMA-"},{"id":"T1701","span":{"begin":122,"end":127},"obj":"NN"},{"id":"T1702","span":{"begin":128,"end":137},"obj":"NN"},{"id":"T1703","span":{"begin":138,"end":141},"obj":"MD"},{"id":"T1704","span":{"begin":142,"end":144},"obj":"VB"},{"id":"T1705","span":{"begin":145,"end":155},"obj":"VB"},{"id":"T1706","span":{"begin":156,"end":158},"obj":"IN"},{"id":"T1707","span":{"begin":159,"end":165},"obj":"JJ"},{"id":"T1708","span":{"begin":166,"end":171},"obj":"NN"}],"relations":[{"id":"R1373","pred":"arg1Of","subj":"T1685","obj":"T1684"},{"id":"R1374","pred":"arg1Of","subj":"T1685","obj":"T1686"},{"id":"R1375","pred":"arg2Of","subj":"T1690","obj":"T1686"},{"id":"R1376","pred":"arg1Of","subj":"T1690","obj":"T1687"},{"id":"R1377","pred":"arg1Of","subj":"T1690","obj":"T1688"},{"id":"R1378","pred":"arg1Of","subj":"T1690","obj":"T1689"},{"id":"R1379","pred":"arg2Of","subj":"T1690","obj":"T1691"},{"id":"R1380","pred":"arg1Of","subj":"T1691","obj":"T1692"},{"id":"R1381","pred":"arg2Of","subj":"T1695","obj":"T1692"},{"id":"R1382","pred":"arg1Of","subj":"T1695","obj":"T1693"},{"id":"R1383","pred":"arg1Of","subj":"T1695","obj":"T1694"},{"id":"R1384","pred":"arg1Of","subj":"T1695","obj":"T1696"},{"id":"R1385","pred":"arg2Of","subj":"T1698","obj":"T1696"},{"id":"R1386","pred":"arg1Of","subj":"T1698","obj":"T1697"},{"id":"R1387","pred":"arg1Of","subj":"T1702","obj":"T1701"},{"id":"R1388","pred":"arg1Of","subj":"T1702","obj":"T1703"},{"id":"R1389","pred":"arg1Of","subj":"T1702","obj":"T1704"},{"id":"R1390","pred":"arg2Of","subj":"T1702","obj":"T1705"},{"id":"R1391","pred":"arg2Of","subj":"T1705","obj":"T1703"},{"id":"R1392","pred":"arg2Of","subj":"T1705","obj":"T1704"},{"id":"R1393","pred":"arg1Of","subj":"T1705","obj":"T1706"},{"id":"R1395","pred":"arg2Of","subj":"T1708","obj":"T1706"},{"id":"R1396","pred":"arg1Of","subj":"T1708","obj":"T1707"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":" production.3 TNF-α is a potent pro-inflammatory cytokine involved in a wide spectrum of cellular responses. Furthermore, TNF-α synthesis can be attenuated in immune cells ex"}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1236","span":{"begin":1,"end":11},"obj":"NN"},{"id":"T1237","span":{"begin":11,"end":13},"obj":"CD"},{"id":"T1238","span":{"begin":14,"end":19},"obj":"NNP"},{"id":"T1239","span":{"begin":20,"end":22},"obj":"VBZ"},{"id":"T1240","span":{"begin":23,"end":24},"obj":"DT"},{"id":"T1241","span":{"begin":25,"end":31},"obj":"JJ"},{"id":"T1242","span":{"begin":32,"end":48},"obj":"JJ"},{"id":"T1243","span":{"begin":49,"end":57},"obj":"NN"},{"id":"T1244","span":{"begin":58,"end":66},"obj":"VBN"},{"id":"T1245","span":{"begin":67,"end":69},"obj":"IN"},{"id":"T1246","span":{"begin":70,"end":71},"obj":"DT"},{"id":"T1247","span":{"begin":72,"end":76},"obj":"JJ"},{"id":"T1248","span":{"begin":77,"end":85},"obj":"NN"},{"id":"T1249","span":{"begin":86,"end":88},"obj":"IN"},{"id":"T1250","span":{"begin":89,"end":97},"obj":"JJ"},{"id":"T1251","span":{"begin":98,"end":107},"obj":"NNS"},{"id":"T1252","span":{"begin":107,"end":108},"obj":"."},{"id":"T1253","span":{"begin":109,"end":120},"obj":"RB"},{"id":"T1254","span":{"begin":120,"end":121},"obj":","},{"id":"T1255","span":{"begin":122,"end":127},"obj":"JJ"},{"id":"T1256","span":{"begin":128,"end":137},"obj":"NN"},{"id":"T1257","span":{"begin":138,"end":141},"obj":"MD"},{"id":"T1258","span":{"begin":142,"end":144},"obj":"VB"},{"id":"T1259","span":{"begin":145,"end":155},"obj":"VBN"},{"id":"T1260","span":{"begin":156,"end":158},"obj":"IN"},{"id":"T1261","span":{"begin":159,"end":165},"obj":"JJ"},{"id":"T1262","span":{"begin":166,"end":171},"obj":"NNS"}],"relations":[{"id":"R922","pred":"compound","subj":"T1236","obj":"T1238"},{"id":"R923","pred":"nummod","subj":"T1237","obj":"T1238"},{"id":"R939","pred":"advmod","subj":"T1253","obj":"T1259"},{"id":"R940","pred":"punct","subj":"T1254","obj":"T1259"},{"id":"R941","pred":"amod","subj":"T1255","obj":"T1256"},{"id":"R942","pred":"nsubjpass","subj":"T1256","obj":"T1259"},{"id":"R943","pred":"aux","subj":"T1257","obj":"T1259"},{"id":"R944","pred":"auxpass","subj":"T1258","obj":"T1259"},{"id":"R945","pred":"ROOT","subj":"T1259","obj":"T1259"},{"id":"R946","pred":"prep","subj":"T1260","obj":"T1259"},{"id":"R947","pred":"amod","subj":"T1261","obj":"T1262"},{"id":"R948","pred":"pobj","subj":"T1262","obj":"T1260"},{"id":"R926","pred":"det","subj":"T1240","obj":"T1243"},{"id":"R927","pred":"amod","subj":"T1241","obj":"T1243"},{"id":"R928","pred":"amod","subj":"T1242","obj":"T1243"},{"id":"R929","pred":"attr","subj":"T1243","obj":"T1239"},{"id":"R930","pred":"acl","subj":"T1244","obj":"T1243"},{"id":"R931","pred":"prep","subj":"T1245","obj":"T1244"},{"id":"R932","pred":"det","subj":"T1246","obj":"T1248"},{"id":"R933","pred":"amod","subj":"T1247","obj":"T1248"},{"id":"R934","pred":"pobj","subj":"T1248","obj":"T1245"},{"id":"R935","pred":"prep","subj":"T1249","obj":"T1248"},{"id":"R936","pred":"amod","subj":"T1250","obj":"T1251"},{"id":"R937","pred":"pobj","subj":"T1251","obj":"T1249"}],"text":" production.3 TNF-α is a potent pro-inflammatory cytokine involved in a wide spectrum of cellular responses. Furthermore, TNF-α synthesis can be attenuated in immune cells ex"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T2134","span":{"begin":128,"end":137},"obj":"http://purl.obolibrary.org/obo/GO_0009058"},{"id":"T2147","span":{"begin":89,"end":97},"obj":"http://purl.obolibrary.org/obo/GO_0007349"}],"text":" production.3 TNF-α is a potent pro-inflammatory cytokine involved in a wide spectrum of cellular responses. Furthermore, TNF-α synthesis can be attenuated in immune cells ex"}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T2222","span":{"begin":166,"end":171},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":" production.3 TNF-α is a potent pro-inflammatory cytokine involved in a wide spectrum of cellular responses. Furthermore, TNF-α synthesis can be attenuated in immune cells ex"}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T2372","span":{"begin":1,"end":11},"obj":"Gene_expression"},{"id":"T2373","span":{"begin":14,"end":19},"obj":"Protein"},{"id":"T2374","span":{"begin":122,"end":127},"obj":"Protein"},{"id":"T2375","span":{"begin":128,"end":137},"obj":"Gene_expression"},{"id":"T2376","span":{"begin":145,"end":155},"obj":"Negative_regulation"}],"relations":[{"id":"R1834","pred":"themeOf","subj":"T2374","obj":"T2375"},{"id":"R1836","pred":"themeOf","subj":"T2375","obj":"T2376"}],"text":" production.3 TNF-α is a potent pro-inflammatory cytokine involved in a wide spectrum of cellular responses. Furthermore, TNF-α synthesis can be attenuated in immune cells ex"}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T2239","span":{"begin":14,"end":19},"obj":"Protein"},{"id":"T2242","span":{"begin":122,"end":127},"obj":"Protein"},{"id":"T2246","span":{"begin":128,"end":137},"obj":"Gene_expression"},{"id":"T2247","span":{"begin":145,"end":155},"obj":"Negative_regulation"}],"relations":[{"id":"R1754","pred":"themeOf","subj":"T2242","obj":"T2246"},{"id":"R1758","pred":"themeOf","subj":"T2246","obj":"T2247"}],"text":" production.3 TNF-α is a potent pro-inflammatory cytokine involved in a wide spectrum of cellular responses. Furthermore, TNF-α synthesis can be attenuated in immune cells ex"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2046","span":{"begin":14,"end":17},"obj":"P01375"},{"id":"T2047","span":{"begin":14,"end":19},"obj":"P01375"},{"id":"T2048","span":{"begin":122,"end":125},"obj":"P01375"},{"id":"T2049","span":{"begin":122,"end":127},"obj":"P01375"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":" production.3 TNF-α is a potent pro-inflammatory cytokine involved in a wide spectrum of cellular responses. Furthermore, TNF-α synthesis can be attenuated in immune cells ex"}

    test2

    {"project":"test2","denotations":[{"id":"T1106","span":{"begin":1,"end":11},"obj":"Gene_expression"},{"id":"T1107","span":{"begin":14,"end":19},"obj":"Protein"},{"id":"T1108","span":{"begin":122,"end":127},"obj":"Protein"},{"id":"T1109","span":{"begin":128,"end":137},"obj":"Gene_expression"},{"id":"T1110","span":{"begin":145,"end":155},"obj":"Negative_regulation"}],"relations":[{"id":"R823","pred":"themeOf","subj":"T1108","obj":"T1109"},{"id":"R824","pred":"themeOf","subj":"T1109","obj":"T1110"}],"text":" production.3 TNF-α is a potent pro-inflammatory cytokine involved in a wide spectrum of cellular responses. Furthermore, TNF-α synthesis can be attenuated in immune cells ex"}