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PMC:2664230 / 2399-2601 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1126 159-168 Regulation denotes regulator
T1127 172-195 Protein denotes tumor necrosis factor-α
T1128 197-202 Protein denotes TNF-α
R833 T1128 T1127 equivalentTo TNF-α,tumor necrosis factor-α

2_test

Id Subject Object Predicate Lexical cue
18568240-12168567-22101112 86-87 12168567 denotes 2

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1650 0-9 NN denotes synthesis
T1651 9-10 -COMMA- denotes ,
T1652 11-13 VB denotes is
T1653 14-15 DT denotes a
T1654 16-24 JJ denotes critical
T1655 25-32 NN denotes element
T1656 33-35 IN denotes in
T1657 36-39 DT denotes the
T1658 40-47 NN denotes defense
T1659 48-57 NN denotes mechanism
T1660 58-60 IN denotes of
T1661 61-64 DT denotes the
T1662 65-69 NN denotes host
T1663 70-76 JJ denotes immune
T1664 77-87 NN denotes system.1,2
T1665 88-99 JJ denotes LPS-induced
T1666 100-113 NN denotes transcription
T1667 114-120 NN denotes factor
T1668 121-131 NN denotes activation
T1669 132-135 VB denotes has
T1670 136-140 VB denotes been
T1671 141-146 VB denotes shown
T1672 147-149 TO denotes to
T1673 150-152 VB denotes be
T1674 153-154 DT denotes a
T1675 155-158 JJ denotes key
T1676 159-168 NN denotes regulator
T1677 169-171 IN denotes of
T1678 172-177 NN denotes tumor
T1679 178-186 NN denotes necrosis
T1680 187-195 NN denotes factor-α
T1681 196-197 -LRB- denotes (
T1682 197-202 NN denotes TNF-α
R1338 T1652 T1651 arg1Of is,","
R1339 T1655 T1652 arg2Of element,is
R1340 T1655 T1653 arg1Of element,a
R1341 T1655 T1654 arg1Of element,critical
R1342 T1655 T1656 arg1Of element,in
R1343 T1659 T1656 arg2Of mechanism,in
R1344 T1659 T1657 arg1Of mechanism,the
R1345 T1659 T1658 arg1Of mechanism,defense
R1346 T1659 T1660 arg1Of mechanism,of
R1347 T1664 T1660 arg2Of "system.1,2",of
R1348 T1664 T1661 arg1Of "system.1,2",the
R1349 T1664 T1662 arg1Of "system.1,2",host
R1350 T1664 T1663 arg1Of "system.1,2",immune
R1351 T1668 T1665 arg1Of activation,LPS-induced
R1352 T1668 T1666 arg1Of activation,transcription
R1353 T1668 T1667 arg1Of activation,factor
R1354 T1668 T1669 arg1Of activation,has
R1355 T1668 T1670 arg1Of activation,been
R1356 T1668 T1671 arg2Of activation,shown
R1357 T1668 T1673 arg1Of activation,be
R1358 T1671 T1669 arg2Of shown,has
R1359 T1671 T1670 arg2Of shown,been
R1360 T1673 T1671 arg3Of be,shown
R1361 T1673 T1672 arg1Of be,to
R1362 T1676 T1673 arg2Of regulator,be
R1363 T1676 T1674 arg1Of regulator,a
R1364 T1676 T1675 arg1Of regulator,key
R1365 T1676 T1677 arg1Of regulator,of
R1367 T1680 T1677 arg2Of factor-α,of
R1368 T1680 T1678 arg1Of factor-α,tumor
R1369 T1680 T1679 arg1Of factor-α,necrosis
R1370 T1682 T1681 arg2Of TNF-α,(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1201 0-9 NN denotes synthesis
T1202 9-10 , denotes ,
T1203 11-13 VBZ denotes is
T1204 14-15 DT denotes a
T1205 16-24 JJ denotes critical
T1206 25-32 NN denotes element
T1207 33-35 IN denotes in
T1208 36-39 DT denotes the
T1209 40-47 NN denotes defense
T1210 48-57 NN denotes mechanism
T1211 58-60 IN denotes of
T1212 61-64 DT denotes the
T1213 65-69 NN denotes host
T1214 70-76 JJ denotes immune
T1215 77-83 NN denotes system
T1216 83-87 CD denotes .1,2
T1217 88-99 JJ denotes LPS-induced
T1218 100-113 NN denotes transcription
T1219 114-120 NN denotes factor
T1220 121-131 NN denotes activation
T1221 132-135 VBZ denotes has
T1222 136-140 VBN denotes been
T1223 141-146 VBN denotes shown
T1224 147-149 TO denotes to
T1225 150-152 VB denotes be
T1226 153-154 DT denotes a
T1227 155-158 JJ denotes key
T1228 159-168 NN denotes regulator
T1229 169-171 IN denotes of
T1230 172-177 NN denotes tumor
T1231 178-186 NN denotes necrosis
T1232 187-195 NN denotes factor-α
T1233 196-197 -LRB- denotes (
T1234 197-202 NNP denotes TNF-α
R888 T1202 T1203 punct ",",is
R889 T1203 T1203 ROOT is,is
R890 T1204 T1206 det a,element
R891 T1205 T1206 amod critical,element
R892 T1206 T1203 attr element,is
R893 T1207 T1206 prep in,element
R894 T1208 T1210 det the,mechanism
R895 T1209 T1210 compound defense,mechanism
R896 T1210 T1207 pobj mechanism,in
R897 T1211 T1210 prep of,mechanism
R898 T1212 T1215 det the,system
R899 T1213 T1215 nmod host,system
R900 T1214 T1215 amod immune,system
R901 T1215 T1211 pobj system,of
R902 T1216 T1220 nummod ".1,2",activation
R903 T1217 T1220 amod LPS-induced,activation
R904 T1218 T1219 compound transcription,factor
R905 T1219 T1220 compound factor,activation
R906 T1220 T1223 nsubjpass activation,shown
R907 T1221 T1223 aux has,shown
R908 T1222 T1223 auxpass been,shown
R909 T1223 T1223 ROOT shown,shown
R910 T1224 T1225 aux to,be
R911 T1225 T1223 xcomp be,shown
R912 T1226 T1228 det a,regulator
R913 T1227 T1228 amod key,regulator
R914 T1228 T1225 attr regulator,be
R915 T1229 T1228 prep of,regulator
R916 T1230 T1231 compound tumor,necrosis
R917 T1231 T1232 compound necrosis,factor-α
R918 T1232 T1229 pobj factor-α,of
R919 T1233 T1234 punct (,TNF-α
R920 T1234 T1232 appos TNF-α,factor-α

UBERON-AE

Id Subject Object Predicate Lexical cue
T1125 70-83 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system

GO-BP

Id Subject Object Predicate Lexical cue
T2115 100-113 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T2122 100-131 http://purl.obolibrary.org/obo/GO_0051091 denotes transcription factor activation
T2125 100-131 http://purl.obolibrary.org/obo/GO_0032793 denotes transcription factor activation
T2130 100-131 http://purl.obolibrary.org/obo/GO_1901485 denotes transcription factor activation
T2133 0-9 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T2135 178-186 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T2136 178-186 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T2137 178-186 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T2138 178-186 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis

GO-MF

Id Subject Object Predicate Lexical cue
T2192 100-131 http://purl.obolibrary.org/obo/GO_0033613 denotes transcription factor activation

GO-CC

Id Subject Object Predicate Lexical cue
T2216 65-69 http://purl.obolibrary.org/obo/GO_0018995 denotes host

events-check-again

Id Subject Object Predicate Lexical cue
T2369 159-168 Regulation denotes regulator
T2370 172-195 Protein denotes tumor necrosis factor-α
T2371 197-202 Protein denotes TNF-α
R1832 T2371 T2370 equivalentTo TNF-α,tumor necrosis factor-α

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2237 172-195 Protein denotes tumor necrosis factor-α
T2238 197-202 Protein denotes TNF-α
T2240 159-168 Regulation denotes regulator
T2241 159-168 Regulation denotes regulator
R1752 T2237 T2240 themeOf tumor necrosis factor-α,regulator
R1753 T2238 T2241 themeOf TNF-α,regulator

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2043 172-193 P01375 denotes tumor necrosis factor
T2044 197-200 P01375 denotes TNF
T2045 197-202 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T1103 159-168 Regulation denotes regulator
T1104 172-195 Protein denotes tumor necrosis factor-α
T1105 197-202 Protein denotes TNF-α
R821 T1105 T1104 equivalentTo TNF-α,tumor necrosis factor-α