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PMC:2664230 / 20850-21146 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T8325 53-66 Negative_regulation denotes downregulates
T8326 53-66 Negative_regulation denotes downregulates
T8327 53-66 Negative_regulation denotes downregulates
T8328 79-84 Protein denotes I-κBα
T8329 85-100 Phosphorylation denotes phosphorylation
T8330 116-119 Protein denotes p65
T8331 120-135 Phosphorylation denotes phosphorylation
T8332 136-149 Localization denotes translocation
T8333 274-279 Protein denotes I-κBα
T8334 280-295 Phosphorylation denotes phosphorylation
R6802 T8328 T8329 themeOf I-κBα,phosphorylation
R6803 T8329 T8326 themeOf phosphorylation,downregulates
R6804 T8330 T8331 themeOf p65,phosphorylation
R6805 T8330 T8332 themeOf p65,translocation
R6806 T8331 T8325 themeOf phosphorylation,downregulates
R6807 T8332 T8327 themeOf translocation,downregulates
R6808 T8333 T8334 themeOf I-κBα,phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9008 0-2 IN denotes In
T9009 3-7 DT denotes this
T9010 8-11 NN denotes set
T9011 12-14 IN denotes of
T9012 15-26 NNS denotes experiments
T9013 26-27 , denotes ,
T9014 28-30 PRP denotes we
T9015 31-43 VBD denotes demonstrated
T9016 44-48 IN denotes that
T9017 49-52 NNP denotes PTX
T9018 53-66 VBZ denotes downregulates
T9019 67-78 JJ denotes cytoplasmic
T9020 79-84 JJ denotes I-κBα
T9021 85-100 NN denotes phosphorylation
T9022 100-101 , denotes ,
T9023 102-109 JJ denotes nuclear
T9024 110-115 NNP denotes NF-κB
T9025 116-119 CD denotes p65
T9026 120-149 NN denotes phosphorylation/translocation
T9027 149-150 , denotes ,
T9028 151-153 RB denotes as
T9029 154-158 RB denotes well
T9030 159-161 IN denotes as
T9031 162-167 NNP denotes NF-κB
T9032 168-179 NNP denotes DNA-binding
T9033 180-185 IN denotes after
T9034 186-189 NNP denotes LPS
T9035 190-201 NN denotes stimulation
T9036 201-202 , denotes ,
T9037 203-213 VBG denotes suggesting
T9038 214-218 IN denotes that
T9039 219-222 NNP denotes PTX
T9040 223-229 VBZ denotes exerts
T9041 230-233 PRP$ denotes its
T9042 234-242 NN denotes function
T9043 243-251 NN denotes proximal
T9044 252-254 TO denotes to
T9045 255-257 CC denotes or
T9046 258-260 IN denotes at
T9047 261-264 DT denotes the
T9048 265-270 NN denotes level
T9049 271-273 IN denotes of
T9050 274-279 JJ denotes I-κBα
T9051 280-295 NN denotes phosphorylation
T9052 295-296 . denotes .
R7429 T9008 T9015 prep In,demonstrated
R7430 T9009 T9010 det this,set
R7431 T9010 T9008 pobj set,In
R7432 T9011 T9010 prep of,set
R7433 T9012 T9011 pobj experiments,of
R7434 T9013 T9015 punct ",",demonstrated
R7435 T9014 T9015 nsubj we,demonstrated
R7436 T9015 T9015 ROOT demonstrated,demonstrated
R7437 T9016 T9018 mark that,downregulates
R7438 T9017 T9018 nsubj PTX,downregulates
R7439 T9018 T9015 ccomp downregulates,demonstrated
R7440 T9019 T9021 nmod cytoplasmic,phosphorylation
R7441 T9020 T9021 amod I-κBα,phosphorylation
R7442 T9021 T9018 dobj phosphorylation,downregulates
R7443 T9022 T9021 punct ",",phosphorylation
R7444 T9023 T9026 amod nuclear,phosphorylation/translocation
R7445 T9024 T9026 nmod NF-κB,phosphorylation/translocation
R7446 T9025 T9026 nummod p65,phosphorylation/translocation
R7447 T9026 T9021 appos phosphorylation/translocation,phosphorylation
R7448 T9027 T9026 punct ",",phosphorylation/translocation
R7449 T9028 T9030 advmod as,as
R7450 T9029 T9030 advmod well,as
R7451 T9030 T9026 cc as,phosphorylation/translocation
R7452 T9031 T9032 compound NF-κB,DNA-binding
R7453 T9032 T9033 compound DNA-binding,after
R7454 T9033 T9018 prep after,downregulates
R7455 T9034 T9035 compound LPS,stimulation
R7456 T9035 T9033 pobj stimulation,after
R7457 T9036 T9018 punct ",",downregulates
R7458 T9037 T9018 advcl suggesting,downregulates
R7459 T9038 T9040 mark that,exerts
R7460 T9039 T9040 nsubj PTX,exerts
R7461 T9040 T9037 ccomp exerts,suggesting
R7462 T9041 T9043 poss its,proximal
R7463 T9042 T9043 compound function,proximal
R7464 T9043 T9040 dobj proximal,exerts
R7465 T9044 T9043 prep to,proximal
R7466 T9045 T9044 cc or,to
R7467 T9046 T9040 prep at,exerts
R7468 T9047 T9048 det the,level
R7469 T9048 T9046 pobj level,at
R7470 T9049 T9048 prep of,level
R7471 T9050 T9051 amod I-κBα,phosphorylation
R7472 T9051 T9049 pobj phosphorylation,of
R7473 T9052 T9015 punct .,demonstrated

GO-BP

Id Subject Object Predicate Lexical cue
T9916 85-100 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T9917 120-135 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T9918 280-295 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-MF

Id Subject Object Predicate Lexical cue
T10049 168-179 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA-binding
T10053 172-179 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T8389 0-296 Sentence denotes In this set of experiments, we demonstrated that PTX downregulates cytoplasmic I-κBα phosphorylation, nuclear NF-κB p65 phosphorylation/translocation, as well as NF-κB DNA-binding after LPS stimulation, suggesting that PTX exerts its function proximal to or at the level of I-κBα phosphorylation.
T145 0-296 Sentence denotes In this set of experiments, we demonstrated that PTX downregulates cytoplasmic I-κBα phosphorylation, nuclear NF-κB p65 phosphorylation/translocation, as well as NF-κB DNA-binding after LPS stimulation, suggesting that PTX exerts its function proximal to or at the level of I-κBα phosphorylation.

events-check-again

Id Subject Object Predicate Lexical cue
T10608 53-66 Negative_regulation denotes downregulates
T10609 53-66 Negative_regulation denotes downregulates
T10610 53-66 Negative_regulation denotes downregulates
T10611 79-84 Protein denotes I-κBα
T10612 85-100 Phosphorylation denotes phosphorylation
T10613 116-119 Protein denotes p65
T10614 120-135 Phosphorylation denotes phosphorylation
T10615 136-149 Localization denotes translocation
T10616 274-279 Protein denotes I-κBα
T10617 280-295 Phosphorylation denotes phosphorylation
R8470 T10611 T10612 themeOf I-κBα,phosphorylation
R8477 T10612 T10609 themeOf phosphorylation,downregulates
R8479 T10613 T10614 themeOf p65,phosphorylation
R8480 T10613 T10615 themeOf p65,translocation
R8481 T10614 T10608 themeOf phosphorylation,downregulates
R8482 T10615 T10610 themeOf translocation,downregulates
R8483 T10616 T10617 themeOf I-κBα,phosphorylation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T10192 81-84 Protein denotes κBα
T10193 116-119 Protein denotes p65
T10194 162-167 Protein denotes NF-κB
T10195 219-222 Protein denotes PTX
T10196 274-279 Protein denotes I-κBα
T10197 85-100 Phosphorylation denotes phosphorylation
T10198 102-109 Entity denotes nuclear
T10199 120-149 Phosphorylation denotes phosphorylation/translocation
T10200 168-179 Binding denotes DNA-binding
T10201 280-295 Phosphorylation denotes phosphorylation
T10202 53-66 Negative_regulation denotes downregulates
T10203 53-66 Negative_regulation denotes downregulates
T10204 53-66 Negative_regulation denotes downregulates
T10205 265-270 Positive_regulation denotes level
R8263 T10192 T10197 themeOf κBα,phosphorylation
R8264 T10193 T10199 themeOf p65,phosphorylation/translocation
R8265 T10194 T10200 themeOf NF-κB,DNA-binding
R8267 T10196 T10201 themeOf I-κBα,phosphorylation
R8268 T10197 T10202 themeOf phosphorylation,downregulates
R8269 T10198 T10199 Site nuclear,phosphorylation/translocation
R8270 T10199 T10203 themeOf phosphorylation/translocation,downregulates
R8271 T10200 T10204 themeOf DNA-binding,downregulates
R8273 T10201 T10205 themeOf phosphorylation,level

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9740 116-119 Q04206 denotes p65
T9741 116-119 P21579 denotes p65

test2

Id Subject Object Predicate Lexical cue Negation
T8226 53-66 Negative_regulation denotes downregulates
T8227 79-84 Protein denotes I-κBα
T8228 85-100 Phosphorylation denotes phosphorylation
T8229 116-119 Protein denotes p65
T8230 120-135 Phosphorylation denotes phosphorylation
T8231 136-149 Localization denotes translocation
T8232 172-179 Binding denotes binding true
T8233 274-279 Protein denotes I-κBα
T8234 280-295 Phosphorylation denotes phosphorylation
R6740 T8227 T8228 themeOf I-κBα,phosphorylation
R6741 T8228 T8226 themeOf phosphorylation,downregulates
R6742 T8229 T8232 themeOf p65,binding
R6743 T8229 T8231 themeOf p65,translocation
R6744 T8229 T8230 themeOf p65,phosphorylation
R6745 T8230 T8226 themeOf phosphorylation,downregulates
R6746 T8231 T8226 themeOf translocation,downregulates
R6747 T8232 T8226 themeOf binding,downregulates
R6748 T8233 T8234 themeOf I-κBα,phosphorylation