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    bionlp-st-ge-2016-reference

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    pmc-enju-pas

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objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.\n\nINTRODUCTION\nThe production of TNF-α following LPS stimulation is one of the key steps in bacterial sepsis and inflammation. The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.\n\nMETHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I-κBα phosphorylation, nuclear p65 phosphorylation, and the DNA binding activity of NF-κB. In contrast, PTX markedly enhanced the phosphorylation and DNA binding activity of CREB. Cells concomitantly treated with PTX and LPS secreted similar levels of TNF-α in the presence and absence Protein kinase A inhibition.\n\nDISCUSSION\nThe increased level of cAMP that results from phosphodiesterase inhibition affects cytoplasmic and nuclear events, resulting in the attenuation of NF-κB and the activation of CREB transcriptional DNA binding through pathways that are partially Protein kinase A-independent.\n\nCONCLUSION\nPTX-mediated phosphodiesterase inhibition occurs partially through a Protein kinase A-independent pathway and may serve as a useful tool in the attenuation of LPS-induced inflammation. "}

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objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.\n\nINTRODUCTION\nThe production of TNF-α following LPS stimulation is one of the key steps in bacterial sepsis and inflammation. The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.\n\nMETHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I-κBα phosphorylation, nuclear p65 phosphorylation, and the DNA binding activity of NF-κB. In contrast, PTX markedly enhanced the phosphorylation and DNA binding activity of CREB. Cells concomitantly treated with PTX and LPS secreted similar levels of TNF-α in the presence and absence Protein kinase A inhibition.\n\nDISCUSSION\nThe increased level of cAMP that results from phosphodiesterase inhibition affects cytoplasmic and nuclear events, resulting in the attenuation of NF-κB and the activation of CREB transcriptional DNA binding through pathways that are partially Protein kinase A-independent.\n\nCONCLUSION\nPTX-mediated phosphodiesterase inhibition occurs partially through a Protein kinase A-independent pathway and may serve as a useful tool in the attenuation of LPS-induced inflammation. "}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T826","span":{"begin":178,"end":195},"obj":"http://purl.obolibrary.org/obo/GO_0032680"},{"id":"T827","span":{"begin":278,"end":297},"obj":"http://purl.obolibrary.org/obo/GO_0032680"},{"id":"T828","span":{"begin":445,"end":461},"obj":"http://purl.obolibrary.org/obo/GO_0032680"},{"id":"T834","span":{"begin":178,"end":195},"obj":"http://purl.obolibrary.org/obo/GO_0032640"},{"id":"T835","span":{"begin":278,"end":297},"obj":"http://purl.obolibrary.org/obo/GO_0032640"},{"id":"T836","span":{"begin":278,"end":295},"obj":"http://purl.obolibrary.org/obo/GO_0032640"},{"id":"T838","span":{"begin":81,"end":98},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T839","span":{"begin":409,"end":426},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T840","span":{"begin":645,"end":662},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T841","span":{"begin":1527,"end":1544},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T842","span":{"begin":1780,"end":1797},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T843","span":{"begin":99,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_1901484"},{"id":"T844","span":{"begin":99,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0043433"},{"id":"T845","span":{"begin":99,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0032792"},{"id":"T846","span":{"begin":113,"end":126},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T847","span":{"begin":1661,"end":1676},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T848","span":{"begin":113,"end":144},"obj":"http://purl.obolibrary.org/obo/GO_0051091"},{"id":"T849","span":{"begin":113,"end":144},"obj":"http://purl.obolibrary.org/obo/GO_0032793"},{"id":"T850","span":{"begin":1642,"end":1660},"obj":"http://purl.obolibrary.org/obo/GO_0032793"},{"id":"T851","span":{"begin":113,"end":144},"obj":"http://purl.obolibrary.org/obo/GO_1901485"},{"id":"T852","span":{"begin":155,"end":163},"obj":"http://purl.obolibrary.org/obo/GO_0001906"},{"id":"T853","span":{"begin":155,"end":163},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T854","span":{"begin":155,"end":163},"obj":"http://purl.obolibrary.org/obo/GO_0019835"},{"id":"T855","span":{"begin":155,"end":163},"obj":"http://purl.obolibrary.org/obo/GO_0070265"},{"id":"T856","span":{"begin":372,"end":384},"obj":"http://purl.obolibrary.org/obo/GO_0006954"},{"id":"T857","span":{"begin":1938,"end":1950},"obj":"http://purl.obolibrary.org/obo/GO_0006954"},{"id":"T858","span":{"begin":645,"end":672},"obj":"http://purl.obolibrary.org/obo/GO_0051344"},{"id":"T859","span":{"begin":771,"end":784},"obj":"http://purl.obolibrary.org/obo/GO_0051591"},{"id":"T860","span":{"begin":1160,"end":1175},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T861","span":{"begin":1189,"end":1204},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T862","span":{"begin":1284,"end":1299},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T863","span":{"begin":1628,"end":1652},"obj":"http://purl.obolibrary.org/obo/GO_0051092"}],"text":"OBJECTIVE\nThe objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.\n\nINTRODUCTION\nThe production of TNF-α following LPS stimulation is one of the key steps in bacterial sepsis and inflammation. The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.\n\nMETHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I-κBα phosphorylation, nuclear p65 phosphorylation, and the DNA binding activity of NF-κB. In contrast, PTX markedly enhanced the phosphorylation and DNA binding activity of CREB. Cells concomitantly treated with PTX and LPS secreted similar levels of TNF-α in the presence and absence Protein kinase A inhibition.\n\nDISCUSSION\nThe increased level of cAMP that results from phosphodiesterase inhibition affects cytoplasmic and nuclear events, resulting in the attenuation of NF-κB and the activation of CREB transcriptional DNA binding through pathways that are partially Protein kinase A-independent.\n\nCONCLUSION\nPTX-mediated phosphodiesterase inhibition occurs partially through a Protein kinase A-independent pathway and may serve as a useful tool in the attenuation of LPS-induced inflammation. "}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T865","span":{"begin":81,"end":98},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T866","span":{"begin":409,"end":426},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T867","span":{"begin":645,"end":662},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T868","span":{"begin":1527,"end":1544},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T869","span":{"begin":1780,"end":1797},"obj":"http://purl.obolibrary.org/obo/GO_0008081"},{"id":"T870","span":{"begin":793,"end":800},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T871","span":{"begin":835,"end":842},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T872","span":{"begin":1218,"end":1225},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T873","span":{"begin":1308,"end":1315},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T874","span":{"begin":1681,"end":1688},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T875","span":{"begin":793,"end":808},"obj":"http://purl.obolibrary.org/obo/GO_0005515"},{"id":"T876","span":{"begin":831,"end":842},"obj":"http://purl.obolibrary.org/obo/GO_0003677"},{"id":"T877","span":{"begin":1214,"end":1225},"obj":"http://purl.obolibrary.org/obo/GO_0003677"},{"id":"T878","span":{"begin":1304,"end":1315},"obj":"http://purl.obolibrary.org/obo/GO_0003677"},{"id":"T879","span":{"begin":1677,"end":1688},"obj":"http://purl.obolibrary.org/obo/GO_0003677"},{"id":"T880","span":{"begin":835,"end":851},"obj":"http://purl.obolibrary.org/obo/GO_0051059"}],"text":"OBJECTIVE\nThe objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.\n\nINTRODUCTION\nThe production of TNF-α following LPS stimulation is one of the key steps in bacterial sepsis and inflammation. The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.\n\nMETHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I-κBα phosphorylation, nuclear p65 phosphorylation, and the DNA binding activity of NF-κB. In contrast, PTX markedly enhanced the phosphorylation and DNA binding activity of CREB. Cells concomitantly treated with PTX and LPS secreted similar levels of TNF-α in the presence and absence Protein kinase A inhibition.\n\nDISCUSSION\nThe increased level of cAMP that results from phosphodiesterase inhibition affects cytoplasmic and nuclear events, resulting in the attenuation of NF-κB and the activation of CREB transcriptional DNA binding through pathways that are partially Protein kinase A-independent.\n\nCONCLUSION\nPTX-mediated phosphodiesterase inhibition occurs partially through a Protein kinase A-independent pathway and may serve as a useful tool in the attenuation of LPS-induced inflammation. "}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T881","span":{"begin":253,"end":258},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T882","span":{"begin":529,"end":534},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T883","span":{"begin":977,"end":982},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"OBJECTIVE\nThe objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.\n\nINTRODUCTION\nThe production of TNF-α following LPS stimulation is one of the key steps in bacterial sepsis and inflammation. The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.\n\nMETHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I-κBα phosphorylation, nuclear p65 phosphorylation, and the DNA binding activity of NF-κB. In contrast, PTX markedly enhanced the phosphorylation and DNA binding activity of CREB. Cells concomitantly treated with PTX and LPS secreted similar levels of TNF-α in the presence and absence Protein kinase A inhibition.\n\nDISCUSSION\nThe increased level of cAMP that results from phosphodiesterase inhibition affects cytoplasmic and nuclear events, resulting in the attenuation of NF-κB and the activation of CREB transcriptional DNA binding through pathways that are partially Protein kinase A-independent.\n\nCONCLUSION\nPTX-mediated phosphodiesterase inhibition occurs partially through a Protein kinase A-independent pathway and may serve as a useful tool in the attenuation of LPS-induced inflammation. "}

    sentences

    {"project":"sentences","denotations":[{"id":"T112","span":{"begin":0,"end":9},"obj":"Sentence"},{"id":"T113","span":{"begin":10,"end":259},"obj":"Sentence"},{"id":"T114","span":{"begin":261,"end":273},"obj":"Sentence"},{"id":"T115","span":{"begin":274,"end":385},"obj":"Sentence"},{"id":"T116","span":{"begin":386,"end":501},"obj":"Sentence"},{"id":"T117","span":{"begin":503,"end":510},"obj":"Sentence"},{"id":"T118","span":{"begin":511,"end":673},"obj":"Sentence"},{"id":"T119","span":{"begin":674,"end":830},"obj":"Sentence"},{"id":"T120","span":{"begin":831,"end":914},"obj":"Sentence"},{"id":"T121","span":{"begin":915,"end":1087},"obj":"Sentence"},{"id":"T122","span":{"begin":1089,"end":1096},"obj":"Sentence"},{"id":"T123","span":{"begin":1097,"end":1244},"obj":"Sentence"},{"id":"T124","span":{"begin":1245,"end":1333},"obj":"Sentence"},{"id":"T125","span":{"begin":1334,"end":1468},"obj":"Sentence"},{"id":"T126","span":{"begin":1470,"end":1480},"obj":"Sentence"},{"id":"T127","span":{"begin":1481,"end":1754},"obj":"Sentence"},{"id":"T128","span":{"begin":1756,"end":1766},"obj":"Sentence"},{"id":"T129","span":{"begin":1767,"end":1951},"obj":"Sentence"},{"id":"T4","span":{"begin":0,"end":9},"obj":"Sentence"},{"id":"T5","span":{"begin":10,"end":259},"obj":"Sentence"},{"id":"T6","span":{"begin":261,"end":273},"obj":"Sentence"},{"id":"T7","span":{"begin":274,"end":385},"obj":"Sentence"},{"id":"T8","span":{"begin":386,"end":501},"obj":"Sentence"},{"id":"T9","span":{"begin":503,"end":510},"obj":"Sentence"},{"id":"T10","span":{"begin":511,"end":673},"obj":"Sentence"},{"id":"T11","span":{"begin":674,"end":830},"obj":"Sentence"},{"id":"T12","span":{"begin":831,"end":914},"obj":"Sentence"},{"id":"T13","span":{"begin":915,"end":1087},"obj":"Sentence"},{"id":"T14","span":{"begin":1089,"end":1096},"obj":"Sentence"},{"id":"T15","span":{"begin":1097,"end":1244},"obj":"Sentence"},{"id":"T16","span":{"begin":1245,"end":1333},"obj":"Sentence"},{"id":"T17","span":{"begin":1334,"end":1468},"obj":"Sentence"},{"id":"T18","span":{"begin":1470,"end":1480},"obj":"Sentence"},{"id":"T19","span":{"begin":1481,"end":1754},"obj":"Sentence"},{"id":"T20","span":{"begin":1756,"end":1766},"obj":"Sentence"},{"id":"T21","span":{"begin":1767,"end":1951},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"OBJECTIVE\nThe objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.\n\nINTRODUCTION\nThe production of TNF-α following LPS stimulation is one of the key steps in bacterial sepsis and inflammation. The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.\n\nMETHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I-κBα phosphorylation, nuclear p65 phosphorylation, and the DNA binding activity of NF-κB. In contrast, PTX markedly enhanced the phosphorylation and DNA binding activity of CREB. Cells concomitantly treated with PTX and LPS secreted similar levels of TNF-α in the presence and absence Protein kinase A inhibition.\n\nDISCUSSION\nThe increased level of cAMP that results from phosphodiesterase inhibition affects cytoplasmic and nuclear events, resulting in the attenuation of NF-κB and the activation of CREB transcriptional DNA binding through pathways that are partially Protein kinase A-independent.\n\nCONCLUSION\nPTX-mediated phosphodiesterase inhibition occurs partially through a Protein kinase A-independent pathway and may serve as a useful tool in the attenuation of LPS-induced inflammation. "}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T887","span":{"begin":59,"end":65},"obj":"Regulation"},{"id":"T888","span":{"begin":149,"end":176},"obj":"Protein"},{"id":"T889","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T890","span":{"begin":185,"end":195},"obj":"Gene_expression"},{"id":"T891","span":{"begin":278,"end":288},"obj":"Gene_expression"},{"id":"T892","span":{"begin":292,"end":297},"obj":"Protein"},{"id":"T893","span":{"begin":298,"end":307},"obj":"Positive_regulation"},{"id":"T894","span":{"begin":438,"end":444},"obj":"Regulation"},{"id":"T895","span":{"begin":445,"end":450},"obj":"Protein"},{"id":"T896","span":{"begin":451,"end":461},"obj":"Gene_expression"},{"id":"T897","span":{"begin":462,"end":480},"obj":"Positive_regulation"},{"id":"T898","span":{"begin":694,"end":708},"obj":"Phosphorylation"},{"id":"T899","span":{"begin":721,"end":726},"obj":"Protein"},{"id":"T900","span":{"begin":746,"end":749},"obj":"Protein"},{"id":"T901","span":{"begin":915,"end":920},"obj":"Protein"},{"id":"T902","span":{"begin":1135,"end":1141},"obj":"Negative_regulation"},{"id":"T903","span":{"begin":1135,"end":1141},"obj":"Negative_regulation"},{"id":"T904","span":{"begin":1154,"end":1159},"obj":"Protein"},{"id":"T905","span":{"begin":1160,"end":1175},"obj":"Phosphorylation"},{"id":"T906","span":{"begin":1185,"end":1188},"obj":"Protein"},{"id":"T907","span":{"begin":1189,"end":1204},"obj":"Phosphorylation"},{"id":"T908","span":{"begin":1379,"end":1387},"obj":"Localization"},{"id":"T909","span":{"begin":1406,"end":1411},"obj":"Protein"},{"id":"T910","span":{"begin":1419,"end":1427},"obj":"Regulation"},{"id":"T911","span":{"begin":1432,"end":1439},"obj":"Regulation"}],"relations":[{"id":"R650","pred":"themeOf","subj":"T888","obj":"T890"},{"id":"R651","pred":"themeOf","subj":"T890","obj":"T887"},{"id":"R652","pred":"themeOf","subj":"T891","obj":"T893"},{"id":"R653","pred":"themeOf","subj":"T892","obj":"T891"},{"id":"R654","pred":"themeOf","subj":"T894","obj":"T897"},{"id":"R655","pred":"themeOf","subj":"T895","obj":"T896"},{"id":"R656","pred":"themeOf","subj":"T896","obj":"T894"},{"id":"R657","pred":"themeOf","subj":"T899","obj":"T898"},{"id":"R658","pred":"themeOf","subj":"T904","obj":"T905"},{"id":"R659","pred":"themeOf","subj":"T905","obj":"T903"},{"id":"R660","pred":"themeOf","subj":"T906","obj":"T907"},{"id":"R661","pred":"themeOf","subj":"T907","obj":"T902"},{"id":"R662","pred":"themeOf","subj":"T908","obj":"T910"},{"id":"R663","pred":"themeOf","subj":"T908","obj":"T911"},{"id":"R664","pred":"themeOf","subj":"T909","obj":"T908"}],"attributes":[{"id":"M8","pred":"Speculation","subj":"T887","obj":"true"},{"id":"M9","pred":"Negation","subj":"T911","obj":"true"}],"text":"OBJECTIVE\nThe objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.\n\nINTRODUCTION\nThe production of TNF-α following LPS stimulation is one of the key steps in bacterial sepsis and inflammation. The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.\n\nMETHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I-κBα phosphorylation, nuclear p65 phosphorylation, and the DNA binding activity of NF-κB. In contrast, PTX markedly enhanced the phosphorylation and DNA binding activity of CREB. Cells concomitantly treated with PTX and LPS secreted similar levels of TNF-α in the presence and absence Protein kinase A inhibition.\n\nDISCUSSION\nThe increased level of cAMP that results from phosphodiesterase inhibition affects cytoplasmic and nuclear events, resulting in the attenuation of NF-κB and the activation of CREB transcriptional DNA binding through pathways that are partially Protein kinase A-independent.\n\nCONCLUSION\nPTX-mediated phosphodiesterase inhibition occurs partially through a Protein kinase A-independent pathway and may serve as a useful tool in the attenuation of LPS-induced inflammation. "}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T919","span":{"begin":149,"end":176},"obj":"Protein"},{"id":"T920","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T921","span":{"begin":185,"end":195},"obj":"Gene_expression"},{"id":"T922","span":{"begin":185,"end":195},"obj":"Gene_expression"},{"id":"T923","span":{"begin":134,"end":144},"obj":"Positive_regulation"},{"id":"T924","span":{"begin":134,"end":144},"obj":"Positive_regulation"},{"id":"T925","span":{"begin":59,"end":65},"obj":"Regulation"},{"id":"T926","span":{"begin":59,"end":65},"obj":"Regulation"},{"id":"T927","span":{"begin":292,"end":297},"obj":"Protein"},{"id":"T928","span":{"begin":278,"end":288},"obj":"Gene_expression"},{"id":"T929","span":{"begin":312,"end":323},"obj":"Positive_regulation"},{"id":"T930","span":{"begin":445,"end":450},"obj":"Protein"},{"id":"T931","span":{"begin":451,"end":461},"obj":"Gene_expression"},{"id":"T932","span":{"begin":438,"end":444},"obj":"Regulation"},{"id":"T933","span":{"begin":694,"end":726},"obj":"Protein"},{"id":"T934","span":{"begin":728,"end":745},"obj":"Protein"},{"id":"T935","span":{"begin":746,"end":749},"obj":"Protein"},{"id":"T936","span":{"begin":751,"end":756},"obj":"Protein"},{"id":"T937","span":{"begin":763,"end":808},"obj":"Protein"},{"id":"T938","span":{"begin":810,"end":814},"obj":"Protein"},{"id":"T939","span":{"begin":846,"end":851},"obj":"Protein"},{"id":"T940","span":{"begin":856,"end":860},"obj":"Protein"},{"id":"T941","span":{"begin":835,"end":842},"obj":"Binding"},{"id":"T942","span":{"begin":835,"end":842},"obj":"Binding"},{"id":"T943","span":{"begin":915,"end":920},"obj":"Protein"},{"id":"T944","span":{"begin":1011,"end":1027},"obj":"Protein"},{"id":"T945","span":{"begin":1028,"end":1038},"obj":"Negative_regulation"},{"id":"T946","span":{"begin":1097,"end":1100},"obj":"Protein"},{"id":"T947","span":{"begin":1142,"end":1155},"obj":"Protein"},{"id":"T948","span":{"begin":1156,"end":1159},"obj":"Protein"},{"id":"T949","span":{"begin":1185,"end":1188},"obj":"Protein"},{"id":"T950","span":{"begin":1238,"end":1243},"obj":"Protein"},{"id":"T951","span":{"begin":1160,"end":1175},"obj":"Phosphorylation"},{"id":"T952","span":{"begin":1160,"end":1175},"obj":"Phosphorylation"},{"id":"T953","span":{"begin":1177,"end":1184},"obj":"Entity"},{"id":"T954","span":{"begin":1189,"end":1204},"obj":"Phosphorylation"},{"id":"T955","span":{"begin":1218,"end":1225},"obj":"Binding"},{"id":"T956","span":{"begin":1135,"end":1141},"obj":"Negative_regulation"},{"id":"T957","span":{"begin":1258,"end":1261},"obj":"Protein"},{"id":"T958","span":{"begin":1328,"end":1332},"obj":"Protein"},{"id":"T959","span":{"begin":1284,"end":1299},"obj":"Phosphorylation"},{"id":"T960","span":{"begin":1271,"end":1279},"obj":"Positive_regulation"},{"id":"T961","span":{"begin":1367,"end":1370},"obj":"Protein"},{"id":"T962","span":{"begin":1406,"end":1411},"obj":"Protein"},{"id":"T963","span":{"begin":1440,"end":1456},"obj":"Protein"},{"id":"T964","span":{"begin":1379,"end":1387},"obj":"Localization"},{"id":"T965","span":{"begin":1379,"end":1387},"obj":"Localization"},{"id":"T966","span":{"begin":1457,"end":1467},"obj":"Negative_regulation"},{"id":"T967","span":{"begin":1628,"end":1633},"obj":"Protein"},{"id":"T968","span":{"begin":1656,"end":1660},"obj":"Protein"},{"id":"T969","span":{"begin":1681,"end":1688},"obj":"Binding"},{"id":"T970","span":{"begin":1642,"end":1652},"obj":"Positive_regulation"},{"id":"T971","span":{"begin":1767,"end":1770},"obj":"Protein"},{"id":"T972","span":{"begin":1836,"end":1852},"obj":"Protein"}],"relations":[{"id":"R669","pred":"themeOf","subj":"T919","obj":"T921"},{"id":"R670","pred":"themeOf","subj":"T920","obj":"T922"},{"id":"R671","pred":"themeOf","subj":"T921","obj":"T923"},{"id":"R672","pred":"themeOf","subj":"T922","obj":"T924"},{"id":"R673","pred":"themeOf","subj":"T923","obj":"T925"},{"id":"R674","pred":"themeOf","subj":"T924","obj":"T926"},{"id":"R675","pred":"themeOf","subj":"T927","obj":"T928"},{"id":"R676","pred":"themeOf","subj":"T928","obj":"T929"},{"id":"R677","pred":"themeOf","subj":"T930","obj":"T931"},{"id":"R678","pred":"themeOf","subj":"T931","obj":"T932"},{"id":"R679","pred":"themeOf","subj":"T939","obj":"T941"},{"id":"R680","pred":"themeOf","subj":"T940","obj":"T942"},{"id":"R681","pred":"themeOf","subj":"T944","obj":"T945"},{"id":"R682","pred":"causeOf","subj":"T946","obj":"T956"},{"id":"R683","pred":"themeOf","subj":"T947","obj":"T951"},{"id":"R684","pred":"themeOf","subj":"T948","obj":"T952"},{"id":"R685","pred":"themeOf","subj":"T949","obj":"T954"},{"id":"R686","pred":"themeOf","subj":"T950","obj":"T955"},{"id":"R687","pred":"Site","subj":"T953","obj":"T954"},{"id":"R688","pred":"themeOf","subj":"T954","obj":"T956"},{"id":"R689","pred":"causeOf","subj":"T957","obj":"T960"},{"id":"R690","pred":"themeOf","subj":"T958","obj":"T959"},{"id":"R691","pred":"themeOf","subj":"T959","obj":"T960"},{"id":"R692","pred":"themeOf","subj":"T961","obj":"T964"},{"id":"R69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objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.\n\nINTRODUCTION\nThe production of TNF-α following LPS stimulation is one of the key steps in bacterial sepsis and inflammation. The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.\n\nMETHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I-κBα phosphorylation, nuclear p65 phosphorylation, and the DNA binding activity of NF-κB. In contrast, PTX markedly enhanced the phosphorylation and DNA binding activity of CREB. Cells concomitantly treated with PTX and LPS secreted similar levels of TNF-α in the presence and absence Protein kinase A inhibition.\n\nDISCUSSION\nThe increased level of cAMP that results from phosphodiesterase inhibition affects cytoplasmic and nuclear events, resulting in the attenuation of NF-κB and the activation of CREB transcriptional DNA binding through pathways that are partially Protein kinase A-independent.\n\nCONCLUSION\nPTX-mediated phosphodiesterase inhibition occurs partially through a Protein kinase A-independent pathway and may serve as a useful tool in the attenuation of LPS-induced inflammation. "}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T759","span":{"begin":149,"end":170},"obj":"P01375"},{"id":"T760","span":{"begin":178,"end":181},"obj":"P01375"},{"id":"T761","span":{"begin":178,"end":183},"obj":"P01375"},{"id":"T762","span":{"begin":292,"end":295},"obj":"P01375"},{"id":"T763","span":{"begin":292,"end":297},"obj":"P01375"},{"id":"T764","span":{"begin":445,"end":448},"obj":"P01375"},{"id":"T765","span":{"begin":445,"end":450},"obj":"P01375"},{"id":"T766","span":{"begin":746,"end":749},"obj":"P21579"},{"id":"T767","span":{"begin":746,"end":749},"obj":"Q04206"},{"id":"T768","span":{"begin":771,"end":808},"obj":"O43889"},{"id":"T769","span":{"begin":771,"end":808},"obj":"P15336"},{"id":"T770","span":{"begin":771,"end":808},"obj":"P18848"},{"id":"T771","span":{"begin":771,"end":808},"obj":"Q8TEY5"},{"id":"T772","span":{"begin":771,"end":808},"obj":"Q02930"},{"id":"T773","span":{"begin":771,"end":808},"obj":"P16220"},{"id":"T774","span":{"begin":810,"end":814},"obj":"P16220"},{"id":"T775","span":{"begin":810,"end":814},"obj":"O43889"},{"id":"T776","span":{"begin":810,"end":814},"obj":"Q8TEY5"},{"id":"T777","span":{"begin":810,"end":814},"obj":"Q02930"},{"id":"T778","span":{"begin":810,"end":814},"obj":"P18848"},{"id":"T779","span":{"begin":810,"end":814},"obj":"P15336"},{"id":"T780","span":{"begin":856,"end":860},"obj":"O43889"},{"id":"T781","span":{"begin":856,"end":860},"obj":"Q02930"},{"id":"T782","span":{"begin":856,"end":860},"obj":"P15336"},{"id":"T783","span":{"begin":856,"end":860},"obj":"P16220"},{"id":"T784","span":{"begin":856,"end":860},"obj":"Q8TEY5"},{"id":"T785","span":{"begin":856,"end":860},"obj":"P18848"},{"id":"T786","span":{"begin":915,"end":918},"obj":"P01375"},{"id":"T787","span":{"begin":915,"end":920},"obj":"P01375"},{"id":"T788","span":{"begin":1185,"end":1188},"obj":"Q04206"},{"id":"T789","span":{"begin":1185,"end":1188},"obj":"P21579"},{"id":"T790","span":{"begin":1328,"end":1332},"obj":"O43889"},{"id":"T791","span":{"begin":1328,"end":1332},"obj":"Q8TEY5"},{"id":"T792","span":{"begin":1328,"end":1332},"obj":"Q02930"},{"id":"T793","span":{"begin":1328,"end":1332},"obj":"P18848"},{"id":"T794","span":{"begin":1328,"end":1332},"obj":"P16220"},{"id":"T795","span":{"begin":1328,"end":1332},"obj":"P15336"},{"id":"T796","span":{"begin":1406,"end":1409},"obj":"P01375"},{"id":"T797","span":{"begin":1406,"end":1411},"obj":"P01375"},{"id":"T798","span":{"begin":1656,"end":1660},"obj":"P16220"},{"id":"T799","span":{"begin":1656,"end":1660},"obj":"P18848"},{"id":"T800","span":{"begin":1656,"end":1660},"obj":"Q02930"},{"id":"T801","span":{"begin":1656,"end":1660},"obj":"P15336"},{"id":"T802","span":{"begin":1656,"end":1660},"obj":"Q8TEY5"},{"id":"T803","span":{"begin":1656,"end":1660},"obj":"O43889"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"OBJECTIVE\nThe objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.\n\nINTRODUCTION\nThe production of TNF-α following LPS stimulation is one of the key steps in bacterial sepsis and inflammation. The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.\n\nMETHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I-κBα phosphorylation, nuclear p65 phosphorylation, and the DNA binding activity of NF-κB. In contrast, PTX markedly enhanced the phosphorylation and DNA binding activity of CREB. Cells concomitantly treated with PTX and LPS secreted similar levels of TNF-α in the presence and absence Protein kinase A inhibition.\n\nDISCUSSION\nThe increased level of cAMP that results from phosphodiesterase inhibition affects cytoplasmic and nuclear events, resulting in the attenuation of NF-κB and the activation of CREB transcriptional DNA binding through pathways that are partially Protein kinase A-independent.\n\nCONCLUSION\nPTX-mediated phosphodiesterase inhibition occurs partially through a Protein kinase A-independent pathway and may serve as a useful tool in the attenuation of LPS-induced inflammation. "}

    test2

    {"project":"test2","denotations":[{"id":"T32","span":{"begin":149,"end":176},"obj":"Protein"},{"id":"T33","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T34","span":{"begin":185,"end":195},"obj":"Gene_expression"},{"id":"T35","span":{"begin":278,"end":288},"obj":"Gene_expression"},{"id":"T36","span":{"begin":292,"end":297},"obj":"Protein"},{"id":"T37","span":{"begin":298,"end":307},"obj":"Positive_regulation"},{"id":"T38","span":{"begin":438,"end":444},"obj":"Regulation"},{"id":"T39","span":{"begin":445,"end":450},"obj":"Protein"},{"id":"T40","span":{"begin":451,"end":461},"obj":"Gene_expression"},{"id":"T41","span":{"begin":694,"end":708},"obj":"Phosphorylation"},{"id":"T42","span":{"begin":721,"end":726},"obj":"Protein"},{"id":"T43","span":{"begin":746,"end":749},"obj":"Protein"},{"id":"T44","span":{"begin":915,"end":920},"obj":"Protein"},{"id":"T45","span":{"begin":1135,"end":1141},"obj":"Negative_regulation"},{"id":"T46","span":{"begin":1154,"end":1159},"obj":"Protein"},{"id":"T47","span":{"begin":1160,"end":1175},"obj":"Phosphorylation"},{"id":"T48","span":{"begin":1185,"end":1188},"obj":"Protein"},{"id":"T49","span":{"begin":1189,"end":1204},"obj":"Phosphorylation"},{"id":"T50","span":{"begin":1218,"end":1225},"obj":"Binding"},{"id":"T51","span":{"begin":1271,"end":1279},"obj":"Positive_regulation"},{"id":"T52","span":{"begin":1379,"end":1387},"obj":"Gene_expression"},{"id":"T53","span":{"begin":1406,"end":1411},"obj":"Protein"}],"relations":[{"id":"R20","pred":"themeOf","subj":"T32","obj":"T34"},{"id":"R21","pred":"themeOf","subj":"T35","obj":"T37"},{"id":"R22","pred":"themeOf","subj":"T36","obj":"T35"},{"id":"R23","pred":"themeOf","subj":"T39","obj":"T40"},{"id":"R24","pred":"themeOf","subj":"T40","obj":"T38"},{"id":"R25","pred":"themeOf","subj":"T42","obj":"T41"},{"id":"R26","pred":"themeOf","subj":"T46","obj":"T47"},{"id":"R27","pred":"themeOf","subj":"T47","obj":"T45"},{"id":"R28","pred":"themeOf","subj":"T48","obj":"T49"},{"id":"R29","pred":"themeOf","subj":"T48","obj":"T50"},{"id":"R30","pred":"themeOf","subj":"T49","obj":"T45"},{"id":"R31","pred":"themeOf","subj":"T50","obj":"T45"},{"id":"R32","pred":"themeOf","subj":"T53","obj":"T52"}],"attributes":[{"id":"M4","pred":"Negation","subj":"T45","obj":"true"}],"text":"OBJECTIVE\nThe objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.\n\nINTRODUCTION\nThe production of TNF-α following LPS stimulation is one of the key steps in bacterial sepsis and inflammation. The mechanism by which phosphodiesterase inhibition alters TNF-α production in the presence of LPS remains unclear.\n\nMETHODS\nHuman mononuclear cells were stimulated with LPS (1 μg/mL), in the presence and absence of Pentoxifylline (PTX; 20 mM), a nonspecific phosphodiesterase inhibitor. Western blotting of phosphorylated cytoplasmic I-κBα, nuclear factor-κB p65 (NF-κB), and nuclear cAMP-response element binding protein (CREB) was performed. DNA binding of NF-κB and CREB was verified by electrophoretic mobility shift assay. TNF-α levels were determined in the supernatant of stimulated cells in the presence and absence Protein kinase A inhibition by an enzyme-linked immunosorbent assay (ELISA).\n\nRESULTS\nPTX was demonstrated to significantly reduce cytoplasmic I-κBα phosphorylation, nuclear p65 phosphorylation, and the DNA binding activity of NF-κB. In contrast, PTX markedly enhanced the phosphorylation and DNA binding activity of CREB. Cells concomitantly treated with PTX and LPS secreted similar levels of TNF-α in the presence and absence Protein kinase A inhibition.\n\nDISCUSSION\nThe increased level of cAMP that results from phosphodiesterase inhibition affects cytoplasmic and nuclear events, resulting in the attenuation of NF-κB and the activation of CREB transcriptional DNA binding through pathways that are partially Protein kinase A-independent.\n\nCONCLUSION\nPTX-mediated phosphodiesterase inhibition occurs partially through a Protein kinase A-independent pathway and may serve as a useful tool in the attenuation of LPS-induced inflammation. "}