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PMC:1942070 / 8417-8805 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4099 0-2 IN denotes As
T4100 3-8 VB denotes shown
T4101 9-11 IN denotes in
T4102 12-16 NNP denotes Fig.
T4103 17-19 NN denotes 2B
T4104 19-20 -COMMA- denotes ,
T4105 21-25 NN denotes loss
T4106 26-28 IN denotes of
T4107 29-35 NN denotes PKD1/3
T4108 36-46 NN denotes expression
T4109 47-50 VB denotes had
T4110 51-53 DT denotes no
T4111 54-65 JJ denotes significant
T4112 66-72 NN denotes impact
T4113 73-75 IN denotes on
T4114 76-79 DT denotes the
T4115 80-88 NN denotes survival
T4116 89-91 IN denotes of
T4117 92-96 NN denotes DT40
T4118 97-98 NN denotes B
T4119 99-104 NN denotes cells
T4120 105-107 IN denotes in
T4121 108-116 NN denotes response
T4122 117-119 TO denotes to
T4123 120-133 JJ denotes mitochondrial
T4124 134-140 NN denotes stress
T4125 141-148 NN denotes stimuli
T4126 149-150 -LRB- denotes (
T4127 150-154 NN denotes H2O2
T4128 155-157 CC denotes or
T4129 158-163 NN denotes serum
T4130 164-175 NN denotes deprivation
T4131 175-176 -RRB- denotes )
T4132 176-177 -COLON- denotes ;
T4133 178-181 NN denotes DNA
T4134 182-190 NN denotes damaging
T4135 191-197 NN denotes agents
T4136 198-199 -LRB- denotes (
T4137 199-208 NN denotes etoposide
T4138 209-211 CC denotes or
T4139 212-223 NN denotes doxorubicin
T4140 223-224 -RRB- denotes )
T4141 224-225 -COLON- denotes ;
T4142 226-228 NN denotes ER
T4143 229-236 NN denotes pathway
T4144 237-243 NN denotes stress
T4145 244-247 IN denotes due
T4146 248-250 TO denotes to
T4147 251-258 NN denotes calcium
T4148 259-267 NN denotes overload
T4149 268-269 -LRB- denotes (
T4150 269-281 NN denotes thapsigargin
T4151 281-282 -RRB- denotes )
T4152 283-285 CC denotes or
T4153 286-295 VB denotes following
T4154 296-305 VB denotes prolonged
T4155 306-315 NN denotes treatment
T4156 316-320 IN denotes with
T4157 321-328 NN denotes phorbol
T4158 329-335 NN denotes esters
T4159 336-338 CC denotes or
T4160 339-351 NN denotes Trichostatin
T4161 352-353 NN denotes A
T4162 353-354 -COMMA- denotes ,
T4163 355-357 DT denotes an
T4164 358-367 NN denotes inhibitor
T4165 368-370 IN denotes of
T4166 371-376 NN denotes class
T4167 377-381 NN denotes I/II
T4168 382-387 NN denotes HDACs
R3322 T4100 T4099 arg2Of shown,As
R3323 T4100 T4101 arg1Of shown,in
R3324 T4103 T4101 arg2Of 2B,in
R3325 T4103 T4102 arg1Of 2B,Fig.
R3326 T4105 T4106 arg1Of loss,of
R3327 T4105 T4109 arg1Of loss,had
R3328 T4108 T4106 arg2Of expression,of
R3329 T4108 T4107 arg1Of expression,PKD1/3
R3330 T4109 T4099 arg1Of had,As
R3331 T4109 T4104 arg1Of had,","
R3332 T4109 T4113 arg1Of had,on
R3333 T4109 T4120 arg1Of had,in
R3334 T4109 T4153 arg1Of had,following
R3335 T4112 T4109 arg2Of impact,had
R3336 T4112 T4110 arg1Of impact,no
R3337 T4112 T4111 arg1Of impact,significant
R3338 T4115 T4113 arg2Of survival,on
R3339 T4115 T4114 arg1Of survival,the
R3340 T4115 T4116 arg1Of survival,of
R3341 T4119 T4116 arg2Of cells,of
R3342 T4119 T4117 arg1Of cells,DT40
R3343 T4119 T4118 arg1Of cells,B
R3344 T4120 T4122 arg1Of in,to
R3345 T4120 T4152 arg1Of in,or
R3346 T4121 T4120 arg2Of response,in
R3347 T4125 T4123 arg1Of stimuli,mitochondrial
R3348 T4125 T4124 arg1Of stimuli,stress
R3349 T4125 T4126 arg1Of stimuli,(
R3350 T4125 T4132 arg1Of stimuli,;
R3351 T4127 T4128 arg1Of H2O2,or
R3352 T4128 T4126 arg2Of or,(
R3353 T4130 T4128 arg2Of deprivation,or
R3354 T4130 T4129 arg1Of deprivation,serum
R3355 T4131 T4126 arg3Of ),(
R3356 T4132 T4141 arg1Of ;,;
R3357 T4135 T4132 arg2Of agents,;
R3358 T4135 T4133 arg1Of agents,DNA
R3359 T4135 T4134 arg1Of agents,damaging
R3360 T4135 T4136 arg1Of agents,(
R3361 T4137 T4138 arg1Of etoposide,or
R3362 T4138 T4136 arg2Of or,(
R3363 T4139 T4138 arg2Of doxorubicin,or
R3364 T4140 T4136 arg3Of ),(
R3365 T4141 T4120 arg3Of ;,in
R3366 T4144 T4141 arg2Of stress,;
R3367 T4144 T4142 arg1Of stress,ER
R3368 T4144 T4143 arg1Of stress,pathway
R3369 T4144 T4145 arg1Of stress,due
R3370 T4145 T4146 arg1Of due,to
R3371 T4148 T4145 arg2Of overload,due
R3372 T4148 T4147 arg1Of overload,calcium
R3373 T4148 T4149 arg1Of overload,(
R3374 T4150 T4149 arg2Of thapsigargin,(
R3375 T4151 T4149 arg3Of ),(
R3376 T4153 T4152 arg2Of following,or
R3377 T4155 T4153 arg2Of treatment,following
R3378 T4155 T4154 arg2Of treatment,prolonged
R3379 T4155 T4156 arg1Of treatment,with
R3380 T4158 T4157 arg1Of esters,phorbol
R3381 T4158 T4159 arg1Of esters,or
R3382 T4159 T4156 arg2Of or,with
R3383 T4159 T4162 arg1Of or,","
R3384 T4161 T4159 arg2Of A,or
R3385 T4161 T4160 arg1Of A,Trichostatin
R3386 T4164 T4162 arg2Of inhibitor,","
R3387 T4164 T4163 arg1Of inhibitor,an
R3388 T4164 T4165 arg1Of inhibitor,of
R3389 T4168 T4165 arg2Of HDACs,of
R3390 T4168 T4166 arg1Of HDACs,class
R3391 T4168 T4167 arg1Of HDACs,I/II

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4516 0-2 IN denotes As
T4517 3-8 VBN denotes shown
T4518 9-11 IN denotes in
T4519 12-16 NNP denotes Fig.
T4520 17-19 NNP denotes 2B
T4521 19-20 , denotes ,
T4522 21-25 NN denotes loss
T4523 26-28 IN denotes of
T4524 29-35 CD denotes PKD1/3
T4525 36-46 NN denotes expression
T4526 47-50 VBD denotes had
T4527 51-53 DT denotes no
T4528 54-65 JJ denotes significant
T4529 66-72 NN denotes impact
T4530 73-75 IN denotes on
T4531 76-79 DT denotes the
T4532 80-88 NN denotes survival
T4533 89-91 IN denotes of
T4534 92-96 NNP denotes DT40
T4535 97-98 NNP denotes B
T4536 99-104 NNS denotes cells
T4537 105-107 IN denotes in
T4538 108-116 NN denotes response
T4539 117-119 TO denotes to
T4540 120-133 JJ denotes mitochondrial
T4541 134-140 NN denotes stress
T4542 141-148 NNS denotes stimuli
T4543 149-150 -LRB- denotes (
T4544 150-154 CD denotes H2O2
T4545 155-157 CC denotes or
T4546 158-163 NN denotes serum
T4547 164-175 NN denotes deprivation
T4548 175-176 -RRB- denotes )
T4549 176-177 : denotes ;
T4550 178-181 NNP denotes DNA
T4551 182-190 VBG denotes damaging
T4552 191-197 NNS denotes agents
T4553 198-199 -LRB- denotes (
T4554 199-208 NN denotes etoposide
T4555 209-211 CC denotes or
T4556 212-223 NN denotes doxorubicin
T4557 223-224 -RRB- denotes )
T4558 224-225 : denotes ;
T4559 226-228 NNP denotes ER
T4560 229-236 NN denotes pathway
T4561 237-243 NN denotes stress
T4562 244-247 JJ denotes due
T4563 248-250 TO denotes to
T4564 251-258 NN denotes calcium
T4565 259-267 NN denotes overload
T4566 268-269 -LRB- denotes (
T4567 269-281 NN denotes thapsigargin
T4568 281-282 -RRB- denotes )
T4569 283-285 CC denotes or
T4570 286-295 VBG denotes following
T4571 296-305 JJ denotes prolonged
T4572 306-315 NN denotes treatment
T4573 316-320 IN denotes with
T4574 321-328 NN denotes phorbol
T4575 329-335 NNS denotes esters
T4576 336-338 CC denotes or
T4577 339-351 NNP denotes Trichostatin
T4578 352-353 NNP denotes A
T4579 353-354 , denotes ,
T4580 355-357 DT denotes an
T4581 358-367 NN denotes inhibitor
T4582 368-370 IN denotes of
T4583 371-376 NN denotes class
T4584 377-381 NNP denotes I/II
T4585 382-387 NNP denotes HDACs
T4586 387-388 . denotes .
R3715 T4516 T4517 mark As,shown
R3716 T4517 T4526 advcl shown,had
R3717 T4518 T4517 prep in,shown
R3718 T4519 T4520 compound Fig.,2B
R3719 T4520 T4518 pobj 2B,in
R3720 T4521 T4520 punct ",",2B
R3721 T4522 T4520 appos loss,2B
R3722 T4523 T4522 prep of,loss
R3723 T4524 T4525 nummod PKD1/3,expression
R3724 T4525 T4523 pobj expression,of
R3725 T4526 T4526 ROOT had,had
R3726 T4527 T4529 det no,impact
R3727 T4528 T4529 amod significant,impact
R3728 T4529 T4526 dobj impact,had
R3729 T4530 T4529 prep on,impact
R3730 T4531 T4532 det the,survival
R3731 T4532 T4530 pobj survival,on
R3732 T4533 T4532 prep of,survival
R3733 T4534 T4535 compound DT40,B
R3734 T4535 T4536 compound B,cells
R3735 T4536 T4533 pobj cells,of
R3736 T4537 T4526 prep in,had
R3737 T4538 T4537 pobj response,in
R3738 T4539 T4538 prep to,response
R3739 T4540 T4542 amod mitochondrial,stimuli
R3740 T4541 T4542 compound stress,stimuli
R3741 T4542 T4539 pobj stimuli,to
R3742 T4543 T4542 punct (,stimuli
R3743 T4544 T4542 appos H2O2,stimuli
R3744 T4545 T4544 cc or,H2O2
R3745 T4546 T4547 compound serum,deprivation
R3746 T4547 T4544 conj deprivation,H2O2
R3747 T4548 T4542 punct ),stimuli
R3748 T4549 T4542 punct ;,stimuli
R3749 T4550 T4552 amod DNA,agents
R3750 T4551 T4552 amod damaging,agents
R3751 T4552 T4542 conj agents,stimuli
R3752 T4553 T4552 punct (,agents
R3753 T4554 T4552 appos etoposide,agents
R3754 T4555 T4554 cc or,etoposide
R3755 T4556 T4554 conj doxorubicin,etoposide
R3756 T4557 T4552 punct ),agents
R3757 T4558 T4526 punct ;,had
R3758 T4559 T4561 compound ER,stress
R3759 T4560 T4561 compound pathway,stress
R3760 T4561 T4570 nsubj stress,following
R3761 T4562 T4561 amod due,stress
R3762 T4563 T4562 pcomp to,due
R3763 T4564 T4565 compound calcium,overload
R3764 T4565 T4562 pobj overload,due
R3765 T4566 T4567 punct (,thapsigargin
R3766 T4567 T4565 appos thapsigargin,overload
R3767 T4568 T4567 punct ),thapsigargin
R3768 T4569 T4565 cc or,overload
R3769 T4570 T4526 advcl following,had
R3770 T4571 T4572 amod prolonged,treatment
R3771 T4572 T4570 dobj treatment,following
R3772 T4573 T4572 prep with,treatment
R3773 T4574 T4575 compound phorbol,esters
R3774 T4575 T4573 pobj esters,with
R3775 T4576 T4575 cc or,esters
R3776 T4577 T4578 compound Trichostatin,A
R3777 T4578 T4575 conj A,esters
R3778 T4579 T4578 punct ",",A
R3779 T4580 T4581 det an,inhibitor
R3780 T4581 T4578 appos inhibitor,A
R3781 T4582 T4581 prep of,inhibitor
R3782 T4583 T4585 compound class,HDACs
R3783 T4584 T4585 compound I/II,HDACs
R3784 T4585 T4582 pobj HDACs,of
R3785 T4586 T4526 punct .,had

UBERON-AE

Id Subject Object Predicate Lexical cue
T3782 158-163 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-BP

Id Subject Object Predicate Lexical cue
T3835 108-140 http://purl.obolibrary.org/obo/GO_1990046 denotes response to mitochondrial stress

GO-CC

Id Subject Object Predicate Lexical cue
T4623 99-104 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T4625 226-228 http://purl.obolibrary.org/obo/GO_0005783 denotes ER

sentences

Id Subject Object Predicate Lexical cue
T3818 0-388 Sentence denotes As shown in Fig. 2B, loss of PKD1/3 expression had no significant impact on the survival of DT40 B cells in response to mitochondrial stress stimuli (H2O2 or serum deprivation); DNA damaging agents (etoposide or doxorubicin); ER pathway stress due to calcium overload (thapsigargin) or following prolonged treatment with phorbol esters or Trichostatin A, an inhibitor of class I/II HDACs.
T60 0-388 Sentence denotes As shown in Fig. 2B, loss of PKD1/3 expression had no significant impact on the survival of DT40 B cells in response to mitochondrial stress stimuli (H2O2 or serum deprivation); DNA damaging agents (etoposide or doxorubicin); ER pathway stress due to calcium overload (thapsigargin) or following prolonged treatment with phorbol esters or Trichostatin A, an inhibitor of class I/II HDACs.

events-check-again

Id Subject Object Predicate Lexical cue
T4770 21-25 Negative_regulation denotes loss
T4771 21-25 Negative_regulation denotes loss
T4772 29-33 Protein denotes PKD1
T4773 34-35 Protein denotes 3
T4774 36-46 Gene_expression denotes expression
T4775 36-46 Gene_expression denotes expression
R3845 T4772 T4774 themeOf PKD1,expression
R3846 T4773 T4775 themeOf 3,expression
R3847 T4774 T4771 themeOf expression,loss
R3848 T4775 T4770 themeOf expression,loss

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4806 12-15 Protein denotes Fig
T4807 29-33 Protein denotes PKD1
T4808 34-35 Protein denotes 3
T4809 92-98 Protein denotes DT40 B
T4810 377-387 Protein denotes I/II HDACs
T4811 36-46 Gene_expression denotes expression
T4812 36-46 Gene_expression denotes expression
T4813 358-367 Negative_regulation denotes inhibitor
T4814 21-25 Negative_regulation denotes loss
T4815 21-25 Negative_regulation denotes loss
R3856 T4807 T4811 themeOf PKD1,expression
R3857 T4808 T4812 themeOf 3,expression
R3858 T4810 T4813 themeOf I/II HDACs,inhibitor
R3859 T4811 T4814 themeOf expression,loss
R3860 T4812 T4815 themeOf expression,loss

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T3802 21-25 Negative_regulation denotes loss
T3803 21-25 Negative_regulation denotes loss
T3804 29-33 Protein denotes PKD1
T3805 34-35 Protein denotes 3
T3806 36-46 Gene_expression denotes expression
T3807 36-46 Gene_expression denotes expression
R3052 T3804 T3806 themeOf PKD1,expression
R3053 T3805 T3807 themeOf 3,expression
R3054 T3806 T3803 themeOf expression,loss
R3055 T3807 T3802 themeOf expression,loss

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4203 29-33 P98161 denotes PKD1
T4204 226-228 P03372 denotes ER

test2

Id Subject Object Predicate Lexical cue
T3777 21-25 Negative_regulation denotes loss
T3778 29-33 Protein denotes PKD1
T3779 34-35 Protein denotes 3
T3780 36-46 Gene_expression denotes expression
T3781 358-367 Negative_regulation denotes inhibitor
R3047 T3778 T3780 themeOf PKD1,expression
R3048 T3779 T3780 themeOf 3,expression
R3049 T3780 T3777 themeOf expression,loss