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PMC:1914394 / 13961-14617 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T7436 0-4 NN denotes Loss
T7437 25-32 VBZ denotes results
T7438 5-7 IN denotes of
T7439 8-10 NN denotes Rb
T7440 11-13 IN denotes in
T7441 14-17 DT denotes the
T7442 18-24 NN denotes retina
T7443 33-35 IN denotes in
T7444 36-48 JJ denotes considerable
T7445 53-62 NN denotes apoptosis
T7446 49-52 NN denotes RTC
T7447 62-64 , denotes ,
T7448 64-75 VBG denotes eliminating
T7449 76-80 JJS denotes most
T7450 102-107 NNS denotes cells
T7451 81-88 JJ denotes bipolar
T7452 89-92 CC denotes and
T7453 93-101 NN denotes ganglion
T7454 108-110 RB denotes as
T7455 116-118 IN denotes as
T7456 111-115 RB denotes well
T7457 119-123 JJ denotes many
T7458 124-128 NNS denotes rods
T7459 129-130 -LRB- denotes (
T7460 137-139 NN denotes 2A
T7461 130-136 NN denotes Figure
T7462 139-140 SYM denotes –
T7463 140-142 NN denotes 2D
T7464 142-143 -RRB- denotes )
T7465 144-145 -LRB- denotes [
T7466 147-148 CD denotes 3
T7467 145-146 CD denotes 2
T7468 146-147 , denotes ,
T7469 148-149 -RRB- denotes ]
T7470 149-150 . denotes .
T7471 150-406 sentence denotes The loss of Rb KO rods is evident from the thinner ONL, and the death of these cells as well as bipolar and ganglion neurons can be detected directly by double labelling for apoptotic and cell-type-specific markers [2] (M. P. and R. B., unpublished data).
T7472 151-154 DT denotes The
T7473 155-159 NN denotes loss
T7474 174-176 VBZ denotes is
T7475 160-162 IN denotes of
T7476 163-165 NN denotes Rb
T7477 166-168 NN denotes KO
T7478 169-173 NNS denotes rods
T7479 177-184 JJ denotes evident
T7480 185-189 IN denotes from
T7481 190-193 DT denotes the
T7482 202-205 NN denotes ONL
T7483 194-201 JJ denotes thinner
T7484 205-207 , denotes ,
T7485 207-210 CC denotes and
T7486 211-214 DT denotes the
T7487 215-220 NN denotes death
T7488 283-291 VBN denotes detected
T7489 221-223 IN denotes of
T7490 224-229 DT denotes these
T7491 230-235 NNS denotes cells
T7492 236-238 RB denotes as
T7493 244-246 IN denotes as
T7494 239-243 RB denotes well
T7495 247-254 JJ denotes bipolar
T7496 268-275 NNS denotes neurons
T7497 255-258 CC denotes and
T7498 259-267 NN denotes ganglion
T7499 276-279 MD denotes can
T7500 280-282 VB denotes be
T7501 292-300 RB denotes directly
T7502 301-303 IN denotes by
T7503 304-310 RB denotes double
T7504 311-320 VBG denotes labelling
T7505 321-324 IN denotes for
T7506 325-334 JJ denotes apoptotic
T7507 358-365 NNS denotes markers
T7508 335-338 CC denotes and
T7509 339-343 NN denotes cell
T7510 344-348 NN denotes type
T7511 343-344 HYPH denotes -
T7512 349-357 JJ denotes specific
T7513 348-349 HYPH denotes -
T7514 366-367 -LRB- denotes [
T7515 367-368 CD denotes 2
T7516 368-369 -RRB- denotes ]
T7517 370-371 -LRB- denotes (
T7518 371-373 NNP denotes M.
T7519 374-376 NNP denotes P.
T7520 377-380 CC denotes and
T7521 381-383 NNP denotes R.
T7522 384-386 NNP denotes B.
T7523 386-388 , denotes ,
T7524 388-399 JJ denotes unpublished
T7525 400-404 NNS denotes data
T7526 404-405 -RRB- denotes )
T7527 405-406 . denotes .
T7528 406-532 sentence denotes Loss of peripheral Rb KO ganglion cells is also evident from thinning of the optic nerve (D. C. and R. B., unpublished data).
T7529 407-411 NN denotes Loss
T7530 447-449 VBZ denotes is
T7531 412-414 IN denotes of
T7532 415-425 JJ denotes peripheral
T7533 441-446 NNS denotes cells
T7534 426-428 NN denotes Rb
T7535 429-431 NN denotes KO
T7536 432-440 NN denotes ganglion
T7537 450-454 RB denotes also
T7538 455-462 JJ denotes evident
T7539 463-467 IN denotes from
T7540 468-476 VBG denotes thinning
T7541 477-479 IN denotes of
T7542 480-483 DT denotes the
T7543 490-495 NN denotes nerve
T7544 484-489 JJ denotes optic
T7545 496-497 -LRB- denotes (
T7546 497-499 NNP denotes D.
T7547 500-502 NNP denotes C.
T7548 503-506 CC denotes and
T7549 507-509 NNP denotes R.
T7550 510-512 NNP denotes B.
T7551 512-514 , denotes ,
T7552 514-525 JJ denotes unpublished
T7553 526-530 NNS denotes data
T7554 530-531 -RRB- denotes )
T7555 531-532 . denotes .
T7556 532-656 sentence denotes Deleting E2f1, but not E2f2 or E2f3, blocked this ectopic cell death in a dose-dependent fashion (Figures 1D, 1G, and S1B).
T7557 533-541 VBG denotes Deleting
T7558 570-577 VBD denotes blocked
T7559 542-546 NN denotes E2f1
T7560 546-548 , denotes ,
T7561 548-551 CC denotes but
T7562 552-555 RB denotes not
T7563 556-560 NN denotes E2f2
T7564 561-563 CC denotes or
T7565 564-568 NN denotes E2f3
T7566 568-570 , denotes ,
T7567 578-582 DT denotes this
T7568 596-601 NN denotes death
T7569 583-590 JJ denotes ectopic
T7570 591-595 NN denotes cell
T7571 602-604 IN denotes in
T7572 605-606 DT denotes a
T7573 622-629 NN denotes fashion
T7574 607-611 NN denotes dose
T7575 612-621 JJ denotes dependent
T7576 611-612 HYPH denotes -
T7577 630-631 -LRB- denotes (
T7578 639-641 NN denotes 1D
T7579 631-638 NNS denotes Figures
T7580 641-643 , denotes ,
T7581 643-645 NN denotes 1G
T7582 645-647 , denotes ,
T7583 647-650 CC denotes and
T7584 651-654 NN denotes S1B
T7585 654-655 -RRB- denotes )
T7586 655-656 . denotes .
R1998 T7450 T7448 dobj cells,eliminating
R2000 T7451 T7450 amod bipolar,cells
R2002 T7452 T7451 cc and,bipolar
R2004 T7453 T7451 conj ganglion,bipolar
R2005 T7454 T7455 advmod as,as
R2006 T7455 T7450 cc as,cells
R2008 T7456 T7455 advmod well,as
R2009 T7457 T7458 amod many,rods
R2011 T7458 T7450 conj rods,cells
R2012 T7459 T7460 punct (,2A
R2013 T7460 T7448 parataxis 2A,eliminating
R2014 T7461 T7460 compound Figure,2A
R2016 T7462 T7463 punct –,2D
R2017 T7463 T7460 prep 2D,2A
R2019 T7464 T7460 punct ),2A
R2020 T7465 T7466 punct [,3
R2021 T7466 T7448 parataxis 3,eliminating
R2022 T7467 T7466 nummod 2,3
R2024 T7468 T7466 punct ",",3
R2025 T7469 T7466 punct ],3
R2027 T7470 T7437 punct .,results
R2029 T7472 T7473 det The,loss
R2030 T7473 T7474 nsubj loss,is
R2031 T7475 T7473 prep of,loss
R2032 T7476 T7477 compound Rb,KO
R2035 T7477 T7478 compound KO,rods
R2037 T7478 T7475 pobj rods,of
R2038 T7479 T7474 acomp evident,is
R2039 T7480 T7474 prep from,is
R2041 T7481 T7482 det the,ONL
R2043 T7482 T7480 pobj ONL,from
R2044 T7483 T7482 amod thinner,ONL
R2045 T7484 T7474 punct ", ",is
R2046 T7485 T7474 cc and,is
R2048 T7486 T7487 det the,death
R2049 T7487 T7488 nsubjpass death,detected
R2051 T7488 T7474 conj detected,is
R2052 T7489 T7487 prep of,death
R2053 T7490 T7491 det these,cells
R2055 T7491 T7489 pobj cells,of
R2056 T7492 T7493 advmod as,as
R2058 T7493 T7491 cc as,cells
R2059 T7494 T7493 advmod well,as
R2060 T7495 T7496 amod bipolar,neurons
R2062 T7496 T7491 conj neurons,cells
R2063 T7497 T7495 cc and,bipolar
R2064 T7498 T7495 conj ganglion,bipolar
R2066 T7499 T7488 aux can,detected
R2067 T7500 T7488 auxpass be,detected
R2068 T7501 T7488 advmod directly,detected
R2070 T7502 T7488 prep by,detected
R2071 T7503 T7504 advmod double,labelling
R2073 T7504 T7502 pcomp labelling,by
R2074 T7505 T7504 prep for,labelling
R2075 T7506 T7507 amod apoptotic,markers
R2077 T7507 T7505 pobj markers,for
R2078 T7508 T7506 cc and,apoptotic
R2080 T7509 T7510 compound cell,type
R2081 T7510 T7512 npadvmod type,specific
R2082 T7511 T7510 punct -,type
R2083 T7512 T7506 conj specific,apoptotic
R2084 T7513 T7512 punct -,specific
R2085 T7514 T7515 punct [,2
R2087 T7515 T7488 parataxis 2,detected
R2088 T7516 T7515 punct ],2
R2089 T7517 T7518 punct (,M.
R2091 T7518 T7488 meta M.,detected
R2092 T7519 T7518 nmod P.,M.
R2094 T7520 T7518 cc and,M.
R2095 T7521 T7518 conj R.,M.
R2096 T7522 T7521 nmod B.,R.
R2098 T7523 T7521 punct ", ",R.
R2099 T7524 T7525 amod unpublished,data
R2100 T7525 T7521 conj data,R.
R2102 T7526 T7525 punct ),data
R2103 T7527 T7488 punct .,detected
R2105 T7529 T7530 nsubj Loss,is
R2107 T7531 T7529 prep of,Loss
R2108 T7532 T7533 amod peripheral,cells
R2109 T7533 T7531 pobj cells,of
R2111 T7534 T7535 compound Rb,KO
R2112 T7535 T7533 compound KO,cells
R2113 T7536 T7533 compound ganglion,cells
R2115 T7537 T7530 advmod also,is
R2116 T7538 T7530 acomp evident,is
R2118 T7539 T7530 prep from,is
R2119 T7540 T7539 pobj thinning,from
R2120 T7541 T7540 prep of,thinning
R2122 T7542 T7543 det the,nerve
R2123 T7543 T7541 pobj nerve,of
R2124 T7544 T7543 amod optic,nerve
R2126 T7545 T7546 punct (,D.
R2127 T7546 T7530 meta D.,is
R2128 T7436 T7437 nsubj Loss,results
R2129 T7547 T7546 nmod C.,D.
R2130 T7548 T7546 cc and,D.
R2131 T7549 T7546 conj R.,D.
R2132 T7550 T7549 nmod B.,R.
R2133 T7438 T7436 prep of,Loss
R2134 T7551 T7549 punct ", ",R.
R2135 T7552 T7553 amod unpublished,data
R2136 T7553 T7549 conj data,R.
R2137 T7554 T7553 punct ),data
R2138 T7555 T7530 punct .,is
R2139 T7439 T7438 pobj Rb,of
R2140 T7440 T7436 prep in,Loss
R2141 T7441 T7442 det the,retina
R2142 T7557 T7558 csubj Deleting,blocked
R2143 T7442 T7440 pobj retina,in
R2144 T7559 T7557 dobj E2f1,Deleting
R2145 T7560 T7559 punct ", ",E2f1
R2146 T7443 T7437 prep in,results
R2147 T7561 T7559 cc but,E2f1
R2148 T7444 T7445 amod considerable,apoptosis
R2149 T7445 T7443 pobj apoptosis,in
R2150 T7446 T7445 compound RTC,apoptosis
R2153 T7447 T7437 punct ", ",results
R2155 T7448 T7437 advcl eliminating,results
R2160 T7449 T7450 amod most,cells
R2151 T7562 T7561 neg not,but
R2152 T7563 T7559 conj E2f2,E2f1
R2154 T7564 T7563 cc or,E2f2
R2156 T7565 T7563 conj E2f3,E2f2
R2157 T7566 T7558 punct ", ",blocked
R2158 T7567 T7568 det this,death
R2159 T7568 T7558 dobj death,blocked
R2161 T7569 T7568 amod ectopic,death
R2162 T7570 T7568 compound cell,death
R2164 T7571 T7558 prep in,blocked
R2165 T7572 T7573 det a,fashion
R2166 T7573 T7571 pobj fashion,in
R2167 T7574 T7575 npadvmod dose,dependent
R2168 T7575 T7573 amod dependent,fashion
R2170 T7576 T7575 punct -,dependent
R2171 T7577 T7578 punct (,1D
R2173 T7578 T7558 parataxis 1D,blocked
R2174 T7579 T7578 compound Figures,1D
R2175 T7580 T7578 punct ", ",1D
R2176 T7581 T7578 conj 1G,1D
R2178 T7582 T7581 punct ", ",1G
R2179 T7583 T7581 cc and,1G
R2180 T7584 T7581 conj S1B,1G
R2182 T7585 T7578 punct ),1D
R2183 T7586 T7558 punct .,blocked

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6821 8-10 PR_EXT:000013773 denotes Rb
T6822 18-24 UBERON:0000966 denotes retina
T6823 53-62 GO:0006915 denotes apoptosis
T6824 64-75 GO_EXT:killing denotes eliminating
T6825 81-88 _FRAGMENT denotes bipolar
T6826 102-107 CL:0000103 denotes cells
T6827 93-101 UBERON:0000045 denotes ganglion
T6828 93-107 CL:0000740 denotes ganglion cells
T6829 102-107 CL_GO_EXT:cell denotes cells
T6830 124-128 CL:0000604 denotes rods
T6831 163-165 PR_EXT:000013773 denotes Rb
T6832 169-173 CL:0000604 denotes rods
T6833 202-205 UBERON:0001789 denotes ONL
T6834 215-223 _FRAGMENT denotes death of
T6835 230-235 GO:0008219 denotes cells
T6836 230-235 CL_GO_EXT:cell denotes cells
T6837 247-254 _FRAGMENT denotes bipolar
T6838 268-275 CL:0000103 denotes neurons
T6839 259-267 UBERON:0000045 denotes ganglion
T6840 259-275 CL:0000740 denotes ganglion neurons
T6841 311-320 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelling
T6842 325-334 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T6843 339-343 CL_GO_EXT:cell denotes cell
T6844 358-365 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes markers
T6845 426-428 PR_EXT:000013773 denotes Rb
T6846 432-440 UBERON:0000045 denotes ganglion
T6847 432-446 CL:0000740 denotes ganglion cells
T6848 441-446 CL_GO_EXT:cell denotes cells
T6849 484-495 UBERON_EXT:optic_nerve denotes optic nerve
T6850 533-541 SO_EXT:sequence_deletion_process denotes Deleting
T6851 542-546 PR_EXT:000006852 denotes E2f1
T6852 556-560 PR_EXT:000006853 denotes E2f2
T6853 564-568 PR_EXT:000006854 denotes E2f3
T6854 591-595 CL_GO_EXT:cell denotes cell
T6855 591-601 GO:0008219 denotes cell death
R1516 T6826 T6825 _lexicallyChainedTo cells,bipolar
R1517 T6835 T6834 _lexicallyChainedTo cells,death of
R1518 T6838 T6837 _lexicallyChainedTo neurons,bipolar

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6670 124-128 CL:0000604 denotes rods
T6671 163-165 PR:000013773 denotes Rb
T6672 169-173 CL:0000604 denotes rods
T6673 202-205 UBERON:0001789 denotes ONL
T6674 215-223 _FRAGMENT denotes death of
T6675 230-235 GO:0008219 denotes cells
T6676 247-254 _FRAGMENT denotes bipolar
T6677 268-275 CL:0000103 denotes neurons
T6678 259-267 UBERON:0000045 denotes ganglion
T6679 259-275 CL:0000740 denotes ganglion neurons
T6680 426-428 PR:000013773 denotes Rb
T6681 432-440 UBERON:0000045 denotes ganglion
T6682 432-446 CL:0000740 denotes ganglion cells
T6683 484-489 UBERON:0000970 denotes optic
T6684 542-546 PR:000006852 denotes E2f1
T6685 556-560 PR:000006853 denotes E2f2
T6686 564-568 PR:000006854 denotes E2f3
T6687 591-601 GO:0008219 denotes cell death
T6663 8-10 PR:000013773 denotes Rb
T6664 18-24 UBERON:0000966 denotes retina
T6665 53-62 GO:0006915 denotes apoptosis
T6666 81-88 _FRAGMENT denotes bipolar
T6667 102-107 CL:0000103 denotes cells
T6668 93-101 UBERON:0000045 denotes ganglion
T6669 93-107 CL:0000740 denotes ganglion cells
R1513 T6667 T6666 _lexicallyChainedTo cells,bipolar
R1514 T6675 T6674 _lexicallyChainedTo cells,death of
R1515 T6677 T6676 _lexicallyChainedTo neurons,bipolar

2_test

Id Subject Object Predicate Lexical cue
17608565-15193257-84868975 145-146 15193257 denotes 2
17608565-15231717-84868976 147-148 15231717 denotes 3
17608565-15193257-84868977 367-368 15193257 denotes 2
T2822 145-146 15193257 denotes 2
T607 147-148 15231717 denotes 3
T62078 367-368 15193257 denotes 2