Table 4  Comparison of classification accuracies versus EvoFold.
Naïve EvoFold-based classification
correct  incorrect
RNAstrand  fwd  correct  123 [111;12]  16 [15;1]
incorrect  17 [17; 0]  11 [8;3]
rev  correct  121 [109;12]  12 [11;1]
incorrect  19 [19; 0]  15 [12;3]
all  correct  244 [220;24]  28 [26;2]
incorrect  36 [36; 0]  26 [20;6]
Strand prediction of RNAstrand compared to naïve prediction of EvoFold. The first row of the table refers to alignments of known ncRNA loci given in the direction of the ncRNA. The second row belongs to the corresponding reverse complementary alignments. The last row summarizes the first and second row. First numbers in brackets give classifications of alignments containing miRNAs and second numbers belong to alignments containing other ncRNAs.