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PMC:1853120 / 5012-5889 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T4338 0-3 DT denotes The
T4339 4-13 NN denotes existence
T4340 85-92 VBZ denotes creates
T4341 14-16 IN denotes of
T4342 17-30 JJ denotes heteromorphic
T4343 35-46 NNS denotes chromosomes
T4344 31-34 NN denotes sex
T4345 46-48 , denotes ,
T4346 48-52 JJ denotes such
T4347 53-55 IN denotes as
T4348 56-59 DT denotes the
T4349 66-72 NN denotes system
T4350 60-62 NN denotes XX
T4351 63-65 NN denotes XY
T4352 62-63 HYPH denotes /
T4353 73-75 IN denotes of
T4354 76-83 NNS denotes mammals
T4355 83-85 , denotes ,
T4356 93-96 NN denotes sex
T4357 97-105 JJ denotes specific
T4358 96-97 HYPH denotes -
T4359 106-116 NNS denotes challenges
T4360 116-117 . denotes .
T4361 117-289 sentence denotes One is the need for mechanisms to balance expression of sex-linked genes between the sexes, which in mammals is accomplished by X chromosome inactivation in females [5,6].
T4362 118-121 CD denotes One
T4363 122-124 VBZ denotes is
T4364 125-128 DT denotes the
T4365 129-133 NN denotes need
T4366 134-137 IN denotes for
T4367 138-148 NNS denotes mechanisms
T4368 149-151 TO denotes to
T4369 152-159 VB denotes balance
T4370 160-170 NN denotes expression
T4371 171-173 IN denotes of
T4372 174-177 NN denotes sex
T4373 178-184 VBN denotes linked
T4374 177-178 HYPH denotes -
T4375 185-190 NNS denotes genes
T4376 191-198 IN denotes between
T4377 199-202 DT denotes the
T4378 203-208 NNS denotes sexes
T4379 208-210 , denotes ,
T4380 210-215 WDT denotes which
T4381 230-242 VBN denotes accomplished
T4382 216-218 IN denotes in
T4383 219-226 NNS denotes mammals
T4384 227-229 VBZ denotes is
T4385 243-245 IN denotes by
T4386 246-247 NN denotes X
T4387 248-258 NN denotes chromosome
T4388 259-271 NN denotes inactivation
T4389 272-274 IN denotes in
T4390 275-282 NNS denotes females
T4391 283-284 -LRB- denotes [
T4392 286-287 CD denotes 6
T4393 284-285 CD denotes 5
T4394 285-286 , denotes ,
T4395 287-288 -RRB- denotes ]
T4396 288-289 . denotes .
T4397 289-368 sentence denotes In male germ cells there is another sex-specific consideration during meiosis.
T4398 290-292 IN denotes In
T4399 315-317 VBZ denotes is
T4400 293-297 JJ denotes male
T4401 303-308 NNS denotes cells
T4402 298-302 NN denotes germ
T4403 309-314 EX denotes there
T4404 318-325 DT denotes another
T4405 339-352 NN denotes consideration
T4406 326-329 NN denotes sex
T4407 330-338 JJ denotes specific
T4408 329-330 HYPH denotes -
T4409 353-359 IN denotes during
T4410 360-367 NN denotes meiosis
T4411 367-368 . denotes .
T4412 368-597 sentence denotes In prophase I, when the homologous chromosomes synapse and homologous recombination occurs, X and Y chromosome pairing is limited to a region termed the pseudoautosomal region, leaving large portions of each chromosome unpaired.
T4413 369-371 IN denotes In
T4414 491-498 VBN denotes limited
T4415 372-380 NN denotes prophase
T4416 381-382 CD denotes I
T4417 382-384 , denotes ,
T4418 384-388 WRB denotes when
T4419 416-423 VBP denotes synapse
T4420 389-392 DT denotes the
T4421 404-415 NNS denotes chromosomes
T4422 393-403 JJ denotes homologous
T4423 424-427 CC denotes and
T4424 428-438 JJ denotes homologous
T4425 439-452 NN denotes recombination
T4426 453-459 VBZ denotes occurs
T4427 459-461 , denotes ,
T4428 461-462 NN denotes X
T4429 469-479 NN denotes chromosome
T4430 463-466 CC denotes and
T4431 467-468 NN denotes Y
T4432 480-487 NN denotes pairing
T4433 488-490 VBZ denotes is
T4434 499-501 IN denotes to
T4435 502-503 DT denotes a
T4436 504-510 NN denotes region
T4437 511-517 VBN denotes termed
T4438 518-521 DT denotes the
T4439 538-544 NN denotes region
T4440 522-537 JJ denotes pseudoautosomal
T4441 544-546 , denotes ,
T4442 546-553 VBG denotes leaving
T4443 554-559 JJ denotes large
T4444 560-568 NNS denotes portions
T4445 569-571 IN denotes of
T4446 572-576 DT denotes each
T4447 577-587 NN denotes chromosome
T4448 588-596 JJ denotes unpaired
T4449 596-597 . denotes .
T4450 597-750 sentence denotes In eutherian and marsupial mammals, these unpaired chromosome regions are associated with a specialized chromatin domain termed the XY body or sex body.
T4451 598-600 IN denotes In
T4452 672-682 VBN denotes associated
T4453 601-610 JJ denotes eutherian
T4454 625-632 NNS denotes mammals
T4455 611-614 CC denotes and
T4456 615-624 JJ denotes marsupial
T4457 632-634 , denotes ,
T4458 634-639 DT denotes these
T4459 660-667 NNS denotes regions
T4460 640-648 JJ denotes unpaired
T4461 649-659 NN denotes chromosome
T4462 668-671 VBP denotes are
T4463 683-687 IN denotes with
T4464 688-689 DT denotes a
T4465 712-718 NN denotes domain
T4466 690-701 VBN denotes specialized
T4467 702-711 NN denotes chromatin
T4468 719-725 VBN denotes termed
T4469 726-729 DT denotes the
T4470 733-737 NN denotes body
T4471 730-732 NN denotes XY
T4472 738-740 CC denotes or
T4473 741-744 NN denotes sex
T4474 745-749 NN denotes body
T4475 749-750 . denotes .
T4476 750-877 sentence denotes The function of the XY body is uncertain [7–11], but there is evidence that it is essential for male meiotic progression [12].
T4477 751-754 DT denotes The
T4478 755-763 NN denotes function
T4479 779-781 VBZ denotes is
T4480 764-766 IN denotes of
T4481 767-770 DT denotes the
T4482 774-778 NN denotes body
T4483 771-773 NN denotes XY
T4484 782-791 JJ denotes uncertain
T4485 792-793 -LRB- denotes [
T4486 793-794 CD denotes 7
T4487 794-795 SYM denotes –
T4488 795-797 CD denotes 11
T4489 797-798 -RRB- denotes ]
T4490 798-800 , denotes ,
T4491 800-803 CC denotes but
T4492 804-809 EX denotes there
T4493 810-812 VBZ denotes is
T4494 813-821 NN denotes evidence
T4495 822-826 IN denotes that
T4496 830-832 VBZ denotes is
T4497 827-829 PRP denotes it
T4498 833-842 JJ denotes essential
T4499 843-846 IN denotes for
T4500 847-851 JJ denotes male
T4501 860-871 NN denotes progression
T4502 852-859 JJ denotes meiotic
T4503 872-873 -LRB- denotes [
T4504 873-875 CD denotes 12
T4505 875-876 -RRB- denotes ]
T4506 876-877 . denotes .
R621 T4338 T4339 det The,existence
R622 T4339 T4340 nsubj existence,creates
R624 T4341 T4339 prep of,existence
R625 T4342 T4343 amod heteromorphic,chromosomes
R626 T4343 T4341 pobj chromosomes,of
R627 T4344 T4343 compound sex,chromosomes
R628 T4345 T4343 punct ", ",chromosomes
R629 T4346 T4347 amod such,as
R631 T4347 T4343 prep as,chromosomes
R632 T4348 T4349 det the,system
R633 T4349 T4347 pobj system,as
R635 T4350 T4351 compound XX,XY
R636 T4351 T4349 compound XY,system
R637 T4352 T4351 punct /,XY
R641 T4353 T4349 prep of,system
R642 T4354 T4353 pobj mammals,of
R643 T4355 T4340 punct ", ",creates
R645 T4356 T4357 npadvmod sex,specific
R647 T4357 T4359 amod specific,challenges
R648 T4358 T4357 punct -,specific
R650 T4359 T4340 dobj challenges,creates
R651 T4360 T4340 punct .,creates
R654 T4362 T4363 nsubj One,is
R656 T4364 T4365 det the,need
R657 T4365 T4363 attr need,is
R659 T4366 T4365 prep for,need
R660 T4367 T4366 pobj mechanisms,for
R661 T4368 T4369 aux to,balance
R663 T4369 T4367 acl balance,mechanisms
R664 T4370 T4369 dobj expression,balance
R666 T4371 T4370 prep of,expression
R667 T4372 T4373 npadvmod sex,linked
R668 T4373 T4375 amod linked,genes
R670 T4374 T4373 punct -,linked
R671 T4375 T4371 pobj genes,of
R673 T4376 T4370 prep between,expression
R674 T4377 T4378 det the,sexes
R675 T4378 T4376 pobj sexes,between
R676 T4459 T4452 nsubjpass regions,associated
R677 T4379 T4370 punct ", ",expression
R678 T4380 T4381 dep which,accomplished
R679 T4381 T4370 relcl accomplished,expression
R680 T4382 T4381 prep in,accomplished
R681 T4383 T4382 pobj mammals,in
R682 T4384 T4381 auxpass is,accomplished
R683 T4385 T4381 prep by,accomplished
R684 T4386 T4387 compound X,chromosome
R685 T4387 T4388 compound chromosome,inactivation
R686 T4388 T4385 pobj inactivation,by
R687 T4460 T4459 amod unpaired,regions
R688 T4389 T4388 prep in,inactivation
R689 T4390 T4389 pobj females,in
R690 T4391 T4392 punct [,6
R691 T4392 T4363 parataxis 6,is
R692 T4393 T4392 nummod 5,6
R693 T4461 T4459 compound chromosome,regions
R694 T4394 T4392 punct ",",6
R695 T4395 T4392 punct ],6
R696 T4396 T4363 punct .,is
R697 T4398 T4399 prep In,is
R698 T4462 T4452 auxpass are,associated
R699 T4400 T4401 amod male,cells
R700 T4401 T4398 pobj cells,In
R701 T4402 T4401 compound germ,cells
R702 T4463 T4452 prep with,associated
R703 T4403 T4399 expl there,is
R704 T4404 T4405 det another,consideration
R705 T4405 T4399 attr consideration,is
R706 T4464 T4465 det a,domain
R707 T4406 T4407 npadvmod sex,specific
R708 T4407 T4405 amod specific,consideration
R709 T4408 T4407 punct -,specific
R710 T4465 T4463 pobj domain,with
R711 T4409 T4399 prep during,is
R712 T4410 T4409 pobj meiosis,during
R713 T4411 T4399 punct .,is
R714 T4466 T4465 amod specialized,domain
R715 T4413 T4414 prep In,limited
R716 T4467 T4465 compound chromatin,domain
R717 T4415 T4413 pobj prophase,In
R718 T4416 T4415 nummod I,prophase
R719 T4417 T4415 punct ", ",prophase
R720 T4468 T4465 acl termed,domain
R721 T4418 T4419 advmod when,synapse
R722 T4419 T4415 relcl synapse,prophase
R723 T4420 T4421 det the,chromosomes
R724 T4469 T4470 det the,body
R725 T4421 T4419 nsubj chromosomes,synapse
R726 T4422 T4421 amod homologous,chromosomes
R727 T4470 T4468 oprd body,termed
R728 T4423 T4419 cc and,synapse
R729 T4424 T4425 amod homologous,recombination
R730 T4471 T4470 compound XY,body
R731 T4425 T4426 nsubj recombination,occurs
R732 T4426 T4419 conj occurs,synapse
R733 T4427 T4414 punct ", ",limited
R734 T4428 T4429 nmod X,chromosome
R735 T4429 T4432 compound chromosome,pairing
R736 T4430 T4428 cc and,X
R737 T4431 T4428 conj Y,X
R738 T4432 T4414 nsubjpass pairing,limited
R739 T4433 T4414 auxpass is,limited
R740 T4472 T4470 cc or,body
R741 T4434 T4414 prep to,limited
R742 T4435 T4436 det a,region
R743 T4436 T4434 pobj region,to
R744 T4437 T4436 acl termed,region
R745 T4473 T4474 compound sex,body
R746 T4438 T4439 det the,region
R747 T4439 T4437 oprd region,termed
R748 T4440 T4439 amod pseudoautosomal,region
R749 T4474 T4470 conj body,body
R750 T4441 T4414 punct ", ",limited
R751 T4442 T4414 advcl leaving,limited
R752 T4443 T4444 amod large,portions
R753 T4475 T4452 punct .,associated
R754 T4444 T4442 dobj portions,leaving
R755 T4445 T4444 prep of,portions
R756 T4446 T4447 det each,chromosome
R757 T4477 T4478 det The,function
R758 T4447 T4445 pobj chromosome,of
R759 T4478 T4479 nsubj function,is
R760 T4448 T4442 oprd unpaired,leaving
R761 T4449 T4414 punct .,limited
R762 T4480 T4478 prep of,function
R763 T4451 T4452 prep In,associated
R764 T4453 T4454 amod eutherian,mammals
R765 T4481 T4482 det the,body
R766 T4454 T4451 pobj mammals,In
R767 T4455 T4453 cc and,eutherian
R768 T4456 T4453 conj marsupial,eutherian
R769 T4482 T4480 pobj body,of
R770 T4457 T4452 punct ", ",associated
R771 T4458 T4459 det these,regions
R772 T4483 T4482 compound XY,body
R773 T4484 T4479 acomp uncertain,is
R774 T4485 T4486 punct [,7
R775 T4486 T4479 parataxis 7,is
R776 T4487 T4488 punct –,11
R779 T4488 T4486 prep 11,7
R782 T4489 T4486 punct ],7
R789 T4490 T4479 punct ", ",is
R792 T4491 T4479 cc but,is
R796 T4492 T4493 expl there,is
R798 T4493 T4479 conj is,is
R802 T4494 T4493 attr evidence,is
R805 T4495 T4496 mark that,is
R806 T4496 T4494 acl is,evidence
R809 T4497 T4496 nsubj it,is
R812 T4498 T4496 acomp essential,is
R816 T4499 T4498 prep for,essential
R819 T4500 T4501 amod male,progression
R823 T4501 T4499 pobj progression,for
R826 T4502 T4501 amod meiotic,progression
R828 T4503 T4504 punct [,12
R832 T4504 T4493 parataxis 12,is
R835 T4505 T4504 punct ],12
R841 T4506 T4493 punct .,is

2_test

Id Subject Object Predicate Lexical cue
17447844-16847345-85805799 284-285 16847345 denotes 5
17447844-15818384-85805800 286-287 15818384 denotes 6
17447844-8432196-85805801 793-794 8432196 denotes 7
17447844-11242108-85805801 793-794 11242108 denotes 7
17447844-3226141-85805801 793-794 3226141 denotes 7
17447844-9500548-85805801 793-794 9500548 denotes 7
17447844-15051945-85805801 793-794 15051945 denotes 7
17447844-12689589-85805802 873-875 12689589 denotes 12
T50692 284-285 16847345 denotes 5
T24257 286-287 15818384 denotes 6
T34775 793-794 8432196 denotes 7
T93921 793-794 11242108 denotes 7
T22980 793-794 3226141 denotes 7
T23223 793-794 9500548 denotes 7
T69726 793-794 15051945 denotes 7
T76085 873-875 12689589 denotes 12

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3541 76-83 NCBITaxon:40674 denotes mammals
T3542 160-170 GO:0010467 denotes expression
T3543 185-190 SO:0000704 denotes genes
T3544 219-226 NCBITaxon:40674 denotes mammals
T3545 246-258 GO:0000805 denotes X chromosome
T3546 246-271 GO:0009048 denotes X chromosome inactivation
T3547 293-308 CL:0000015 denotes male germ cells
T3548 360-367 GO:0007126 denotes meiosis
T3549 372-382 GO:0007128 denotes prophase I
T3540 31-46 GO:0000803 denotes sex chromosomes
T3550 416-423 GO:0007129 denotes synapse
T3551 461-462 _FRAGMENT denotes X
T3552 469-479 GO:0000805 denotes chromosome
T3553 467-479 GO:0000806 denotes Y chromosome
T3554 469-487 GO:0007129 denotes chromosome pairing
T3555 601-610 _FRAGMENT denotes eutherian
T3556 625-632 NCBITaxon:9347 denotes mammals
T3557 615-632 NCBITaxon:9263 denotes marsupial mammals
T3558 702-711 GO:0000785 denotes chromatin
T3559 730-737 GO:0001741 denotes XY body
T3560 741-749 GO:0001741 denotes sex body
T3561 771-778 GO:0001741 denotes XY body
T3562 847-859 GO:0007140 denotes male meiotic
R306 T3552 T3551 _lexicallyChainedTo chromosome,X
R307 T3556 T3555 _lexicallyChainedTo mammals,eutherian

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3765 31-46 GO:0000803 denotes sex chromosomes
T3766 35-46 GO_SO_EXT:chromosome denotes chromosomes
T3767 76-83 NCBITaxon:40674 denotes mammals
T3768 160-170 GO:0010467 denotes expression
T3769 185-190 SO_EXT:0000704 denotes genes
T3770 219-226 NCBITaxon:40674 denotes mammals
T3771 246-258 GO:0000805 denotes X chromosome
T3772 246-271 GO:0009048 denotes X chromosome inactivation
T3773 248-258 GO_SO_EXT:chromosome denotes chromosome
T3774 275-282 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T3775 293-297 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes male
T3776 293-308 CL:0000015 denotes male germ cells
T3777 303-308 CL_GO_EXT:cell denotes cells
T3778 360-367 GO:0007126 denotes meiosis
T3779 372-382 GO:0007128 denotes prophase I
T3780 404-415 GO_SO_EXT:chromosome denotes chromosomes
T3781 416-423 GO:0007129 denotes synapse
T3782 439-452 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T3783 461-462 _FRAGMENT denotes X
T3784 469-479 GO:0000805 denotes chromosome
T3785 467-479 GO:0000806 denotes Y chromosome
T3786 469-479 GO_SO_EXT:chromosome denotes chromosome
T3787 469-487 GO:0007129 denotes chromosome pairing
T3788 560-571 _FRAGMENT denotes portions of
T3789 577-587 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosome
T3790 577-587 GO_SO_EXT:chromosome denotes chromosome
T3791 601-610 _FRAGMENT denotes eutherian
T3792 625-632 NCBITaxon:9347 denotes mammals
T3793 615-632 NCBITaxon:9263 denotes marsupial mammals
T3794 649-667 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosome regions
T3795 702-711 GO:0000785 denotes chromatin
T3796 730-737 GO:0001741 denotes XY body
T3797 741-749 GO:0001741 denotes sex body
T3798 771-778 GO:0001741 denotes XY body
T3799 847-851 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes male
T3800 847-859 GO:0007140 denotes male meiotic
R309 T3784 T3783 _lexicallyChainedTo chromosome,X
R310 T3789 T3788 _lexicallyChainedTo chromosome,portions of
R311 T3792 T3791 _lexicallyChainedTo mammals,eutherian