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PMC:1853120 / 37883-38655 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T21791 249-262 NN denotes recombination
T21792 270-276 JJ denotes normal
T21793 277-279 IN denotes in
T21794 280-285 NN denotes Dmrt7
T21749 0-5 IN denotes Since
T21750 67-73 VB denotes result
T21751 6-9 DT denotes the
T21752 10-16 NN denotes arrest
T21753 17-20 CC denotes and
T21754 21-30 NN denotes apoptosis
T21755 31-33 IN denotes of
T21756 34-39 NN denotes Dmrt7
T21757 40-46 NN denotes mutant
T21758 47-60 NNS denotes spermatocytes
T21759 61-66 MD denotes could
T21760 152-158 VBD denotes tested
T21761 74-78 IN denotes from
T21762 79-91 NN denotes perturbation
T21763 92-94 IN denotes of
T21764 95-98 DT denotes any
T21765 99-101 IN denotes of
T21766 102-105 DT denotes the
T21767 125-131 NNS denotes events
T21768 106-114 JJ denotes critical
T21769 115-124 NN denotes pachytene
T21770 132-141 VBN denotes mentioned
T21771 142-147 RB denotes above
T21772 147-149 , denotes ,
T21773 149-151 PRP denotes we
T21774 159-166 IN denotes whether
T21775 172-177 VBP denotes occur
T21776 167-171 PRP denotes they
T21777 178-188 RB denotes abnormally
T21778 189-191 IN denotes in
T21779 192-195 DT denotes the
T21780 203-208 NNS denotes cells
T21781 196-202 NN denotes mutant
T21782 208-209 . denotes .
T21783 209-299 sentence denotes We found that chromosomal synapsis and recombination appear normal in Dmrt7 mutant cells.
T21784 210-212 PRP denotes We
T21785 213-218 VBD denotes found
T21786 219-223 IN denotes that
T21787 263-269 VBP denotes appear
T21788 224-235 JJ denotes chromosomal
T21789 236-244 NN denotes synapsis
T21790 245-248 CC denotes and
T21795 286-292 NN denotes mutant
T21796 293-298 NNS denotes cells
T21797 298-299 . denotes .
T21798 299-383 sentence denotes We therefore focused on the XY body, the most prominent site of DMRT7 accumulation.
T21799 300-302 PRP denotes We
T21800 313-320 VBD denotes focused
T21801 303-312 RB denotes therefore
T21802 321-323 IN denotes on
T21803 324-327 DT denotes the
T21804 331-335 NN denotes body
T21805 328-330 NN denotes XY
T21806 335-337 , denotes ,
T21807 337-340 DT denotes the
T21808 356-360 NN denotes site
T21809 341-345 RBS denotes most
T21810 346-355 JJ denotes prominent
T21811 361-363 IN denotes of
T21812 364-369 NN denotes DMRT7
T21813 370-382 NN denotes accumulation
T21814 382-383 . denotes .
T21815 383-473 sentence denotes First, we tested whether the XY body forms and MSCI is established in Dmrt7 mutant cells.
T21816 384-389 RB denotes First
T21817 394-400 VBD denotes tested
T21818 389-391 , denotes ,
T21819 391-393 PRP denotes we
T21820 401-408 IN denotes whether
T21821 421-426 VBZ denotes forms
T21822 409-412 DT denotes the
T21823 416-420 NN denotes body
T21824 413-415 NN denotes XY
T21825 427-430 CC denotes and
T21826 431-435 NN denotes MSCI
T21827 439-450 VBN denotes established
T21828 436-438 VBZ denotes is
T21829 451-453 IN denotes in
T21830 454-459 NN denotes Dmrt7
T21831 460-466 NN denotes mutant
T21832 467-472 NNS denotes cells
T21833 472-473 . denotes .
T21834 473-616 sentence denotes Surprisingly, we found that these cells form an XY body with normal morphology and proper accumulation of all the chromatin marks we examined.
T21835 474-486 RB denotes Surprisingly
T21836 491-496 VBD denotes found
T21837 486-488 , denotes ,
T21838 488-490 PRP denotes we
T21839 497-501 IN denotes that
T21840 514-518 VBP denotes form
T21841 502-507 DT denotes these
T21842 508-513 NNS denotes cells
T21843 519-521 DT denotes an
T21844 525-529 NN denotes body
T21845 522-524 NN denotes XY
T21846 530-534 IN denotes with
T21847 535-541 JJ denotes normal
T21848 542-552 NN denotes morphology
T21849 553-556 CC denotes and
T21850 557-563 JJ denotes proper
T21851 564-576 NN denotes accumulation
T21852 577-579 IN denotes of
T21853 580-583 PDT denotes all
T21854 598-603 NNS denotes marks
T21855 584-587 DT denotes the
T21856 588-597 NN denotes chromatin
T21857 604-606 PRP denotes we
T21858 607-615 VBD denotes examined
T21859 615-616 . denotes .
T21860 616-772 sentence denotes Moreover, Cot-1 hybridization and analysis of RBMY expression demonstrated that MSCI initiates normally in the XY body of mid-pachytene Dmrt7 mutant cells.
T21861 617-625 RB denotes Moreover
T21862 679-691 VBD denotes demonstrated
T21863 625-627 , denotes ,
T21864 627-630 NN denotes Cot
T21865 633-646 NN denotes hybridization
T21866 630-631 HYPH denotes -
T21867 631-632 CD denotes 1
T21868 647-650 CC denotes and
T21869 651-659 NN denotes analysis
T21870 660-662 IN denotes of
T21871 663-667 NN denotes RBMY
T21872 668-678 NN denotes expression
T21873 692-696 IN denotes that
T21874 702-711 VBZ denotes initiates
T21875 697-701 NN denotes MSCI
T21876 712-720 RB denotes normally
T21877 721-723 IN denotes in
T21878 724-727 DT denotes the
T21879 731-735 NN denotes body
T21880 728-730 NN denotes XY
T21881 736-738 IN denotes of
T21882 739-752 NN denotes mid-pachytene
T21883 766-771 NNS denotes cells
T21884 753-758 NN denotes Dmrt7
T21885 759-765 NN denotes mutant
T21886 771-772 . denotes .
R5313 T21749 T21750 mark Since,result
R5314 T21750 T21760 advcl result,tested
R5315 T21751 T21752 det the,arrest
R5316 T21752 T21750 nsubj arrest,result
R5317 T21753 T21752 cc and,arrest
R5318 T21754 T21752 conj apoptosis,arrest
R5319 T21755 T21752 prep of,arrest
R5320 T21756 T21757 compound Dmrt7,mutant
R5321 T21757 T21758 compound mutant,spermatocytes
R5322 T21758 T21755 pobj spermatocytes,of
R5323 T21759 T21750 aux could,result
R5324 T21761 T21750 prep from,result
R5325 T21762 T21761 pobj perturbation,from
R5326 T21763 T21762 prep of,perturbation
R5327 T21764 T21763 pobj any,of
R5328 T21765 T21764 prep of,any
R5329 T21766 T21767 det the,events
R5330 T21767 T21765 pobj events,of
R5331 T21768 T21767 amod critical,events
R5332 T21769 T21767 compound pachytene,events
R5333 T21770 T21767 acl mentioned,events
R5334 T21771 T21770 advmod above,mentioned
R5335 T21772 T21760 punct ", ",tested
R5336 T21773 T21760 nsubj we,tested
R5337 T21774 T21775 mark whether,occur
R5338 T21775 T21760 ccomp occur,tested
R5339 T21776 T21775 nsubj they,occur
R5340 T21777 T21775 advmod abnormally,occur
R5341 T21778 T21775 prep in,occur
R5342 T21779 T21780 det the,cells
R5343 T21780 T21778 pobj cells,in
R5344 T21781 T21780 compound mutant,cells
R5345 T21782 T21760 punct .,tested
R5346 T21784 T21785 nsubj We,found
R5347 T21786 T21787 mark that,appear
R5348 T21787 T21785 ccomp appear,found
R5349 T21788 T21789 amod chromosomal,synapsis
R5350 T21789 T21787 nsubj synapsis,appear
R5351 T21790 T21789 cc and,synapsis
R5352 T21791 T21789 conj recombination,synapsis
R5353 T21792 T21787 oprd normal,appear
R5354 T21793 T21787 prep in,appear
R5355 T21794 T21795 compound Dmrt7,mutant
R5356 T21795 T21796 compound mutant,cells
R5357 T21796 T21793 pobj cells,in
R5358 T21797 T21785 punct .,found
R5359 T21799 T21800 nsubj We,focused
R5360 T21801 T21800 advmod therefore,focused
R5361 T21802 T21800 prep on,focused
R5362 T21803 T21804 det the,body
R5363 T21804 T21802 pobj body,on
R5364 T21805 T21804 compound XY,body
R5365 T21806 T21804 punct ", ",body
R5366 T21807 T21808 det the,site
R5367 T21808 T21804 appos site,body
R5368 T21809 T21810 advmod most,prominent
R5369 T21810 T21808 amod prominent,site
R5370 T21811 T21808 prep of,site
R5371 T21812 T21813 compound DMRT7,accumulation
R5372 T21813 T21811 pobj accumulation,of
R5373 T21814 T21800 punct .,focused
R5374 T21816 T21817 advmod First,tested
R5375 T21818 T21817 punct ", ",tested
R5376 T21819 T21817 nsubj we,tested
R5377 T21820 T21821 mark whether,forms
R5378 T21821 T21817 ccomp forms,tested
R5379 T21822 T21823 det the,body
R5380 T21823 T21821 nsubj body,forms
R5381 T21824 T21823 compound XY,body
R5382 T21825 T21821 cc and,forms
R5383 T21826 T21827 nsubjpass MSCI,established
R5384 T21827 T21821 conj established,forms
R5385 T21828 T21827 auxpass is,established
R5386 T21829 T21821 prep in,forms
R5387 T21830 T21831 compound Dmrt7,mutant
R5388 T21831 T21832 compound mutant,cells
R5389 T21832 T21829 pobj cells,in
R5390 T21833 T21817 punct .,tested
R5391 T21835 T21836 advmod Surprisingly,found
R5392 T21837 T21836 punct ", ",found
R5393 T21838 T21836 nsubj we,found
R5394 T21839 T21840 mark that,form
R5395 T21840 T21836 ccomp form,found
R5396 T21841 T21842 det these,cells
R5397 T21842 T21840 nsubj cells,form
R5398 T21843 T21844 det an,body
R5399 T21844 T21840 dobj body,form
R5400 T21845 T21844 compound XY,body
R5401 T21846 T21844 prep with,body
R5402 T21847 T21848 amod normal,morphology
R5403 T21848 T21846 pobj morphology,with
R5404 T21849 T21848 cc and,morphology
R5405 T21850 T21851 amod proper,accumulation
R5406 T21851 T21848 conj accumulation,morphology
R5407 T21852 T21851 prep of,accumulation
R5408 T21853 T21854 predet all,marks
R5409 T21854 T21852 pobj marks,of
R5410 T21855 T21854 det the,marks
R5411 T21856 T21854 compound chromatin,marks
R5412 T21857 T21858 nsubj we,examined
R5413 T21858 T21854 advcl examined,marks
R5414 T21859 T21836 punct .,found
R5415 T21861 T21862 advmod Moreover,demonstrated
R5416 T21863 T21862 punct ", ",demonstrated
R5417 T21864 T21865 nmod Cot,hybridization
R5418 T21865 T21862 nsubj hybridization,demonstrated
R5419 T21866 T21864 punct -,Cot
R5420 T21867 T21864 nummod 1,Cot
R5421 T21868 T21865 cc and,hybridization
R5422 T21869 T21865 conj analysis,hybridization
R5423 T21870 T21869 prep of,analysis
R5424 T21871 T21872 compound RBMY,expression
R5425 T21872 T21870 pobj expression,of
R5426 T21873 T21874 mark that,initiates
R5427 T21874 T21862 ccomp initiates,demonstrated
R5428 T21875 T21874 nsubj MSCI,initiates
R5429 T21876 T21874 advmod normally,initiates
R5430 T21877 T21874 prep in,initiates
R5431 T21878 T21879 det the,body
R5432 T21879 T21877 pobj body,in
R5433 T21880 T21879 compound XY,body
R5434 T21881 T21879 prep of,body
R5435 T21882 T21883 compound mid-pachytene,cells
R5436 T21883 T21881 pobj cells,of
R5437 T21884 T21885 compound Dmrt7,mutant
R5438 T21885 T21883 compound mutant,cells
R5439 T21886 T21862 punct .,demonstrated

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T20944 21-30 GO:0006915 denotes apoptosis
T20945 34-39 PR:000006549 denotes Dmrt7
T20946 47-60 CL:0000017 denotes spermatocytes
T20947 115-124 GO:0000239 denotes pachytene
T20948 224-244 GO:0007129 denotes chromosomal synapsis
T20949 280-285 PR:000006549 denotes Dmrt7
T20950 328-335 GO:0001741 denotes XY body
T20951 364-369 PR:000006549 denotes DMRT7
T20952 413-420 GO:0001741 denotes XY body
T20953 454-459 PR:000006549 denotes Dmrt7
T20954 522-529 GO:0001741 denotes XY body
T20955 588-597 GO:0000785 denotes chromatin
T20956 633-646 GO:0097617 denotes hybridization
T20957 663-667 PR:000030954 denotes RBMY
T20958 668-678 GO:0010467 denotes expression
T20959 728-735 GO:0001741 denotes XY body
T20960 743-752 GO:0000239 denotes pachytene
T20961 753-758 PR:000006549 denotes Dmrt7

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T21205 21-30 GO:0006915 denotes apoptosis
T21206 34-39 PR_EXT:000006549 denotes Dmrt7
T21207 40-46 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T21208 47-60 CL:0000017 denotes spermatocytes
T21209 115-124 GO:0000239 denotes pachytene
T21210 196-202 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T21211 203-208 CL_GO_EXT:cell denotes cells
T21212 224-235 GO_SO_EXT:chromosome denotes chromosomal
T21213 224-244 GO:0007129 denotes chromosomal synapsis
T21214 249-262 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T21215 280-285 PR_EXT:000006549 denotes Dmrt7
T21216 286-292 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T21217 293-298 CL_GO_EXT:cell denotes cells
T21218 328-335 GO:0001741 denotes XY body
T21219 364-369 PR_EXT:000006549 denotes DMRT7
T21220 413-420 GO:0001741 denotes XY body
T21221 454-459 PR_EXT:000006549 denotes Dmrt7
T21222 460-466 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T21223 467-472 CL_GO_EXT:cell denotes cells
T21224 508-513 CL_GO_EXT:cell denotes cells
T21225 522-529 GO:0001741 denotes XY body
T21226 588-597 GO:0000785 denotes chromatin
T21227 598-603 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marks
T21228 633-646 GO:0097617 denotes hybridization
T21229 663-667 PR_EXT:000030954 denotes RBMY
T21230 668-678 GO:0010467 denotes expression
T21231 728-735 GO:0001741 denotes XY body
T21232 743-752 GO:0000239 denotes pachytene
T21233 753-758 PR_EXT:000006549 denotes Dmrt7
T21234 759-765 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T21235 766-771 CL_GO_EXT:cell denotes cells