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PMC:1853120 / 35470-36040 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T18060 0-2 IN denotes In
T18061 33-39 VBD denotes staged
T18062 3-6 DT denotes the
T18063 17-28 NNS denotes experiments
T18064 7-16 VBG denotes preceding
T18065 28-30 , denotes ,
T18066 30-32 PRP denotes we
T18067 40-45 NNS denotes cells
T18068 46-51 VBN denotes based
T18069 52-54 IN denotes on
T18070 55-57 NN denotes XY
T18071 58-62 NN denotes body
T18072 63-78 NN denotes internalization
T18073 78-79 . denotes .
T18074 79-231 sentence denotes Because this process could be abnormal in the mutant cells, we also staged mutant cells by chromosome morphology using an antibody to SYCP3 (Figure 9).
T18075 80-87 IN denotes Because
T18076 107-109 VB denotes be
T18077 88-92 DT denotes this
T18078 93-100 NN denotes process
T18079 101-106 MD denotes could
T18080 148-154 VBD denotes staged
T18081 110-118 JJ denotes abnormal
T18082 119-121 IN denotes in
T18083 122-125 DT denotes the
T18084 133-138 NNS denotes cells
T18085 126-132 NN denotes mutant
T18086 138-140 , denotes ,
T18087 140-142 PRP denotes we
T18088 143-147 RB denotes also
T18089 155-161 NN denotes mutant
T18090 162-167 NNS denotes cells
T18091 168-170 IN denotes by
T18092 171-181 NN denotes chromosome
T18093 182-192 NN denotes morphology
T18094 193-198 VBG denotes using
T18095 199-201 DT denotes an
T18096 202-210 NN denotes antibody
T18097 211-213 IN denotes to
T18098 214-219 NN denotes SYCP3
T18099 220-221 -LRB- denotes (
T18100 221-227 NN denotes Figure
T18101 228-229 CD denotes 9
T18102 229-230 -RRB- denotes )
T18103 230-231 . denotes .
T18104 231-366 sentence denotes This independently identified Dmrt7 mutant diplotene cells lacking HP1β accumulation in the XY body, such as the example in Figure 9B.
T18105 232-236 DT denotes This
T18106 251-261 VBN denotes identified
T18107 237-250 RB denotes independently
T18108 262-267 NN denotes Dmrt7
T18109 268-274 NN denotes mutant
T18110 285-290 NNS denotes cells
T18111 275-284 NN denotes diplotene
T18112 291-298 VBG denotes lacking
T18113 299-303 NN denotes HP1β
T18114 304-316 NN denotes accumulation
T18115 317-319 IN denotes in
T18116 320-323 DT denotes the
T18117 327-331 NN denotes body
T18118 324-326 NN denotes XY
T18119 331-333 , denotes ,
T18120 333-337 JJ denotes such
T18121 338-340 IN denotes as
T18122 341-344 DT denotes the
T18123 345-352 NN denotes example
T18124 353-355 IN denotes in
T18125 356-362 NN denotes Figure
T18126 363-365 NN denotes 9B
T18127 365-366 . denotes .
T18128 366-570 sentence denotes From these results, we conclude that Dmrt7 mutant cells establish a normal XY body in mid-pachynema, but then have multiple epigenetic defects in the sex chromatin transition from pachynema to diplonema.
T18129 367-371 IN denotes From
T18130 390-398 VBP denotes conclude
T18131 372-377 DT denotes these
T18132 378-385 NNS denotes results
T18133 385-387 , denotes ,
T18134 387-389 PRP denotes we
T18135 399-403 IN denotes that
T18136 423-432 VBP denotes establish
T18137 404-409 NN denotes Dmrt7
T18138 417-422 NNS denotes cells
T18139 410-416 NN denotes mutant
T18140 433-434 DT denotes a
T18141 445-449 NN denotes body
T18142 435-441 JJ denotes normal
T18143 442-444 NN denotes XY
T18144 450-452 IN denotes in
T18145 453-466 NN denotes mid-pachynema
T18146 466-468 , denotes ,
T18147 468-471 CC denotes but
T18148 472-476 RB denotes then
T18149 477-481 VBP denotes have
T18150 482-490 JJ denotes multiple
T18151 502-509 NNS denotes defects
T18152 491-501 JJ denotes epigenetic
T18153 510-512 IN denotes in
T18154 513-516 DT denotes the
T18155 531-541 NN denotes transition
T18156 517-520 NN denotes sex
T18157 521-530 NN denotes chromatin
T18158 542-546 IN denotes from
T18159 547-556 NN denotes pachynema
T18160 557-559 IN denotes to
T18161 560-569 NN denotes diplonema
T18162 569-570 . denotes .
R4983 T18060 T18061 prep In,staged
R4984 T18062 T18063 det the,experiments
R4985 T18063 T18060 pobj experiments,In
R4986 T18064 T18063 amod preceding,experiments
R4987 T18065 T18061 punct ", ",staged
R4988 T18066 T18061 nsubj we,staged
R4989 T18067 T18061 dobj cells,staged
R4990 T18068 T18061 prep based,staged
R4991 T18069 T18068 prep on,based
R4992 T18070 T18071 compound XY,body
R4993 T18071 T18072 compound body,internalization
R4994 T18072 T18069 pobj internalization,on
R4995 T18073 T18061 punct .,staged
R4996 T18075 T18076 mark Because,be
R4997 T18076 T18080 advcl be,staged
R4998 T18077 T18078 det this,process
R4999 T18078 T18076 nsubj process,be
R5000 T18079 T18076 aux could,be
R5001 T18081 T18076 acomp abnormal,be
R5002 T18082 T18076 prep in,be
R5003 T18083 T18084 det the,cells
R5004 T18084 T18082 pobj cells,in
R5005 T18085 T18084 compound mutant,cells
R5006 T18086 T18080 punct ", ",staged
R5007 T18087 T18080 nsubj we,staged
R5008 T18088 T18080 advmod also,staged
R5009 T18089 T18090 compound mutant,cells
R5010 T18090 T18080 dobj cells,staged
R5011 T18091 T18080 prep by,staged
R5012 T18092 T18093 compound chromosome,morphology
R5013 T18093 T18091 pobj morphology,by
R5014 T18094 T18080 advcl using,staged
R5015 T18095 T18096 det an,antibody
R5016 T18096 T18094 dobj antibody,using
R5017 T18097 T18094 prep to,using
R5018 T18098 T18097 pobj SYCP3,to
R5019 T18099 T18100 punct (,Figure
R5020 T18100 T18080 parataxis Figure,staged
R5021 T18101 T18100 nummod 9,Figure
R5022 T18102 T18100 punct ),Figure
R5023 T18103 T18080 punct .,staged
R5024 T18105 T18106 nsubj This,identified
R5025 T18107 T18106 advmod independently,identified
R5026 T18108 T18109 compound Dmrt7,mutant
R5027 T18109 T18110 compound mutant,cells
R5028 T18110 T18106 dobj cells,identified
R5029 T18111 T18110 compound diplotene,cells
R5030 T18112 T18110 acl lacking,cells
R5031 T18113 T18114 compound HP1β,accumulation
R5032 T18114 T18112 dobj accumulation,lacking
R5033 T18115 T18112 prep in,lacking
R5034 T18116 T18117 det the,body
R5035 T18117 T18115 pobj body,in
R5036 T18118 T18117 compound XY,body
R5037 T18119 T18110 punct ", ",cells
R5038 T18120 T18121 amod such,as
R5039 T18121 T18110 prep as,cells
R5040 T18122 T18123 det the,example
R5041 T18123 T18121 pobj example,as
R5042 T18124 T18123 prep in,example
R5043 T18125 T18126 compound Figure,9B
R5044 T18126 T18124 pobj 9B,in
R5045 T18127 T18106 punct .,identified
R5046 T18129 T18130 prep From,conclude
R5047 T18131 T18132 det these,results
R5048 T18132 T18129 pobj results,From
R5049 T18133 T18130 punct ", ",conclude
R5050 T18134 T18130 nsubj we,conclude
R5051 T18135 T18136 mark that,establish
R5052 T18136 T18130 ccomp establish,conclude
R5053 T18137 T18138 compound Dmrt7,cells
R5054 T18138 T18136 nsubj cells,establish
R5055 T18139 T18138 compound mutant,cells
R5056 T18140 T18141 det a,body
R5057 T18141 T18136 dobj body,establish
R5058 T18142 T18141 amod normal,body
R5059 T18143 T18141 compound XY,body
R5060 T18144 T18136 prep in,establish
R5061 T18145 T18144 pobj mid-pachynema,in
R5062 T18146 T18136 punct ", ",establish
R5063 T18147 T18136 cc but,establish
R5064 T18148 T18149 advmod then,have
R5065 T18149 T18136 conj have,establish
R5066 T18150 T18151 amod multiple,defects
R5067 T18151 T18149 dobj defects,have
R5068 T18152 T18151 amod epigenetic,defects
R5069 T18153 T18149 prep in,have
R5070 T18154 T18155 det the,transition
R5071 T18155 T18153 pobj transition,in
R5072 T18156 T18155 compound sex,transition
R5073 T18157 T18155 compound chromatin,transition
R5074 T18158 T18155 prep from,transition
R5075 T18159 T18158 pobj pachynema,from
R5076 T18160 T18155 prep to,transition
R5077 T18161 T18160 pobj diplonema,to
R5078 T18162 T18130 punct .,conclude

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T17063 55-62 GO:0001741 denotes XY body
T17064 202-210 GO:0042571 denotes antibody
T17065 214-219 PR:000015865 denotes SYCP3
T17066 262-267 PR:000006549 denotes Dmrt7
T17067 275-284 GO:0000240 denotes diplotene
T17068 299-303 PR:000005082 denotes HP1β
T17069 324-331 GO:0001741 denotes XY body
T17070 404-409 PR:000006549 denotes Dmrt7
T17071 442-449 GO:0001741 denotes XY body
T17072 457-466 GO:0000239 denotes pachynema
T17073 517-530 GO:0001739 denotes sex chromatin
T17074 521-541 GO:0016568 denotes chromatin transition
T17075 547-556 GO:0000239 denotes pachynema
T17076 560-569 GO:0000240 denotes diplonema

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T17259 40-45 CL_GO_EXT:cell denotes cells
T17260 55-62 GO:0001741 denotes XY body
T17261 126-132 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T17262 133-138 CL_GO_EXT:cell denotes cells
T17263 155-161 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T17264 162-167 CL_GO_EXT:cell denotes cells
T17265 171-181 GO_SO_EXT:chromosome denotes chromosome
T17266 202-210 GO:0042571 denotes antibody
T17267 214-219 PR_EXT:000015865 denotes SYCP3
T17268 262-267 PR_EXT:000006549 denotes Dmrt7
T17269 268-274 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T17270 275-284 GO:0000240 denotes diplotene
T17271 285-290 CL_GO_EXT:cell denotes cells
T17272 299-303 PR_EXT:000005082 denotes HP1β
T17273 324-331 GO:0001741 denotes XY body
T17274 404-409 PR_EXT:000006549 denotes Dmrt7
T17275 410-416 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T17276 417-422 CL_GO_EXT:cell denotes cells
T17277 442-449 GO:0001741 denotes XY body
T17278 457-466 GO:0000239 denotes pachynema
T17279 491-501 SO_EXT:epigenetic_modification_entity_or_process denotes epigenetic
T17280 517-530 GO:0001739 denotes sex chromatin
T17281 521-541 GO:0016568 denotes chromatin transition
T17282 547-556 GO:0000239 denotes pachynema
T17283 560-569 GO:0000240 denotes diplonema