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Id Subject Object Predicate Lexical cue
T11839 363-370 NN denotes element
T11774 0-6 JJ denotes Normal
T11775 15-23 NN denotes Prophase
T11776 7-14 JJ denotes Meiotic
T11777 24-26 IN denotes in
T11778 27-32 NN denotes Dmrt7
T11779 33-39 NN denotes Mutant
T11780 45-50 NNS denotes Cells
T11781 40-44 NN denotes Germ
T11782 50-157 sentence denotes Defects in chromosome pairing, synapsis, or recombination can trigger pachytene arrest and apoptosis [46].
T11783 51-58 NNS denotes Defects
T11784 113-120 VB denotes trigger
T11785 59-61 IN denotes in
T11786 62-72 NN denotes chromosome
T11787 73-80 NN denotes pairing
T11788 80-82 , denotes ,
T11789 82-90 NN denotes synapsis
T11790 90-92 , denotes ,
T11791 92-94 CC denotes or
T11792 95-108 NN denotes recombination
T11793 109-112 MD denotes can
T11794 121-130 NN denotes pachytene
T11795 131-137 NN denotes arrest
T11796 138-141 CC denotes and
T11797 142-151 NN denotes apoptosis
T11798 152-153 -LRB- denotes [
T11799 153-155 CD denotes 46
T11800 155-156 -RRB- denotes ]
T11801 156-157 . denotes .
T11802 157-216 sentence denotes We therefore examined these events in Dmrt7 mutant testes.
T11803 158-160 PRP denotes We
T11804 171-179 VBD denotes examined
T11805 161-170 RB denotes therefore
T11806 180-185 DT denotes these
T11807 186-192 NNS denotes events
T11808 193-195 IN denotes in
T11809 196-201 NN denotes Dmrt7
T11810 202-208 NN denotes mutant
T11811 209-215 NNS denotes testes
T11812 215-216 . denotes .
T11813 216-434 sentence denotes To assess homolog synapsis, we used antibodies to SYCP1, a synaptonemal complex transverse element component, and SYCP3, a component of the axial element, which remains on the desynapsed axes during diplonema [47,48].
T11814 217-219 TO denotes To
T11815 220-226 VB denotes assess
T11816 248-252 VBD denotes used
T11817 227-234 NN denotes homolog
T11818 235-243 NN denotes synapsis
T11819 243-245 , denotes ,
T11820 245-247 PRP denotes we
T11821 253-263 NNS denotes antibodies
T11822 264-266 IN denotes to
T11823 267-272 NN denotes SYCP1
T11824 272-274 , denotes ,
T11825 274-275 DT denotes a
T11826 316-325 NN denotes component
T11827 276-288 JJ denotes synaptonemal
T11828 289-296 NN denotes complex
T11829 297-307 NN denotes transverse
T11830 308-315 NN denotes element
T11831 325-327 , denotes ,
T11832 327-330 CC denotes and
T11833 331-336 NN denotes SYCP3
T11834 336-338 , denotes ,
T11835 338-339 DT denotes a
T11836 340-349 NN denotes component
T11837 350-352 IN denotes of
T11838 353-356 DT denotes the
T11840 357-362 JJ denotes axial
T11841 370-372 , denotes ,
T11842 372-377 WDT denotes which
T11843 378-385 VBZ denotes remains
T11844 386-388 IN denotes on
T11845 389-392 DT denotes the
T11846 404-408 NNS denotes axes
T11847 393-403 VBN denotes desynapsed
T11848 409-415 IN denotes during
T11849 416-425 NN denotes diplonema
T11850 426-427 -LRB- denotes [
T11851 430-432 CD denotes 48
T11852 427-429 CD denotes 47
T11853 429-430 , denotes ,
T11854 432-433 -RRB- denotes ]
T11855 433-434 . denotes .
T11856 434-621 sentence denotes Formation of synaptonemal complexes in the mutant was indistinguishable from that in wild-type, as indicated by the proper accumulation of SYCP1 (unpublished data) and SYCP3 (Figure 5A).
T11857 435-444 NN denotes Formation
T11858 485-488 VBD denotes was
T11859 445-447 IN denotes of
T11860 448-460 JJ denotes synaptonemal
T11861 461-470 NNS denotes complexes
T11862 471-473 IN denotes in
T11863 474-477 DT denotes the
T11864 478-484 NN denotes mutant
T11865 489-506 JJ denotes indistinguishable
T11866 507-511 IN denotes from
T11867 512-516 DT denotes that
T11868 517-519 IN denotes in
T11869 520-524 JJ denotes wild
T11870 525-529 NN denotes type
T11871 524-525 HYPH denotes -
T11872 529-531 , denotes ,
T11873 531-533 IN denotes as
T11874 534-543 VBN denotes indicated
T11875 544-546 IN denotes by
T11876 547-550 DT denotes the
T11877 558-570 NN denotes accumulation
T11878 551-557 JJ denotes proper
T11879 571-573 IN denotes of
T11880 574-579 NN denotes SYCP1
T11881 580-581 -LRB- denotes (
T11882 593-597 NNS denotes data
T11883 581-592 JJ denotes unpublished
T11884 597-598 -RRB- denotes )
T11885 599-602 CC denotes and
T11886 603-608 NN denotes SYCP3
T11887 609-610 -LRB- denotes (
T11888 617-619 NN denotes 5A
T11889 610-616 NN denotes Figure
T11890 619-620 -RRB- denotes )
T11891 620-621 . denotes .
T11892 621-833 sentence denotes Likewise, the Dmrt7 mutant zygotene spermatocytes showed normal accumulation of the early recombination repair marker RAD51, suggesting that early meiotic recombination is not significantly affected (Figure 5B).
T11893 622-630 RB denotes Likewise
T11894 672-678 VBD denotes showed
T11895 630-632 , denotes ,
T11896 632-635 DT denotes the
T11897 658-671 NNS denotes spermatocytes
T11898 636-641 NN denotes Dmrt7
T11899 642-648 NN denotes mutant
T11900 649-657 NN denotes zygotene
T11901 679-685 JJ denotes normal
T11902 686-698 NN denotes accumulation
T11903 699-701 IN denotes of
T11904 702-705 DT denotes the
T11905 740-745 NN denotes RAD51
T11906 706-711 JJ denotes early
T11907 712-725 NN denotes recombination
T11908 726-732 NN denotes repair
T11909 733-739 NN denotes marker
T11910 745-747 , denotes ,
T11911 747-757 VBG denotes suggesting
T11912 758-762 IN denotes that
T11913 812-820 VBN denotes affected
T11914 763-768 JJ denotes early
T11915 777-790 NN denotes recombination
T11916 769-776 JJ denotes meiotic
T11917 791-793 VBZ denotes is
T11918 794-797 RB denotes not
T11919 798-811 RB denotes significantly
T11920 821-822 -LRB- denotes (
T11921 829-831 NN denotes 5B
T11922 822-828 NN denotes Figure
T11923 831-832 -RRB- denotes )
T11924 832-833 . denotes .
T11925 833-1010 sentence denotes Dmrt7 mutant spermatocytes exhibited the expected decline in the presence of RAD51 foci associated with the autosomal synaptonemal complexes (Figure 5B; unpublished data) [49].
T11926 834-839 NN denotes Dmrt7
T11927 840-846 NN denotes mutant
T11928 847-860 NNS denotes spermatocytes
T11929 861-870 VBD denotes exhibited
T11930 871-874 DT denotes the
T11931 884-891 NN denotes decline
T11932 875-883 VBN denotes expected
T11933 892-894 IN denotes in
T11934 895-898 DT denotes the
T11935 899-907 NN denotes presence
T11936 908-910 IN denotes of
T11937 911-916 NN denotes RAD51
T11938 917-921 NNS denotes foci
T11939 922-932 VBN denotes associated
T11940 933-937 IN denotes with
T11941 938-941 DT denotes the
T11942 965-974 NNS denotes complexes
T11943 942-951 JJ denotes autosomal
T11944 952-964 JJ denotes synaptonemal
T11945 975-976 -LRB- denotes (
T11946 999-1003 NNS denotes data
T11947 976-982 NN denotes Figure
T11948 983-985 NN denotes 5B
T11949 985-986 : denotes ;
T11950 987-998 JJ denotes unpublished
T11951 1003-1004 -RRB- denotes )
T11952 1005-1006 -LRB- denotes [
T11953 1006-1008 CD denotes 49
T11954 1008-1009 -RRB- denotes ]
T11955 1009-1010 . denotes .
T11956 1010-1141 sentence denotes The few surviving cells that progressed beyond pachynema also underwent apparently normal desynapsis during diplonema (Figure 5A).
T11957 1011-1014 DT denotes The
T11958 1029-1034 NNS denotes cells
T11959 1015-1018 JJ denotes few
T11960 1019-1028 VBG denotes surviving
T11961 1073-1082 VBD denotes underwent
T11962 1035-1039 WDT denotes that
T11963 1040-1050 VBD denotes progressed
T11964 1051-1057 IN denotes beyond
T11965 1058-1067 NN denotes pachynema
T11966 1068-1072 RB denotes also
T11967 1083-1093 RB denotes apparently
T11968 1094-1100 JJ denotes normal
T11969 1101-1111 NN denotes desynapsis
T11970 1112-1118 IN denotes during
T11971 1119-1128 NN denotes diplonema
T11972 1129-1130 -LRB- denotes (
T11973 1137-1139 NN denotes 5A
T11974 1130-1136 NN denotes Figure
T11975 1139-1140 -RRB- denotes )
T11976 1140-1141 . denotes .
T11977 1141-1299 sentence denotes From these results, we conclude that chromosomal pairing, synapsis, recombination, and desynapsis during prophase I in Dmrt7 mutant males are grossly normal.
T11978 1142-1146 IN denotes From
T11979 1165-1173 VBP denotes conclude
T11980 1147-1152 DT denotes these
T11981 1153-1160 NNS denotes results
T11982 1160-1162 , denotes ,
T11983 1162-1164 PRP denotes we
T11984 1174-1178 IN denotes that
T11985 1280-1283 VBP denotes are
T11986 1179-1190 JJ denotes chromosomal
T11987 1191-1198 NN denotes pairing
T11988 1198-1200 , denotes ,
T11989 1200-1208 NN denotes synapsis
T11990 1208-1210 , denotes ,
T11991 1210-1223 NN denotes recombination
T11992 1223-1225 , denotes ,
T11993 1225-1228 CC denotes and
T11994 1229-1239 NN denotes desynapsis
T11995 1240-1246 IN denotes during
T11996 1247-1255 NN denotes prophase
T11997 1256-1257 CD denotes I
T11998 1258-1260 IN denotes in
T11999 1261-1266 NN denotes Dmrt7
T12000 1267-1273 NN denotes mutant
T12001 1274-1279 NNS denotes males
T12002 1284-1291 RB denotes grossly
T12003 1292-1298 JJ denotes normal
T12004 1298-1299 . denotes .
T29623 1310-1316 JJ denotes Normal
T29624 1317-1325 NN denotes Synapsis
T29625 1326-1329 CC denotes and
T29626 1330-1343 NN denotes Recombination
T29627 1344-1346 IN denotes in
T29628 1347-1352 NN denotes Dmrt7
T29629 1353-1359 NN denotes Mutant
T29630 1365-1370 NNS denotes Cells
T29631 1360-1364 NN denotes Germ
T29632 1370-1507 sentence denotes (A) Testicular cells from Dmrt7 heterozygous (+/−) or homozygous (−/−) mutant mice were spread and stained with antibody to SYCP3 (red).
T29633 1371-1372 -LRB- denotes (
T29634 1372-1373 LS denotes A
T29635 1459-1465 VBN denotes spread
T29636 1373-1374 -RRB- denotes )
T29637 1375-1385 JJ denotes Testicular
T29638 1386-1391 NNS denotes cells
T29639 1392-1396 IN denotes from
T29640 1397-1402 NN denotes Dmrt7
T29641 1442-1448 NN denotes mutant
T29642 1403-1415 JJ denotes heterozygous
T29643 1416-1417 -LRB- denotes (
T29644 1419-1420 SYM denotes −
T29645 1417-1418 SYM denotes +
T29646 1418-1419 HYPH denotes /
T29647 1420-1421 -RRB- denotes )
T29648 1422-1424 CC denotes or
T29649 1425-1435 JJ denotes homozygous
T29650 1436-1437 -LRB- denotes (
T29651 1439-1440 SYM denotes −
T29652 1437-1438 SYM denotes −
T29653 1438-1439 HYPH denotes /
T29654 1440-1441 -RRB- denotes )
T29655 1449-1453 NNS denotes mice
T29656 1454-1458 VBD denotes were
T29657 1466-1469 CC denotes and
T29658 1470-1477 VBN denotes stained
T29659 1478-1482 IN denotes with
T29660 1483-1491 NN denotes antibody
T29661 1492-1494 IN denotes to
T29662 1495-1500 NN denotes SYCP3
T29663 1501-1502 -LRB- denotes (
T29664 1502-1505 JJ denotes red
T29665 1505-1506 -RRB- denotes )
T29666 1506-1507 . denotes .
T29667 1507-1609 sentence denotes The developmental stages of meiotic prophase based on SYCP3 organization are indicated in each panel.
T29668 1508-1511 DT denotes The
T29669 1526-1532 NNS denotes stages
T29670 1512-1525 JJ denotes developmental
T29671 1585-1594 VBN denotes indicated
T29672 1533-1535 IN denotes of
T29673 1536-1543 JJ denotes meiotic
T29674 1544-1552 NN denotes prophase
T29675 1553-1558 VBN denotes based
T29676 1559-1561 IN denotes on
T29677 1562-1567 NN denotes SYCP3
T29678 1568-1580 NN denotes organization
T29679 1581-1584 VBP denotes are
T29680 1595-1597 IN denotes in
T29681 1598-1602 DT denotes each
T29682 1603-1608 NN denotes panel
T29683 1608-1609 . denotes .
T29684 1609-1760 sentence denotes By pachynema, all autosomes are fully synapsed, and the XY bivalent is synapsed only at the pseudoautosomal region in both wild-type and mutant cells.
T29685 1610-1612 IN denotes By
T29686 1648-1656 VBN denotes synapsed
T29687 1613-1622 NN denotes pachynema
T29688 1622-1624 , denotes ,
T29689 1624-1627 DT denotes all
T29690 1628-1637 NNS denotes autosomes
T29691 1638-1641 VBP denotes are
T29692 1642-1647 RB denotes fully
T29693 1656-1658 , denotes ,
T29694 1658-1661 CC denotes and
T29695 1662-1665 DT denotes the
T29696 1666-1668 NN denotes XY
T29697 1681-1689 VBN denotes synapsed
T29698 1669-1677 JJ denotes bivalent
T29699 1678-1680 VBZ denotes is
T29700 1690-1694 RB denotes only
T29701 1695-1697 IN denotes at
T29702 1698-1701 DT denotes the
T29703 1718-1724 NN denotes region
T29704 1702-1717 JJ denotes pseudoautosomal
T29705 1725-1727 IN denotes in
T29706 1728-1732 CC denotes both
T29707 1738-1742 NN denotes type
T29708 1733-1737 JJ denotes wild
T29709 1737-1738 HYPH denotes -
T29710 1754-1759 NNS denotes cells
T29711 1743-1746 CC denotes and
T29712 1747-1753 NN denotes mutant
T29713 1759-1760 . denotes .
T29714 1760-1876 sentence denotes (B) Testicular cells in zygonema and pachynema spread and stained with antibodies to RAD51 (green) and SYCP3 (red).
T29715 1761-1762 -LRB- denotes (
T29716 1762-1763 LS denotes B
T29717 1776-1781 NNS denotes cells
T29718 1763-1764 -RRB- denotes )
T29719 1765-1775 JJ denotes Testicular
T29720 1782-1784 IN denotes in
T29721 1785-1793 NN denotes zygonema
T29722 1794-1797 CC denotes and
T29723 1798-1807 NN denotes pachynema
T29724 1808-1814 VBN denotes spread
T29725 1815-1818 CC denotes and
T29726 1819-1826 VBN denotes stained
T29727 1827-1831 IN denotes with
T29728 1832-1842 NNS denotes antibodies
T29729 1843-1845 IN denotes to
T29730 1846-1851 NN denotes RAD51
T29731 1852-1853 -LRB- denotes (
T29732 1853-1858 JJ denotes green
T29733 1858-1859 -RRB- denotes )
T29734 1860-1863 CC denotes and
T29735 1864-1869 NN denotes SYCP3
T29736 1870-1871 -LRB- denotes (
T29737 1871-1874 JJ denotes red
T29738 1874-1875 -RRB- denotes )
T29739 1875-1876 . denotes .
T29740 1876-1968 sentence denotes Size and distribution of RAD51 foci are similar between wild-type and mutant spermatocytes.
T29741 1877-1881 NN denotes Size
T29742 1913-1916 VBP denotes are
T29743 1882-1885 CC denotes and
T29744 1886-1898 NN denotes distribution
T29745 1899-1901 IN denotes of
T29746 1902-1907 NN denotes RAD51
T29747 1908-1912 NNS denotes foci
T29748 1917-1924 JJ denotes similar
T29749 1925-1932 IN denotes between
T29750 1933-1937 JJ denotes wild
T29751 1938-1942 NN denotes type
T29752 1937-1938 HYPH denotes -
T29753 1954-1967 NNS denotes spermatocytes
T29754 1943-1946 CC denotes and
T29755 1947-1953 NN denotes mutant
T29756 1967-1968 . denotes .
R8259 T29623 T29624 amod Normal,Synapsis
R8260 T29625 T29624 cc and,Synapsis
R8261 T29626 T29624 conj Recombination,Synapsis
R8262 T29627 T29624 prep in,Synapsis
R8263 T29628 T29629 compound Dmrt7,Mutant
R8264 T29629 T29630 compound Mutant,Cells
R8265 T29630 T29627 pobj Cells,in
R8266 T29631 T29630 compound Germ,Cells
R8267 T29633 T29634 punct (,A
R8268 T29634 T29635 meta A,spread
R8269 T29636 T29634 punct ),A
R8270 T29637 T29638 amod Testicular,cells
R8271 T29638 T29635 nsubjpass cells,spread
R8272 T29639 T29638 prep from,cells
R8273 T29640 T29641 nmod Dmrt7,mutant
R8274 T29641 T29655 compound mutant,mice
R8275 T29642 T29641 amod heterozygous,mutant
R8276 T29643 T29644 punct (,−
R8277 T29644 T29642 punct −,heterozygous
R8278 T29645 T29644 punct +,−
R8279 T29646 T29644 punct /,−
R8280 T29647 T29644 punct ),−
R8281 T29648 T29642 cc or,heterozygous
R8282 T29649 T29642 conj homozygous,heterozygous
R8283 T29650 T29651 punct (,−
R8284 T29651 T29649 punct −,homozygous
R8285 T29652 T29651 punct −,−
R8286 T29653 T29651 punct /,−
R8287 T29654 T29651 punct ),−
R8288 T29655 T29639 pobj mice,from
R8289 T29656 T29635 auxpass were,spread
R8290 T29657 T29635 cc and,spread
R8291 T29658 T29635 conj stained,spread
R8292 T29659 T29658 prep with,stained
R8293 T29660 T29659 pobj antibody,with
R8294 T29661 T29660 prep to,antibody
R8295 T29662 T29661 pobj SYCP3,to
R8296 T29663 T29664 punct (,red
R8297 T29664 T29658 parataxis red,stained
R8298 T29665 T29664 punct ),red
R8299 T29666 T29635 punct .,spread
R8300 T29668 T29669 det The,stages
R8301 T29669 T29671 nsubjpass stages,indicated
R8302 T29670 T29669 amod developmental,stages
R8303 T29672 T29669 prep of,stages
R8304 T29673 T29674 amod meiotic,prophase
R8305 T29674 T29672 pobj prophase,of
R8306 T29675 T29669 prep based,stages
R8307 T29676 T29675 prep on,based
R8308 T29677 T29678 compound SYCP3,organization
R8309 T29678 T29676 pobj organization,on
R8310 T29679 T29671 auxpass are,indicated
R8311 T29680 T29671 prep in,indicated
R8312 T29681 T29682 det each,panel
R8313 T29682 T29680 pobj panel,in
R8314 T29683 T29671 punct .,indicated
R8315 T29685 T29686 prep By,synapsed
R8316 T29687 T29685 pobj pachynema,By
R8317 T29688 T29686 punct ", ",synapsed
R8318 T29689 T29690 det all,autosomes
R8319 T29690 T29686 nsubjpass autosomes,synapsed
R8320 T29691 T29686 auxpass are,synapsed
R8321 T29692 T29686 advmod fully,synapsed
R8322 T29693 T29686 punct ", ",synapsed
R8323 T29694 T29686 cc and,synapsed
R8324 T29695 T29696 det the,XY
R8325 T29696 T29697 nsubjpass XY,synapsed
R8326 T29697 T29686 conj synapsed,synapsed
R8327 T29698 T29696 amod bivalent,XY
R8328 T29699 T29697 auxpass is,synapsed
R8329 T29700 T29701 advmod only,at
R8330 T29701 T29697 prep at,synapsed
R8331 T29702 T29703 det the,region
R8332 T29703 T29701 pobj region,at
R8333 T29704 T29703 amod pseudoautosomal,region
R8334 T29705 T29697 prep in,synapsed
R8335 T29706 T29707 preconj both,type
R8336 T29707 T29710 nmod type,cells
R8337 T29708 T29707 amod wild,type
R8338 T29709 T29707 punct -,type
R8339 T29710 T29705 pobj cells,in
R8340 T29711 T29707 cc and,type
R8341 T29712 T29707 conj mutant,type
R8342 T29713 T29686 punct .,synapsed
R8343 T29715 T29716 punct (,B
R8344 T29716 T29717 meta B,cells
R8345 T29718 T29716 punct ),B
R8346 T29719 T29717 amod Testicular,cells
R8347 T29720 T29717 prep in,cells
R8348 T29721 T29720 pobj zygonema,in
R8349 T29722 T29721 cc and,zygonema
R8350 T29723 T29721 conj pachynema,zygonema
R8351 T29724 T29717 acl spread,cells
R8352 T29725 T29724 cc and,spread
R8353 T29726 T29724 conj stained,spread
R8354 T29727 T29726 prep with,stained
R8355 T29728 T29727 pobj antibodies,with
R8356 T29729 T29728 prep to,antibodies
R8357 T29730 T29729 pobj RAD51,to
R8358 T29731 T29732 punct (,green
R8359 T29732 T29730 parataxis green,RAD51
R8360 T29733 T29732 punct ),green
R8361 T29734 T29730 cc and,RAD51
R8362 T29735 T29730 conj SYCP3,RAD51
R8363 T29736 T29737 punct (,red
R8364 T29737 T29735 parataxis red,SYCP3
R8365 T29738 T29737 punct ),red
R8366 T29739 T29717 punct .,cells
R8367 T29741 T29742 nsubj Size,are
R8368 T29743 T29741 cc and,Size
R8369 T29744 T29741 conj distribution,Size
R8370 T29745 T29741 prep of,Size
R8371 T29746 T29747 compound RAD51,foci
R8372 T29747 T29745 pobj foci,of
R8373 T29748 T29742 acomp similar,are
R8374 T29749 T29742 prep between,are
R8375 T29750 T29751 amod wild,type
R8376 T29751 T29753 nmod type,spermatocytes
R8377 T29752 T29751 punct -,type
R8378 T29753 T29749 pobj spermatocytes,between
R8379 T29754 T29751 cc and,type
R8380 T29755 T29751 conj mutant,type
R8381 T29756 T29742 punct .,are
R3159 T11774 T11775 amod Normal,Prophase
R3160 T11776 T11775 amod Meiotic,Prophase
R3161 T11777 T11775 prep in,Prophase
R3162 T11778 T11779 compound Dmrt7,Mutant
R3163 T11779 T11780 compound Mutant,Cells
R3164 T11780 T11777 pobj Cells,in
R3165 T11781 T11780 compound Germ,Cells
R3166 T11783 T11784 nsubj Defects,trigger
R3167 T11785 T11783 prep in,Defects
R3168 T11786 T11787 compound chromosome,pairing
R3169 T11787 T11785 pobj pairing,in
R3170 T11788 T11787 punct ", ",pairing
R3171 T11789 T11787 conj synapsis,pairing
R3172 T11790 T11789 punct ", ",synapsis
R3173 T11791 T11789 cc or,synapsis
R3174 T11792 T11789 conj recombination,synapsis
R3175 T11793 T11784 aux can,trigger
R3176 T11794 T11795 compound pachytene,arrest
R3177 T11795 T11784 dobj arrest,trigger
R3178 T11796 T11795 cc and,arrest
R3179 T11797 T11795 conj apoptosis,arrest
R3180 T11798 T11799 punct [,46
R3181 T11799 T11784 parataxis 46,trigger
R3182 T11800 T11799 punct ],46
R3183 T11801 T11784 punct .,trigger
R3184 T11803 T11804 nsubj We,examined
R3185 T11805 T11804 advmod therefore,examined
R3186 T11806 T11807 det these,events
R3187 T11807 T11804 dobj events,examined
R3188 T11808 T11804 prep in,examined
R3189 T11809 T11810 compound Dmrt7,mutant
R3190 T11810 T11811 compound mutant,testes
R3191 T11811 T11808 pobj testes,in
R3192 T11812 T11804 punct .,examined
R3193 T11814 T11815 aux To,assess
R3194 T11815 T11816 advcl assess,used
R3195 T11817 T11818 compound homolog,synapsis
R3196 T11818 T11815 dobj synapsis,assess
R3197 T11819 T11816 punct ", ",used
R3198 T11820 T11816 nsubj we,used
R3199 T11821 T11816 dobj antibodies,used
R3200 T11822 T11821 prep to,antibodies
R3201 T11823 T11822 pobj SYCP1,to
R3202 T11824 T11823 punct ", ",SYCP1
R3203 T11825 T11826 det a,component
R3204 T11826 T11823 appos component,SYCP1
R3205 T11827 T11826 amod synaptonemal,component
R3206 T11828 T11826 compound complex,component
R3207 T11829 T11826 compound transverse,component
R3208 T11830 T11826 compound element,component
R3209 T11831 T11821 punct ", ",antibodies
R3210 T11832 T11821 cc and,antibodies
R3211 T11833 T11821 conj SYCP3,antibodies
R3212 T11834 T11833 punct ", ",SYCP3
R3213 T11835 T11836 det a,component
R3214 T11836 T11833 appos component,SYCP3
R3215 T11837 T11836 prep of,component
R3216 T11838 T11839 det the,element
R3217 T11839 T11837 pobj element,of
R3218 T11840 T11839 amod axial,element
R3219 T11841 T11836 punct ", ",component
R3220 T11842 T11843 dep which,remains
R3221 T11843 T11836 relcl remains,component
R3222 T11844 T11843 prep on,remains
R3223 T11845 T11846 det the,axes
R3224 T11846 T11844 pobj axes,on
R3225 T11847 T11846 amod desynapsed,axes
R3226 T11848 T11843 prep during,remains
R3227 T11849 T11848 pobj diplonema,during
R3228 T11850 T11851 punct [,48
R3229 T11851 T11816 parataxis 48,used
R3230 T11852 T11851 nummod 47,48
R3231 T11853 T11851 punct ",",48
R3232 T11854 T11851 punct ],48
R3233 T11855 T11816 punct .,used
R3234 T11857 T11858 nsubj Formation,was
R3235 T11859 T11857 prep of,Formation
R3236 T11860 T11861 amod synaptonemal,complexes
R3237 T11861 T11859 pobj complexes,of
R3238 T11862 T11857 prep in,Formation
R3239 T11863 T11864 det the,mutant
R3240 T11864 T11862 pobj mutant,in
R3241 T11865 T11858 acomp indistinguishable,was
R3242 T11866 T11865 prep from,indistinguishable
R3243 T11867 T11866 pobj that,from
R3244 T11868 T11867 prep in,that
R3245 T11869 T11870 amod wild,type
R3246 T11870 T11868 pobj type,in
R3247 T11871 T11870 punct -,type
R3248 T11872 T11858 punct ", ",was
R3249 T11873 T11874 mark as,indicated
R3250 T11874 T11858 advcl indicated,was
R3251 T11875 T11874 prep by,indicated
R3252 T11876 T11877 det the,accumulation
R3253 T11877 T11875 pobj accumulation,by
R3254 T11878 T11877 amod proper,accumulation
R3255 T11879 T11877 prep of,accumulation
R3256 T11880 T11879 pobj SYCP1,of
R3257 T11881 T11882 punct (,data
R3258 T11882 T11880 parataxis data,SYCP1
R3259 T11883 T11882 amod unpublished,data
R3260 T11884 T11882 punct ),data
R3261 T11885 T11880 cc and,SYCP1
R3262 T11886 T11880 conj SYCP3,SYCP1
R3263 T11887 T11888 punct (,5A
R3264 T11888 T11858 parataxis 5A,was
R3265 T11889 T11888 compound Figure,5A
R3266 T11890 T11888 punct ),5A
R3267 T11891 T11858 punct .,was
R3268 T11893 T11894 advmod Likewise,showed
R3269 T11895 T11894 punct ", ",showed
R3270 T11896 T11897 det the,spermatocytes
R3271 T11897 T11894 nsubj spermatocytes,showed
R3272 T11898 T11899 compound Dmrt7,mutant
R3273 T11899 T11897 compound mutant,spermatocytes
R3274 T11900 T11897 compound zygotene,spermatocytes
R3275 T11901 T11902 amod normal,accumulation
R3276 T11902 T11894 dobj accumulation,showed
R3277 T11903 T11902 prep of,accumulation
R3278 T11904 T11905 det the,RAD51
R3279 T11905 T11903 pobj RAD51,of
R3280 T11906 T11905 amod early,RAD51
R3281 T11907 T11905 compound recombination,RAD51
R3282 T11908 T11909 compound repair,marker
R3283 T11909 T11905 compound marker,RAD51
R3284 T11910 T11894 punct ", ",showed
R3285 T11911 T11894 advcl suggesting,showed
R3286 T11912 T11913 mark that,affected
R3287 T11913 T11911 ccomp affected,suggesting
R3288 T11914 T11915 amod early,recombination
R3289 T11915 T11913 nsubjpass recombination,affected
R3290 T11916 T11915 amod meiotic,recombination
R3291 T11917 T11913 auxpass is,affected
R3292 T11918 T11913 neg not,affected
R3293 T11919 T11913 advmod significantly,affected
R3294 T11920 T11921 punct (,5B
R3295 T11921 T11894 parataxis 5B,showed
R3296 T11922 T11921 compound Figure,5B
R3297 T11923 T11921 punct ),5B
R3298 T11924 T11894 punct .,showed
R3299 T11926 T11927 compound Dmrt7,mutant
R3300 T11927 T11928 compound mutant,spermatocytes
R3301 T11928 T11929 nsubj spermatocytes,exhibited
R3302 T11930 T11931 det the,decline
R3303 T11931 T11929 dobj decline,exhibited
R3304 T11932 T11931 amod expected,decline
R3305 T11933 T11931 prep in,decline
R3306 T11934 T11935 det the,presence
R3307 T11935 T11933 pobj presence,in
R3308 T11936 T11935 prep of,presence
R3309 T11937 T11938 compound RAD51,foci
R3310 T11938 T11936 pobj foci,of
R3311 T11939 T11931 acl associated,decline
R3312 T11940 T11939 prep with,associated
R3313 T11941 T11942 det the,complexes
R3314 T11942 T11940 pobj complexes,with
R3315 T11943 T11942 amod autosomal,complexes
R3316 T11944 T11942 amod synaptonemal,complexes
R3317 T11945 T11946 punct (,data
R3318 T11946 T11929 parataxis data,exhibited
R3319 T11947 T11948 compound Figure,5B
R3320 T11948 T11946 dep 5B,data
R3321 T11949 T11946 punct ;,data
R3322 T11950 T11946 amod unpublished,data
R3323 T11951 T11946 punct ),data
R3324 T11952 T11953 punct [,49
R3325 T11953 T11929 parataxis 49,exhibited
R3326 T11954 T11953 punct ],49
R3327 T11955 T11929 punct .,exhibited
R3328 T11957 T11958 det The,cells
R3329 T11958 T11961 nsubj cells,underwent
R3330 T11959 T11958 amod few,cells
R3331 T11960 T11958 amod surviving,cells
R3332 T11962 T11963 dep that,progressed
R3333 T11963 T11958 relcl progressed,cells
R3334 T11964 T11963 prep beyond,progressed
R3335 T11965 T11964 pobj pachynema,beyond
R3336 T11966 T11961 advmod also,underwent
R3337 T11967 T11968 advmod apparently,normal
R3338 T11968 T11969 amod normal,desynapsis
R3339 T11969 T11961 dobj desynapsis,underwent
R3340 T11970 T11961 prep during,underwent
R3341 T11971 T11970 pobj diplonema,during
R3342 T11972 T11973 punct (,5A
R3343 T11973 T11961 parataxis 5A,underwent
R3344 T11974 T11973 compound Figure,5A
R3345 T11975 T11973 punct ),5A
R3346 T11976 T11961 punct .,underwent
R3347 T11978 T11979 prep From,conclude
R3348 T11980 T11981 det these,results
R3349 T11981 T11978 pobj results,From
R3350 T11982 T11979 punct ", ",conclude
R3351 T11983 T11979 nsubj we,conclude
R3352 T11984 T11985 mark that,are
R3353 T11985 T11979 ccomp are,conclude
R3354 T11986 T11987 amod chromosomal,pairing
R3355 T11987 T11985 nsubj pairing,are
R3356 T11988 T11987 punct ", ",pairing
R3357 T11989 T11987 conj synapsis,pairing
R3358 T11990 T11989 punct ", ",synapsis
R3359 T11991 T11989 conj recombination,synapsis
R3360 T11992 T11991 punct ", ",recombination
R3361 T11993 T11991 cc and,recombination
R3362 T11994 T11991 conj desynapsis,recombination
R3363 T11995 T11987 prep during,pairing
R3364 T11996 T11995 pobj prophase,during
R3365 T11997 T11996 nummod I,prophase
R3366 T11998 T11987 prep in,pairing
R3367 T11999 T12000 compound Dmrt7,mutant
R3368 T12000 T12001 compound mutant,males
R3369 T12001 T11998 pobj males,in
R3370 T12002 T12003 advmod grossly,normal
R3371 T12003 T11985 acomp normal,are
R3372 T12004 T11979 punct .,conclude

2_test

Id Subject Object Predicate Lexical cue
17447844-10973068-85805837 153-155 10973068 denotes 46
17447844-3552678-85805838 427-429 3552678 denotes 47
17447844-8289794-85805839 430-432 8289794 denotes 48
17447844-9443891-85805840 1006-1008 9443891 denotes 49
T43439 153-155 10973068 denotes 46
T45648 427-429 3552678 denotes 47
T6109 430-432 8289794 denotes 48
T33109 1006-1008 9443891 denotes 49

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T11673 7-14 GO:0007126 denotes Meiotic
T11674 15-23 GO:0051324 denotes Prophase
T11675 27-32 PR:000006549 denotes Dmrt7
T11676 40-50 CL:0000586 denotes Germ Cells
T11677 62-80 GO:0007129 denotes chromosome pairing
T11678 82-90 GO:0007129 denotes synapsis
T11679 121-130 GO:0000239 denotes pachytene
T11680 142-151 GO:0006915 denotes apoptosis
T11681 196-201 PR:000006549 denotes Dmrt7
T11682 209-215 UBERON:0000473 denotes testes
T11683 235-243 GO:0007129 denotes synapsis
T11684 253-263 GO:0042571 denotes antibodies
T11685 267-272 PR:000015862 denotes SYCP1
T11686 276-296 GO:0000795 denotes synaptonemal complex
T11687 297-315 GO:0000802 denotes transverse element
T11688 331-336 PR:000015865 denotes SYCP3
T11689 357-370 GO:0000800 denotes axial element
T11690 395-403 GO:0007129 denotes synapsed
T11691 416-425 GO:0000240 denotes diplonema
T11692 435-470 GO:0007130 denotes Formation of synaptonemal complexes
T11693 448-470 GO:0000795 denotes synaptonemal complexes
T11694 574-579 PR:000015862 denotes SYCP1
T11695 603-608 PR:000015865 denotes SYCP3
T11696 636-641 PR:000006549 denotes Dmrt7
T11697 649-657 GO:0000238 denotes zygotene
T11698 658-671 CL:0000017 denotes spermatocytes
T11699 712-732 GO:0000725 denotes recombination repair
T11700 740-745 PR:000013672 denotes RAD51
T11701 769-776 GO:0007126 denotes meiotic
T11702 834-839 PR:000006549 denotes Dmrt7
T11703 847-860 CL:0000017 denotes spermatocytes
T11704 911-916 PR:000013672 denotes RAD51
T11705 942-951 GO:0030849 denotes autosomal
T11706 952-974 GO:0000795 denotes synaptonemal complexes
T11707 1058-1067 GO:0000239 denotes pachynema
T11708 1103-1111 GO:0007129 denotes synapsis
T11709 1119-1128 GO:0000240 denotes diplonema
T11710 1179-1198 GO:0007129 denotes chromosomal pairing
T11711 1200-1208 GO:0007129 denotes synapsis
T11712 1231-1239 GO:0007129 denotes synapsis
T11713 1247-1257 GO:0007128 denotes prophase I
T11714 1261-1266 PR:000006549 denotes Dmrt7
T29562 1317-1325 GO:0007129 denotes Synapsis
T29563 1347-1352 PR:000006549 denotes Dmrt7
T29564 1360-1370 CL:0000586 denotes Germ Cells
T29565 1375-1385 UBERON:0000473 denotes Testicular
T29566 1397-1402 PR:000006549 denotes Dmrt7
T29567 1449-1453 NCBITaxon:10088 denotes mice
T29568 1483-1491 GO:0042571 denotes antibody
T29569 1495-1500 PR:000015865 denotes SYCP3
T29570 1536-1543 GO:0007126 denotes meiotic
T29571 1544-1552 GO:0051324 denotes prophase
T29572 1562-1567 PR:000015865 denotes SYCP3
T29573 1613-1622 GO:0000239 denotes pachynema
T29574 1628-1637 GO:0030849 denotes autosomes
T29575 1648-1656 GO:0007129 denotes synapsed
T29576 1681-1689 GO:0007129 denotes synapsed
T29577 1765-1775 UBERON:0000473 denotes Testicular
T29578 1785-1793 GO:0000238 denotes zygonema
T29579 1798-1807 GO:0000239 denotes pachynema
T29580 1832-1842 GO:0042571 denotes antibodies
T29581 1846-1851 PR:000013672 denotes RAD51
T29582 1864-1869 PR:000015865 denotes SYCP3
T29583 1902-1907 PR:000013672 denotes RAD51
T29584 1954-1967 CL:0000017 denotes spermatocytes

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T11747 649-657 GO:0000238 denotes zygotene
T11748 658-671 CL:0000017 denotes spermatocytes
T11715 7-14 GO:0007126 denotes Meiotic
T11716 15-23 GO:0051324 denotes Prophase
T11717 27-32 PR_EXT:000006549 denotes Dmrt7
T11718 33-39 SO_EXT:sequence_altered_entity_or_alteration_process denotes Mutant
T11719 40-50 CL:0000586 denotes Germ Cells
T11720 45-50 CL_GO_EXT:cell denotes Cells
T11721 62-72 GO_SO_EXT:chromosome denotes chromosome
T11722 62-80 GO:0007129 denotes chromosome pairing
T11723 82-90 GO:0007129 denotes synapsis
T11724 95-108 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T11725 121-130 GO:0000239 denotes pachytene
T11726 142-151 GO:0006915 denotes apoptosis
T11727 196-201 PR_EXT:000006549 denotes Dmrt7
T11728 202-208 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T11729 209-215 UBERON:0000473 denotes testes
T11730 235-243 GO:0007129 denotes synapsis
T11731 253-263 GO:0042571 denotes antibodies
T11732 267-272 PR_EXT:000015862 denotes SYCP1
T11733 276-296 GO:0000795 denotes synaptonemal complex
T11734 297-315 GO:0000802 denotes transverse element
T11735 331-336 PR_EXT:000015865 denotes SYCP3
T11736 357-370 GO:0000800 denotes axial element
T11737 395-403 GO:0007129 denotes synapsed
T11738 416-425 GO:0000240 denotes diplonema
T11739 435-470 GO:0007130 denotes Formation of synaptonemal complexes
T11740 448-470 GO:0000795 denotes synaptonemal complexes
T11741 478-484 SO_EXT:sequence_altered_entity denotes mutant
T11742 520-529 SO_EXT:wild_type_entity_or_quality denotes wild-type
T11743 574-579 PR_EXT:000015862 denotes SYCP1
T11744 603-608 PR_EXT:000015865 denotes SYCP3
T11745 636-641 PR_EXT:000006549 denotes Dmrt7
T11746 642-648 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T11749 712-725 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T11750 712-732 GO:0000725 denotes recombination repair
T11751 733-739 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T11752 740-745 PR_EXT:000013672 denotes RAD51
T11753 769-776 GO:0007126 denotes meiotic
T11754 777-790 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T11755 834-839 PR_EXT:000006549 denotes Dmrt7
T11756 840-846 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T11757 847-860 CL:0000017 denotes spermatocytes
T11758 911-916 PR_EXT:000013672 denotes RAD51
T11759 942-951 GO:0030849 denotes autosomal
T11760 952-974 GO:0000795 denotes synaptonemal complexes
T11761 1029-1034 CL_GO_EXT:cell denotes cells
T11762 1058-1067 GO:0000239 denotes pachynema
T11763 1103-1111 GO:0007129 denotes synapsis
T11764 1119-1128 GO:0000240 denotes diplonema
T11765 1179-1190 GO_SO_EXT:chromosome denotes chromosomal
T11766 1179-1198 GO:0007129 denotes chromosomal pairing
T11767 1200-1208 GO:0007129 denotes synapsis
T11768 1210-1223 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T11769 1231-1239 GO:0007129 denotes synapsis
T11770 1247-1257 GO:0007128 denotes prophase I
T11771 1261-1266 PR_EXT:000006549 denotes Dmrt7
T11772 1267-1273 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T11773 1274-1279 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes males
T29585 1317-1325 GO:0007129 denotes Synapsis
T29586 1330-1343 GO_SO_EXT:sequence_rearrangement_process denotes Recombination
T29587 1347-1352 PR_EXT:000006549 denotes Dmrt7
T29588 1353-1359 SO_EXT:sequence_altered_entity_or_alteration_process denotes Mutant
T29589 1360-1370 CL:0000586 denotes Germ Cells
T29590 1365-1370 CL_GO_EXT:cell denotes Cells
T29591 1375-1385 UBERON:0000473 denotes Testicular
T29592 1386-1391 CL_GO_EXT:cell denotes cells
T29593 1397-1402 PR_EXT:000006549 denotes Dmrt7
T29594 1417-1418 SO_EXT:normal_or_wild_type_or_present denotes +
T29595 1419-1420 SO_EXT:sequence_nullness_or_absence denotes −
T29596 1437-1438 SO_EXT:sequence_nullness_or_absence denotes −
T29597 1439-1440 SO_EXT:sequence_nullness_or_absence denotes −
T29598 1442-1448 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T29599 1449-1453 NCBITaxon:10088 denotes mice
T29600 1483-1491 GO:0042571 denotes antibody
T29601 1495-1500 PR_EXT:000015865 denotes SYCP3
T29602 1536-1543 GO:0007126 denotes meiotic
T29603 1544-1552 GO:0051324 denotes prophase
T29604 1562-1567 PR_EXT:000015865 denotes SYCP3
T29605 1613-1622 GO:0000239 denotes pachynema
T29606 1628-1637 GO:0030849 denotes autosomes
T29607 1648-1656 GO:0007129 denotes synapsed
T29608 1681-1689 GO:0007129 denotes synapsed
T29609 1733-1742 SO_EXT:wild_type_entity_or_quality denotes wild-type
T29610 1747-1753 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T29611 1754-1759 CL_GO_EXT:cell denotes cells
T29612 1765-1775 UBERON:0000473 denotes Testicular
T29613 1776-1781 CL_GO_EXT:cell denotes cells
T29614 1785-1793 GO:0000238 denotes zygonema
T29615 1798-1807 GO:0000239 denotes pachynema
T29616 1832-1842 GO:0042571 denotes antibodies
T29617 1846-1851 PR_EXT:000013672 denotes RAD51
T29618 1864-1869 PR_EXT:000015865 denotes SYCP3
T29619 1902-1907 PR_EXT:000013672 denotes RAD51
T29620 1933-1942 SO_EXT:wild_type_entity_or_quality denotes wild-type
T29621 1947-1953 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T29622 1954-1967 CL:0000017 denotes spermatocytes