C1 C2 C3 C4 C5 C6 E. coli Sequence Fulla Fulla Reducedb Reducedb Reduced & Alignedc Reduced & Alignedc Indep. Species No Yes No Yes No Yes Rank Gene log(q) Gene log(q) Gene log(q) Gene log(q) Gene log(q) Gene log(q) 1 yibI -4.65 cdd -9.28 mtlA -5.14 mtlA -9.76 mtlA -7.66 mtlA -12.15 2 yqcE -2.86 glpT -7.21 ygcW -2.89 cdd -9.60 yjcB -4.55 glpA -9.19 3 b1904 -2.61 mglB -6.01 yjcB -2.62 glpA -8.31 gcd -3.99 cdd -9.16 4 fucA -2.51 yibI -5.26 yjiY -2.60 mglB -6.53 b2146 -3.97 mglB -7.60 5 deaD -2.51 yjiY -4.57 b2146 -2.53 gapA -5.21 fucA -3.93 udp -6.26 6 yjiY -2.42 hemC -4.38 fucA -2.51 udp -5.17 ygcW -3.42 gapA -6.02 7 cdd -2.29 deaD -4.35 deaD -2.47 yjiY -4.79 flhD -3.03 yjcB -5.09 8 yeaA -2.22 ysgA -4.33 cdd -2.31 cyaA -4.70 gapA -3.03 cyaA -5.04 9 yhcR -2.06 yhcR -3.99 gapA -2.22 deaD -4.37 ycdZ -3.01 malE -4.83 10 ycdZ -1.96 yqcE -3.56 qseA -2.03 malE -4.29 udp -2.78 ycdZ -4.69 11 b2736 -1.87 adhE -3.47 ycdZ -1.98 ygcW -3.63 b2248 -2.76 adhE -4.56 12 uxaC -1.81 ycdZ -3.45 mglB -1.90 adhE -3.58 glpA -2.76 b2146 -4.53 13 ysgA -1.77 yeaA -3.44 udp -1.86 ycdZ -3.52 mglB -2.73 fucA -4.46 14 glpT -1.75 mlc -3.37 uxaC -1.85 mlc -3.48 qseA -2.68 pckA -4.09 15 mglB -1.63 b1904 -3.31 glpA -1.84 fucA -3.32 pckA -2.36 aer -3.97 16 pckA -1.39 fucA -3.23 pckA -1.45 yjcB -3.32 adhE -2.14 ygcW -3.78 17 serA -1.23 b2736 -3.18 malE -1.36 pckA -3.23 aer -2.13 gcd -3.67 18 aer -1.23 pckA -3.17 aer -1.32 aer -3.17 cdd -2.10 deaD -3.65 19 adhE -1.22 aer -3.08 serA -1.32 qseA -3.07 deaD -2.04 serA -3.62 20 mlc -1.01 yjeG -3.05 adhE -1.28 uxaC -3.07 uxaC -2.02 mlc -3.62 # Diffs from C6 10 11 3 3 4 0