Table 3  Comparison of the HSE- and CN measures for various proteins.
Residues  Measure  < 7 Å RMSD  < 6 Å RMSD  < 5 Å RMSD  < 4 Å RMSD  < 3 Å RMSD  < 2 Å RMSD  lowest RMSD  lowest energy
Human Endothelin (1EDN)
21  CN  100  100  98  60  18  0   2.09   0.00
HSE  100  100  100  93  65  37   0.88   0.00
Tryptophan Zipper 1(1LE0)
13  CN  100  100  100  100  100  22   1.38   0.00
HSE  100  100  100  100  100  67   0.95   0.00
Third Zinc Finger (1SRK)
35  CN  60  42  17  (1SRK) 1  0  0   3.52   0.00
HSE  56  33  13  5  0  0   3.02   0.33
Mu-Conotoxin GIIA (1TCH)
23  CN  100  100  97  63  23  5   1.58   0.00
HSE  100  100  100  97  61  38   0.91   0.00
Pandinus Toxin (2PTA)
35  CN  59  32  14  3  0  0   3.17   0.00
HSE  58  44  17  11  2  0   2.66   0.33