All algorithms and figures were implemented with original code developed using the programming environment MATLAB 7, Mathworks Inc. The resulting toolbox is and is made freely available at the GeneChaos resource [22] with no restrictions to use or modification. To assist in understanding the proposed algorithms, a function was included that produces the figures presented in this manuscript, e.g. paper_fig(1) will produce Figure 1, etc. This function therefore also serves as a tutorial to the usage and interplay of the remaining functions.