Numerous computational tools have been developed for this task. Natually, evaluation of these tools is becoming vital in this area. Recently, Tompa et al. [1] report the results of one such assessment. In this assessment, some popular tools are tested on datasets of four species: human, mouse, fly and yeast. Each dataset contains a set of sequences planted with binding sites of one transcription factor. The binding sites are provided in the TRANSFAC database [2]. Details of the datasets are explained in [1].