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PMC:1440874 / 54001-55561 JSONTXT

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Id Subject Object Predicate Lexical cue
T12292 0-20 NN denotes Immunohistochemistry
T12293 20-22 , denotes ,
T12294 22-24 FW denotes in
T12295 25-29 FW denotes situ
T12296 30-43 NN denotes hybridisation
T12297 43-45 , denotes ,
T12298 45-48 CC denotes and
T12299 49-54 NN denotes TUNEL
T12300 55-60 NN denotes assay
T12301 60-61 . denotes .
T12302 61-185 sentence denotes 7.5 dpc decidual swellings were dissected away from maternal tissue and fixed in 4% paraformaldehyde/PBS overnight at 4 °C.
T12303 62-65 CD denotes 7.5
T12304 66-69 NN denotes dpc
T12305 79-88 NNS denotes swellings
T12306 70-78 JJ denotes decidual
T12307 94-103 VBN denotes dissected
T12308 89-93 VBD denotes were
T12309 104-108 RB denotes away
T12310 109-113 IN denotes from
T12311 114-122 JJ denotes maternal
T12312 123-129 NN denotes tissue
T12313 130-133 CC denotes and
T12314 134-139 VBN denotes fixed
T12315 140-142 IN denotes in
T12316 143-144 CD denotes 4
T12317 144-145 NN denotes %
T12318 146-162 NN denotes paraformaldehyde
T12319 162-163 HYPH denotes /
T12320 163-166 NN denotes PBS
T12321 167-176 RB denotes overnight
T12322 177-179 IN denotes at
T12323 180-181 CD denotes 4
T12324 182-184 NN denotes °C
T12325 184-185 . denotes .
T12326 185-334 sentence denotes After embryos were washed thoroughly in PBS, they were dehydrated through an ethanol series and xylene, embedded in paraffin, and sectioned at 5 μm.
T12327 186-191 IN denotes After
T12328 205-211 VBN denotes washed
T12329 192-199 NNS denotes embryos
T12330 200-204 VBD denotes were
T12331 241-251 VBN denotes dehydrated
T12332 212-222 RB denotes thoroughly
T12333 223-225 IN denotes in
T12334 226-229 NN denotes PBS
T12335 229-231 , denotes ,
T12336 231-235 PRP denotes they
T12337 236-240 VBD denotes were
T12338 252-259 IN denotes through
T12339 260-262 DT denotes an
T12340 271-277 NNS denotes series
T12341 263-270 NN denotes ethanol
T12342 278-281 CC denotes and
T12343 282-288 NN denotes xylene
T12344 288-290 , denotes ,
T12345 290-298 VBN denotes embedded
T12346 299-301 IN denotes in
T12347 302-310 NN denotes paraffin
T12348 310-312 , denotes ,
T12349 312-315 CC denotes and
T12350 316-325 VBN denotes sectioned
T12351 326-328 IN denotes at
T12352 329-330 CD denotes 5
T12353 331-333 NNS denotes μm
T12354 333-334 . denotes .
T12355 334-525 sentence denotes Sections were processed for immunohistochemistry using the ABC Staining System (Santa Cruz Biotechnology, Santa Cruz, California, United States) according to the manufacturer's instructions.
T12356 335-343 NNS denotes Sections
T12357 349-358 VBN denotes processed
T12358 344-348 VBD denotes were
T12359 359-362 IN denotes for
T12360 363-383 NN denotes immunohistochemistry
T12361 384-389 VBG denotes using
T12362 390-393 DT denotes the
T12363 407-413 NNP denotes System
T12364 394-397 NNP denotes ABC
T12365 398-406 NNP denotes Staining
T12366 414-415 -LRB- denotes (
T12367 426-439 NNP denotes Biotechnology
T12368 415-420 NNP denotes Santa
T12369 421-425 NNP denotes Cruz
T12370 439-441 , denotes ,
T12371 441-446 NNP denotes Santa
T12372 447-451 NNP denotes Cruz
T12373 451-453 , denotes ,
T12374 453-463 NNP denotes California
T12375 463-465 , denotes ,
T12376 465-471 NNP denotes United
T12377 472-478 NNP denotes States
T12378 478-479 -RRB- denotes )
T12379 480-489 VBG denotes according
T12380 490-492 IN denotes to
T12381 493-496 DT denotes the
T12382 497-509 NN denotes manufacturer
T12383 512-524 NNS denotes instructions
T12384 509-511 POS denotes 's
T12385 524-525 . denotes .
T12386 525-823 sentence denotes Sections were stained with rabbit polyclonal antibodies against ATRX (H-300, Santa Cruz Biotechnology), Placental lactogen-I (AB1288, Chemicon International, Temecula, California, United States) and phospho (Ser10)-histone H3 (06–570, Upstate Biotechnology, Waltham, Massachusetts, United States).
T12387 526-534 NNS denotes Sections
T12388 540-547 VBN denotes stained
T12389 535-539 VBD denotes were
T12390 548-552 IN denotes with
T12391 553-559 NN denotes rabbit
T12392 571-581 NNS denotes antibodies
T12393 560-570 JJ denotes polyclonal
T12394 582-589 IN denotes against
T12395 590-594 NN denotes ATRX
T12396 595-596 -LRB- denotes (
T12397 596-597 NN denotes H
T12398 597-598 HYPH denotes -
T12399 598-601 CD denotes 300
T12400 601-603 , denotes ,
T12401 603-608 NNP denotes Santa
T12402 609-613 NNP denotes Cruz
T12403 614-627 NNP denotes Biotechnology
T12404 627-628 -RRB- denotes )
T12405 628-630 , denotes ,
T12406 630-639 JJ denotes Placental
T12407 649-650 NN denotes I
T12408 640-648 NN denotes lactogen
T12409 648-649 HYPH denotes -
T12410 651-652 -LRB- denotes (
T12411 652-658 NN denotes AB1288
T12412 658-660 , denotes ,
T12413 660-668 NNP denotes Chemicon
T12414 669-682 NNP denotes International
T12415 682-684 , denotes ,
T12416 684-692 NNP denotes Temecula
T12417 692-694 , denotes ,
T12418 694-704 NNP denotes California
T12419 704-706 , denotes ,
T12420 706-712 NNP denotes United
T12421 713-719 NNP denotes States
T12422 719-720 -RRB- denotes )
T12423 721-724 CC denotes and
T12424 725-732 NN denotes phospho
T12425 741-748 NN denotes histone
T12426 733-734 -LRB- denotes (
T12427 734-739 NN denotes Ser10
T12428 739-740 -RRB- denotes )
T12429 740-741 HYPH denotes -
T12430 749-751 NN denotes H3
T12431 752-753 -LRB- denotes (
T12432 756-759 CD denotes 570
T12433 753-755 CD denotes 06
T12434 755-756 HYPH denotes –
T12435 759-761 , denotes ,
T12436 761-768 NNP denotes Upstate
T12437 769-782 NNP denotes Biotechnology
T12438 782-784 , denotes ,
T12439 784-791 NNP denotes Waltham
T12440 791-793 , denotes ,
T12441 793-806 NNP denotes Massachusetts
T12442 806-808 , denotes ,
T12443 808-814 NNP denotes United
T12444 815-821 NNP denotes States
T12445 821-822 -RRB- denotes )
T12446 822-823 . denotes .
T12447 823-892 sentence denotes Where appropriate, adjacent sections were stained with haematoxylin.
T12448 824-829 WRB denotes Where
T12449 830-841 JJ denotes appropriate
T12450 866-873 VBN denotes stained
T12451 841-843 , denotes ,
T12452 843-851 JJ denotes adjacent
T12453 852-860 NNS denotes sections
T12454 861-865 VBD denotes were
T12455 874-878 IN denotes with
T12456 879-891 NN denotes haematoxylin
T12457 891-892 . denotes .
T12458 892-1051 sentence denotes In some cases, adjacent sections were also analysed to detect apoptotic cells by TUNEL using the in situ cell death detection kit (Roche, Basel, Switzerland).
T12459 893-895 IN denotes In
T12460 936-944 VBN denotes analysed
T12461 896-900 DT denotes some
T12462 901-906 NNS denotes cases
T12463 906-908 , denotes ,
T12464 908-916 JJ denotes adjacent
T12465 917-925 NNS denotes sections
T12466 926-930 VBD denotes were
T12467 931-935 RB denotes also
T12468 945-947 TO denotes to
T12469 948-954 VB denotes detect
T12470 955-964 JJ denotes apoptotic
T12471 965-970 NNS denotes cells
T12472 971-973 IN denotes by
T12473 974-979 NN denotes TUNEL
T12474 980-985 VBG denotes using
T12475 986-989 DT denotes the
T12476 1019-1022 NN denotes kit
T12477 990-992 FW denotes in
T12478 993-997 FW denotes situ
T12479 998-1002 NN denotes cell
T12480 1003-1008 NN denotes death
T12481 1009-1018 NN denotes detection
T12482 1023-1024 -LRB- denotes (
T12483 1024-1029 NNP denotes Roche
T12484 1029-1031 , denotes ,
T12485 1031-1036 NNP denotes Basel
T12486 1036-1038 , denotes ,
T12487 1038-1049 NNP denotes Switzerland
T12488 1049-1050 -RRB- denotes )
T12489 1050-1051 . denotes .
T12490 1051-1229 sentence denotes After labelling, these slides were mounted in Vectashield containing DAPI (Vector Laboratories, Burlingame, California, United States) and visualised by fluorescence microscopy.
T12491 1052-1057 IN denotes After
T12492 1087-1094 VBN denotes mounted
T12493 1058-1067 NN denotes labelling
T12494 1067-1069 , denotes ,
T12495 1069-1074 DT denotes these
T12496 1075-1081 NNS denotes slides
T12497 1082-1086 VBD denotes were
T12498 1095-1097 IN denotes in
T12499 1098-1109 NNP denotes Vectashield
T12500 1110-1120 VBG denotes containing
T12501 1121-1125 NN denotes DAPI
T12502 1126-1127 -LRB- denotes (
T12503 1134-1146 NNP denotes Laboratories
T12504 1127-1133 NNP denotes Vector
T12505 1146-1148 , denotes ,
T12506 1148-1158 NNP denotes Burlingame
T12507 1158-1160 , denotes ,
T12508 1160-1170 NNP denotes California
T12509 1170-1172 , denotes ,
T12510 1172-1178 NNP denotes United
T12511 1179-1185 NNP denotes States
T12512 1185-1186 -RRB- denotes )
T12513 1187-1190 CC denotes and
T12514 1191-1201 VBN denotes visualised
T12515 1202-1204 IN denotes by
T12516 1205-1217 NN denotes fluorescence
T12517 1218-1228 NN denotes microscopy
T12518 1228-1229 . denotes .
T12519 1229-1560 sentence denotes Whole-mount in situ hybridisations were performed on 8.5 dpc embryos (dissected away from maternal and extraembryonic tissues) using a brachyury (T) riboprobe [16] and on bisected decidual implantation sites from which embryos (8.5 dpc) had been removed using a placental lactogen-1 (Pl-1) riboprobe (see Protocol S1 for details).
T12520 1230-1235 JJ denotes Whole
T12521 1236-1241 NN denotes mount
T12522 1235-1236 HYPH denotes -
T12523 1250-1264 NNS denotes hybridisations
T12524 1242-1244 FW denotes in
T12525 1245-1249 FW denotes situ
T12526 1270-1279 VBN denotes performed
T12527 1265-1269 VBD denotes were
T12528 1280-1282 IN denotes on
T12529 1283-1286 CD denotes 8.5
T12530 1287-1290 NN denotes dpc
T12531 1291-1298 NNS denotes embryos
T12532 1299-1300 -LRB- denotes (
T12533 1300-1309 VBN denotes dissected
T12534 1310-1314 RB denotes away
T12535 1315-1319 IN denotes from
T12536 1320-1328 JJ denotes maternal
T12537 1348-1355 NNS denotes tissues
T12538 1329-1332 CC denotes and
T12539 1333-1347 JJ denotes extraembryonic
T12540 1355-1356 -RRB- denotes )
T12541 1357-1362 VBG denotes using
T12542 1363-1364 DT denotes a
T12543 1379-1388 NN denotes riboprobe
T12544 1365-1374 NN denotes brachyury
T12545 1375-1376 -LRB- denotes (
T12546 1376-1377 NN denotes T
T12547 1377-1378 -RRB- denotes )
T12548 1389-1390 -LRB- denotes [
T12549 1390-1392 CD denotes 16
T12550 1392-1393 -RRB- denotes ]
T12551 1394-1397 CC denotes and
T12552 1398-1400 IN denotes on
T12553 1401-1409 VBN denotes bisected
T12554 1432-1437 NNS denotes sites
T12555 1410-1418 JJ denotes decidual
T12556 1419-1431 NN denotes implantation
T12557 1438-1442 IN denotes from
T12558 1476-1483 VBN denotes removed
T12559 1443-1448 WDT denotes which
T12560 1449-1456 NNS denotes embryos
T12561 1457-1458 -LRB- denotes (
T12562 1462-1465 NN denotes dpc
T12563 1458-1461 CD denotes 8.5
T12564 1465-1466 -RRB- denotes )
T12565 1467-1470 VBD denotes had
T12566 1471-1475 VBN denotes been
T12567 1484-1489 VBG denotes using
T12568 1490-1491 DT denotes a
T12569 1520-1529 NN denotes riboprobe
T12570 1492-1501 JJ denotes placental
T12571 1502-1510 NN denotes lactogen
T12572 1510-1511 HYPH denotes -
T12573 1511-1512 CD denotes 1
T12574 1513-1514 -LRB- denotes (
T12575 1514-1516 NN denotes Pl
T12576 1516-1517 HYPH denotes -
T12577 1517-1518 CD denotes 1
T12578 1518-1519 -RRB- denotes )
T12579 1530-1531 -LRB- denotes (
T12580 1531-1534 VB denotes see
T12581 1535-1543 NN denotes Protocol
T12582 1544-1546 NN denotes S1
T12583 1547-1550 IN denotes for
T12584 1551-1558 NNS denotes details
T12585 1558-1559 -RRB- denotes )
T12586 1559-1560 . denotes .
R7662 T12293 T12292 punct ", ",Immunohistochemistry
R7663 T12294 T12295 nmod in,situ
R7664 T12295 T12296 nmod situ,hybridisation
R7665 T12296 T12292 conj hybridisation,Immunohistochemistry
R7666 T12297 T12296 punct ", ",hybridisation
R7667 T12298 T12296 cc and,hybridisation
R7668 T12299 T12300 compound TUNEL,assay
R7669 T12300 T12296 conj assay,hybridisation
R7670 T12301 T12300 punct .,assay
R7671 T12303 T12304 nummod 7.5,dpc
R7672 T12304 T12305 nmod dpc,swellings
R7673 T12305 T12307 nsubjpass swellings,dissected
R7674 T12306 T12305 amod decidual,swellings
R7675 T12308 T12307 auxpass were,dissected
R7676 T12309 T12307 advmod away,dissected
R7677 T12310 T12309 prep from,away
R7678 T12311 T12312 amod maternal,tissue
R7679 T12312 T12310 pobj tissue,from
R7680 T12313 T12307 cc and,dissected
R7681 T12314 T12307 conj fixed,dissected
R7682 T12315 T12314 prep in,fixed
R7683 T12316 T12317 nummod 4,%
R7684 T12317 T12318 compound %,paraformaldehyde
R7685 T12318 T12315 pobj paraformaldehyde,in
R7686 T12319 T12318 punct /,paraformaldehyde
R7687 T12320 T12318 appos PBS,paraformaldehyde
R7688 T12321 T12314 advmod overnight,fixed
R7689 T12322 T12314 prep at,fixed
R7690 T12323 T12324 nummod 4,°C
R7691 T12324 T12322 pobj °C,at
R7692 T12325 T12307 punct .,dissected
R7693 T12327 T12328 mark After,washed
R7694 T12328 T12331 advcl washed,dehydrated
R7695 T12329 T12328 nsubjpass embryos,washed
R7696 T12330 T12328 auxpass were,washed
R7697 T12332 T12328 advmod thoroughly,washed
R7698 T12333 T12328 prep in,washed
R7699 T12334 T12333 pobj PBS,in
R7700 T12335 T12331 punct ", ",dehydrated
R7701 T12336 T12331 nsubjpass they,dehydrated
R7702 T12337 T12331 auxpass were,dehydrated
R7703 T12338 T12331 prep through,dehydrated
R7704 T12339 T12340 det an,series
R7705 T12340 T12338 pobj series,through
R7706 T12341 T12340 compound ethanol,series
R7707 T12342 T12340 cc and,series
R7708 T12343 T12340 conj xylene,series
R7709 T12344 T12331 punct ", ",dehydrated
R7710 T12345 T12331 conj embedded,dehydrated
R7711 T12346 T12345 prep in,embedded
R7712 T12347 T12346 pobj paraffin,in
R7713 T12348 T12345 punct ", ",embedded
R7714 T12349 T12345 cc and,embedded
R7715 T12350 T12345 conj sectioned,embedded
R7716 T12351 T12350 prep at,sectioned
R7717 T12352 T12353 nummod 5,μm
R7718 T12353 T12351 pobj μm,at
R7719 T12354 T12331 punct .,dehydrated
R7720 T12356 T12357 nsubjpass Sections,processed
R7721 T12358 T12357 auxpass were,processed
R7722 T12359 T12357 prep for,processed
R7723 T12360 T12359 pobj immunohistochemistry,for
R7724 T12361 T12357 advcl using,processed
R7725 T12362 T12363 det the,System
R7726 T12363 T12361 dobj System,using
R7727 T12364 T12363 compound ABC,System
R7728 T12365 T12363 compound Staining,System
R7729 T12366 T12367 punct (,Biotechnology
R7730 T12367 T12363 parataxis Biotechnology,System
R7731 T12368 T12369 compound Santa,Cruz
R7732 T12369 T12367 compound Cruz,Biotechnology
R7733 T12370 T12367 punct ", ",Biotechnology
R7734 T12371 T12372 compound Santa,Cruz
R7735 T12372 T12367 npadvmod Cruz,Biotechnology
R7736 T12373 T12367 punct ", ",Biotechnology
R7737 T12374 T12367 npadvmod California,Biotechnology
R7738 T12375 T12367 punct ", ",Biotechnology
R7739 T12376 T12377 compound United,States
R7740 T12377 T12367 npadvmod States,Biotechnology
R7741 T12378 T12367 punct ),Biotechnology
R7742 T12379 T12361 prep according,using
R7743 T12380 T12379 prep to,according
R7744 T12381 T12382 det the,manufacturer
R7745 T12382 T12383 poss manufacturer,instructions
R7746 T12383 T12380 pobj instructions,to
R7747 T12384 T12382 case 's,manufacturer
R7748 T12385 T12357 punct .,processed
R7749 T12387 T12388 nsubjpass Sections,stained
R7750 T12389 T12388 auxpass were,stained
R7751 T12390 T12388 prep with,stained
R7752 T12391 T12392 nmod rabbit,antibodies
R7753 T12392 T12390 pobj antibodies,with
R7754 T12393 T12392 amod polyclonal,antibodies
R7755 T12394 T12392 prep against,antibodies
R7756 T12395 T12394 pobj ATRX,against
R7757 T12396 T12397 punct (,H
R7758 T12397 T12395 parataxis H,ATRX
R7759 T12398 T12397 punct -,H
R7760 T12399 T12397 nummod 300,H
R7761 T12400 T12397 punct ", ",H
R7762 T12401 T12402 compound Santa,Cruz
R7763 T12402 T12403 compound Cruz,Biotechnology
R7764 T12403 T12397 npadvmod Biotechnology,H
R7765 T12404 T12397 punct ),H
R7766 T12405 T12395 punct ", ",ATRX
R7767 T12406 T12407 amod Placental,I
R7768 T12407 T12395 conj I,ATRX
R7769 T12408 T12407 compound lactogen,I
R7770 T12409 T12407 punct -,I
R7771 T12410 T12411 punct (,AB1288
R7772 T12411 T12407 parataxis AB1288,I
R7773 T12412 T12411 punct ", ",AB1288
R7774 T12413 T12414 compound Chemicon,International
R7775 T12414 T12411 npadvmod International,AB1288
R7776 T12415 T12411 punct ", ",AB1288
R7777 T12416 T12411 npadvmod Temecula,AB1288
R7778 T12417 T12411 punct ", ",AB1288
R7779 T12418 T12411 npadvmod California,AB1288
R7780 T12419 T12411 punct ", ",AB1288
R7781 T12420 T12421 compound United,States
R7782 T12421 T12411 npadvmod States,AB1288
R7783 T12422 T12411 punct ),AB1288
R7784 T12423 T12407 cc and,I
R7785 T12424 T12425 nmod phospho,histone
R7786 T12425 T12430 compound histone,H3
R7787 T12426 T12427 punct (,Ser10
R7788 T12427 T12425 parataxis Ser10,histone
R7789 T12428 T12427 punct ),Ser10
R7790 T12429 T12425 punct -,histone
R7791 T12430 T12407 conj H3,I
R7792 T12431 T12432 punct (,570
R7793 T12432 T12430 parataxis 570,H3
R7794 T12433 T12432 nummod 06,570
R7795 T12434 T12432 punct –,570
R7796 T12435 T12432 punct ", ",570
R7797 T12436 T12437 compound Upstate,Biotechnology
R7798 T12437 T12432 npadvmod Biotechnology,570
R7799 T12438 T12432 punct ", ",570
R7800 T12439 T12432 npadvmod Waltham,570
R7801 T12440 T12432 punct ", ",570
R7802 T12441 T12432 npadvmod Massachusetts,570
R7803 T12442 T12432 punct ", ",570
R7804 T12443 T12444 compound United,States
R7805 T12444 T12432 npadvmod States,570
R7806 T12445 T12432 punct ),570
R7807 T12446 T12388 punct .,stained
R7808 T12448 T12449 advmod Where,appropriate
R7809 T12449 T12450 advcl appropriate,stained
R7810 T12451 T12450 punct ", ",stained
R7811 T12452 T12453 amod adjacent,sections
R7812 T12453 T12450 nsubjpass sections,stained
R7813 T12454 T12450 auxpass were,stained
R7814 T12455 T12450 prep with,stained
R7815 T12456 T12455 pobj haematoxylin,with
R7816 T12457 T12450 punct .,stained
R7817 T12459 T12460 prep In,analysed
R7818 T12461 T12462 det some,cases
R7819 T12462 T12459 pobj cases,In
R7820 T12463 T12460 punct ", ",analysed
R7821 T12464 T12465 amod adjacent,sections
R7822 T12465 T12460 nsubjpass sections,analysed
R7823 T12466 T12460 auxpass were,analysed
R7824 T12467 T12460 advmod also,analysed
R7825 T12468 T12469 aux to,detect
R7826 T12469 T12460 advcl detect,analysed
R7827 T12470 T12471 amod apoptotic,cells
R7828 T12471 T12469 dobj cells,detect
R7829 T12472 T12469 prep by,detect
R7830 T12473 T12472 pobj TUNEL,by
R7831 T12474 T12469 advcl using,detect
R7832 T12475 T12476 det the,kit
R7833 T12476 T12474 dobj kit,using
R7834 T12477 T12478 advmod in,situ
R7835 T12478 T12476 amod situ,kit
R7836 T12479 T12480 compound cell,death
R7837 T12480 T12481 compound death,detection
R7838 T12481 T12476 compound detection,kit
R7839 T12482 T12483 punct (,Roche
R7840 T12483 T12474 parataxis Roche,using
R7841 T12484 T12483 punct ", ",Roche
R7842 T12485 T12483 npadvmod Basel,Roche
R7843 T12486 T12483 punct ", ",Roche
R7844 T12487 T12483 npadvmod Switzerland,Roche
R7845 T12488 T12483 punct ),Roche
R7846 T12489 T12460 punct .,analysed
R7847 T12491 T12492 prep After,mounted
R7848 T12493 T12491 pobj labelling,After
R7849 T12494 T12492 punct ", ",mounted
R7850 T12495 T12496 det these,slides
R7851 T12496 T12492 nsubjpass slides,mounted
R7852 T12497 T12492 auxpass were,mounted
R7853 T12498 T12492 prep in,mounted
R7854 T12499 T12498 pobj Vectashield,in
R7855 T12500 T12499 acl containing,Vectashield
R7856 T12501 T12500 dobj DAPI,containing
R7857 T12502 T12503 punct (,Laboratories
R7858 T12503 T12499 parataxis Laboratories,Vectashield
R7859 T12504 T12503 compound Vector,Laboratories
R7860 T12505 T12503 punct ", ",Laboratories
R7861 T12506 T12503 npadvmod Burlingame,Laboratories
R7862 T12507 T12503 punct ", ",Laboratories
R7863 T12508 T12503 npadvmod California,Laboratories
R7864 T12509 T12503 punct ", ",Laboratories
R7865 T12510 T12511 compound United,States
R7866 T12511 T12503 npadvmod States,Laboratories
R7867 T12512 T12503 punct ),Laboratories
R7868 T12513 T12492 cc and,mounted
R7869 T12514 T12492 conj visualised,mounted
R7870 T12515 T12514 prep by,visualised
R7871 T12516 T12517 compound fluorescence,microscopy
R7872 T12517 T12515 pobj microscopy,by
R7873 T12518 T12492 punct .,mounted
R7874 T12520 T12521 amod Whole,mount
R7875 T12521 T12523 nmod mount,hybridisations
R7876 T12522 T12521 punct -,mount
R7877 T12523 T12526 nsubjpass hybridisations,performed
R7878 T12524 T12525 advmod in,situ
R7879 T12525 T12523 amod situ,hybridisations
R7880 T12527 T12526 auxpass were,performed
R7881 T12528 T12526 prep on,performed
R7882 T12529 T12530 nummod 8.5,dpc
R7883 T12530 T12531 compound dpc,embryos
R7884 T12531 T12528 pobj embryos,on
R7885 T12532 T12531 punct (,embryos
R7886 T12533 T12531 acl dissected,embryos
R7887 T12534 T12533 advmod away,dissected
R7888 T12535 T12534 prep from,away
R7889 T12536 T12537 amod maternal,tissues
R7890 T12537 T12535 pobj tissues,from
R7891 T12538 T12536 cc and,maternal
R7892 T12539 T12536 conj extraembryonic,maternal
R7893 T12540 T12533 punct ),dissected
R7894 T12541 T12533 advcl using,dissected
R7895 T12542 T12543 det a,riboprobe
R7896 T12543 T12541 dobj riboprobe,using
R7897 T12544 T12543 nmod brachyury,riboprobe
R7898 T12545 T12544 punct (,brachyury
R7899 T12546 T12544 appos T,brachyury
R7900 T12547 T12543 punct ),riboprobe
R7901 T12548 T12549 punct [,16
R7902 T12549 T12541 parataxis 16,using
R7903 T12550 T12549 punct ],16
R7904 T12551 T12528 cc and,on
R7905 T12552 T12528 conj on,on
R7906 T12553 T12554 amod bisected,sites
R7907 T12554 T12552 pobj sites,on
R7908 T12555 T12554 amod decidual,sites
R7909 T12556 T12554 compound implantation,sites
R7910 T12557 T12558 prep from,removed
R7911 T12558 T12554 relcl removed,sites
R7912 T12559 T12557 pobj which,from
R7913 T12560 T12558 nsubjpass embryos,removed
R7914 T12561 T12562 punct (,dpc
R7915 T12562 T12560 parataxis dpc,embryos
R7916 T12563 T12562 nummod 8.5,dpc
R7917 T12564 T12562 punct ),dpc
R7918 T12565 T12558 aux had,removed
R7919 T12566 T12558 auxpass been,removed
R7920 T12567 T12558 advcl using,removed
R7921 T12568 T12569 det a,riboprobe
R7922 T12569 T12567 dobj riboprobe,using
R7923 T12570 T12571 amod placental,lactogen
R7924 T12571 T12569 nmod lactogen,riboprobe
R7925 T12572 T12571 punct -,lactogen
R7926 T12573 T12571 nummod 1,lactogen
R7927 T12574 T12571 punct (,lactogen
R7928 T12575 T12571 appos Pl,lactogen
R7929 T12576 T12575 punct -,Pl
R7930 T12577 T12575 nummod 1,Pl
R7931 T12578 T12569 punct ),riboprobe
R7932 T12579 T12580 punct (,see
R7933 T12580 T12558 parataxis see,removed
R7934 T12581 T12582 compound Protocol,S1
R7935 T12582 T12580 dobj S1,see
R7936 T12583 T12580 prep for,see
R7937 T12584 T12583 pobj details,for
R7938 T12585 T12580 punct ),see
R7939 T12586 T12526 punct .,performed

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12252 30-43 GO:0097617 denotes hybridisation
T12253 70-78 UBERON:0002450 denotes decidual
T12254 123-129 UBERON:0000479 denotes tissue
T12255 146-162 CHEBI_EXT:paraformaldehye denotes paraformaldehyde
T12256 192-199 UBERON:0000922 denotes embryos
T12257 263-270 CHEBI:16236 denotes ethanol
T12258 282-288 CHEBI:27338 denotes xylene
T12259 553-559 NCBITaxon:9986 denotes rabbit
T12260 571-581 GO:0042571 denotes antibodies
T12261 590-594 PR_EXT:000004503 denotes ATRX
T12262 630-639 UBERON:0001987 denotes Placental
T12263 630-648 CHEBI:81588 denotes Placental lactogen
T12264 630-650 PR_EXT:000013543 denotes Placental lactogen-I
T12265 725-732 CHEBI:32958 denotes phospho
T12266 741-748 CHEBI:15358 denotes histone
T12267 741-751 PR_EXT:000027594 denotes histone H3
T12268 879-891 CHEBI:51686 denotes haematoxylin
T12269 955-964 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T12270 955-970 CL:0000445 denotes apoptotic cells
T12271 965-970 CL_GO_EXT:cell denotes cells
T12272 998-1002 CL_GO_EXT:cell denotes cell
T12273 998-1008 GO:0008219 denotes cell death
T12274 1058-1067 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelling
T12275 1121-1125 CHEBI:51231 denotes DAPI
T12276 1127-1133 SO_EXT:0000440 denotes Vector
T12277 1250-1264 GO:0097617 denotes hybridisations
T12278 1291-1298 UBERON:0000922 denotes embryos
T12279 1333-1355 UBERON:0005292 denotes extraembryonic tissues
T12280 1365-1374 PR_EXT:000016001 denotes brachyury
T12281 1376-1377 PR_EXT:000016001 denotes T
T12282 1379-1388 CHEBI_SO_EXT:riboprobe denotes riboprobe
T12283 1410-1418 UBERON:0002450 denotes decidual
T12284 1419-1431 GO:0007566 denotes implantation
T12285 1449-1456 UBERON:0000922 denotes embryos
T12286 1492-1501 UBERON:0001987 denotes placental
T12287 1492-1510 CHEBI:81588 denotes placental lactogen
T12288 1492-1512 PR_EXT:000013543 denotes placental lactogen-1
T12289 1514-1516 CHEBI:81588 denotes Pl
T12290 1514-1518 PR_EXT:000013543 denotes Pl-1
T12291 1520-1529 CHEBI_SO_EXT:riboprobe denotes riboprobe

2_test

Id Subject Object Predicate Lexical cue
16628246-1689462-85799792 1390-1392 1689462 denotes 16
T74395 1390-1392 1689462 denotes 16

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12219 30-43 GO:0097617 denotes hybridisation
T12220 70-78 UBERON:0002450 denotes decidual
T12221 123-129 UBERON:0000479 denotes tissue
T12222 192-199 UBERON:0000922 denotes embryos
T12223 263-270 CHEBI:16236 denotes ethanol
T12224 282-288 CHEBI:27338 denotes xylene
T12225 553-559 NCBITaxon:9986 denotes rabbit
T12226 571-581 GO:0042571 denotes antibodies
T12227 590-594 PR:000004503 denotes ATRX
T12228 630-639 UBERON:0001987 denotes Placental
T12229 630-648 CHEBI:81588 denotes Placental lactogen
T12230 630-650 PR:000013543 denotes Placental lactogen-I
T12231 725-732 CHEBI:32958 denotes phospho
T12232 741-748 CHEBI:15358 denotes histone
T12233 741-751 PR:000027594 denotes histone H3
T12234 879-891 CHEBI:51686 denotes haematoxylin
T12235 955-970 CL:0000445 denotes apoptotic cells
T12236 998-1008 GO:0008219 denotes cell death
T12237 1121-1125 CHEBI:51231 denotes DAPI
T12238 1127-1133 SO:0000440 denotes Vector
T12239 1250-1264 GO:0097617 denotes hybridisations
T12240 1291-1298 UBERON:0000922 denotes embryos
T12241 1333-1355 UBERON:0005292 denotes extraembryonic tissues
T12242 1365-1374 PR:000016001 denotes brachyury
T12243 1376-1377 PR:000016001 denotes T
T12244 1410-1418 UBERON:0002450 denotes decidual
T12245 1419-1431 GO:0007566 denotes implantation
T12246 1449-1456 UBERON:0000922 denotes embryos
T12247 1492-1501 UBERON:0001987 denotes placental
T12248 1492-1510 CHEBI:81588 denotes placental lactogen
T12249 1492-1512 PR:000013543 denotes placental lactogen-1
T12250 1514-1516 CHEBI:81588 denotes Pl
T12251 1514-1518 PR:000013543 denotes Pl-1