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PMC:1440874 / 46058-46693 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T10272 0-3 CD denotes One
T10273 4-15 NN denotes possibility
T10274 16-18 VBZ denotes is
T10275 19-23 IN denotes that
T10276 90-92 VBZ denotes is
T10277 23-25 , denotes ,
T10278 25-29 IN denotes like
T10279 30-34 DT denotes some
T10280 50-55 NNS denotes genes
T10281 35-40 JJ denotes other
T10282 41-42 NN denotes X
T10283 43-49 JJ denotes linked
T10284 42-43 HYPH denotes -
T10285 55-57 , denotes ,
T10286 57-66 NN denotes silencing
T10287 67-69 IN denotes of
T10288 70-73 DT denotes the
T10289 79-83 NN denotes gene
T10290 74-78 NN denotes Atrx
T10291 84-86 IN denotes on
T10292 87-89 NN denotes Xp
T10293 93-103 JJ denotes incomplete
T10294 103-105 , denotes ,
T10295 105-109 JJ denotes such
T10296 121-123 VBZ denotes is
T10297 110-114 IN denotes that
T10298 115-120 EX denotes there
T10299 124-130 RB denotes always
T10300 131-132 DT denotes a
T10301 150-156 NN denotes output
T10302 133-136 JJ denotes low
T10303 137-142 NN denotes level
T10304 136-137 HYPH denotes -
T10305 142-144 , denotes ,
T10306 144-149 JJ denotes leaky
T10307 157-159 IN denotes of
T10308 160-164 NN denotes Atrx
T10309 165-169 IN denotes from
T10310 170-171 DT denotes a
T10311 196-206 NN denotes chromosome
T10312 172-180 RB denotes normally
T10313 181-192 VBN denotes inactivated
T10314 193-195 NN denotes Xp
T10315 207-209 IN denotes in
T10316 210-224 JJ denotes extraembryonic
T10317 225-232 NNS denotes tissues
T10318 232-233 . denotes .
T10319 233-511 sentence denotes However, it was recently demonstrated that the paternal Atrx (called Xnp) allele is completely silenced in a normal mouse trophoblast stem cell line [32], suggesting that Atrx does not normally escape imprinted X-inactivation in the extraembryonic tissues of wild-type females.
T10320 234-241 RB denotes However
T10321 259-271 VBN denotes demonstrated
T10322 241-243 , denotes ,
T10323 243-245 PRP denotes it
T10324 246-249 VBD denotes was
T10325 250-258 RB denotes recently
T10326 272-276 IN denotes that
T10327 329-337 VBN denotes silenced
T10328 277-280 DT denotes the
T10329 308-314 NN denotes allele
T10330 281-289 JJ denotes paternal
T10331 290-294 NN denotes Atrx
T10332 295-296 -LRB- denotes (
T10333 296-302 VBN denotes called
T10334 303-306 NN denotes Xnp
T10335 306-307 -RRB- denotes )
T10336 315-317 VBZ denotes is
T10337 318-328 RB denotes completely
T10338 338-340 IN denotes in
T10339 341-342 DT denotes a
T10340 378-382 NN denotes line
T10341 343-349 JJ denotes normal
T10342 350-355 NN denotes mouse
T10343 356-367 NN denotes trophoblast
T10344 368-372 NN denotes stem
T10345 373-377 NN denotes cell
T10346 383-384 -LRB- denotes [
T10347 384-386 CD denotes 32
T10348 386-387 -RRB- denotes ]
T10349 387-389 , denotes ,
T10350 389-399 VBG denotes suggesting
T10351 400-404 IN denotes that
T10352 428-434 VB denotes escape
T10353 405-409 NN denotes Atrx
T10354 410-414 VBZ denotes does
T10355 415-418 RB denotes not
T10356 419-427 RB denotes normally
T10357 435-444 VBN denotes imprinted
T10358 447-459 NN denotes inactivation
T10359 445-446 NN denotes X
T10360 446-447 HYPH denotes -
T10361 460-462 IN denotes in
T10362 463-466 DT denotes the
T10363 482-489 NNS denotes tissues
T10364 467-481 JJ denotes extraembryonic
T10365 490-492 IN denotes of
T10366 493-497 JJ denotes wild
T10367 498-502 NN denotes type
T10368 497-498 HYPH denotes -
T10369 503-510 NNS denotes females
T10370 510-511 . denotes .
T10371 511-635 sentence denotes Thus, the expression of the Xp-linked Atrx WT allele that we observed is unique to female carriers of the Atrx null allele.
T10372 512-516 RB denotes Thus
T10373 582-584 VBZ denotes is
T10374 516-518 , denotes ,
T10375 518-521 DT denotes the
T10376 522-532 NN denotes expression
T10377 533-535 IN denotes of
T10378 536-539 DT denotes the
T10379 558-564 NN denotes allele
T10380 540-542 NN denotes Xp
T10381 543-549 VBN denotes linked
T10382 542-543 HYPH denotes -
T10383 550-557 NN denotes Atrx WT
T10384 565-569 WDT denotes that
T10385 573-581 VBD denotes observed
T10386 570-572 PRP denotes we
T10387 585-591 JJ denotes unique
T10388 592-594 IN denotes to
T10389 595-601 JJ denotes female
T10390 602-610 NNS denotes carriers
T10391 611-613 IN denotes of
T10392 614-617 DT denotes the
T10393 628-634 NN denotes allele
T10394 618-627 JJ denotes Atrx null
T10395 634-635 . denotes .
R6247 T10272 T10273 nummod One,possibility
R6248 T10273 T10274 nsubj possibility,is
R6249 T10275 T10276 mark that,is
R6250 T10276 T10274 ccomp is,is
R6251 T10277 T10276 punct ", ",is
R6252 T10278 T10276 prep like,is
R6253 T10279 T10280 det some,genes
R6254 T10280 T10278 pobj genes,like
R6255 T10281 T10280 amod other,genes
R6256 T10282 T10283 npadvmod X,linked
R6257 T10283 T10280 amod linked,genes
R6258 T10284 T10283 punct -,linked
R6259 T10285 T10276 punct ", ",is
R6260 T10286 T10276 nsubj silencing,is
R6261 T10287 T10286 prep of,silencing
R6262 T10288 T10289 det the,gene
R6263 T10289 T10287 pobj gene,of
R6264 T10290 T10289 compound Atrx,gene
R6265 T10291 T10289 prep on,gene
R6266 T10292 T10291 pobj Xp,on
R6267 T10293 T10276 acomp incomplete,is
R6268 T10294 T10276 punct ", ",is
R6269 T10295 T10296 amod such,is
R6270 T10296 T10276 advcl is,is
R6271 T10297 T10296 mark that,is
R6272 T10298 T10296 expl there,is
R6273 T10299 T10296 advmod always,is
R6274 T10300 T10301 det a,output
R6275 T10301 T10296 attr output,is
R6276 T10302 T10303 amod low,level
R6277 T10303 T10301 nmod level,output
R6278 T10304 T10303 punct -,level
R6279 T10305 T10301 punct ", ",output
R6280 T10306 T10301 amod leaky,output
R6281 T10307 T10301 prep of,output
R6282 T10308 T10307 pobj Atrx,of
R6283 T10309 T10301 prep from,output
R6284 T10310 T10311 det a,chromosome
R6285 T10311 T10309 pobj chromosome,from
R6286 T10312 T10313 advmod normally,inactivated
R6287 T10313 T10311 amod inactivated,chromosome
R6288 T10314 T10311 compound Xp,chromosome
R6289 T10315 T10296 prep in,is
R6290 T10316 T10317 amod extraembryonic,tissues
R6291 T10317 T10315 pobj tissues,in
R6292 T10318 T10274 punct .,is
R6293 T10320 T10321 advmod However,demonstrated
R6294 T10322 T10321 punct ", ",demonstrated
R6295 T10323 T10321 nsubjpass it,demonstrated
R6296 T10324 T10321 auxpass was,demonstrated
R6297 T10325 T10321 advmod recently,demonstrated
R6298 T10326 T10327 mark that,silenced
R6299 T10327 T10321 ccomp silenced,demonstrated
R6300 T10328 T10329 det the,allele
R6301 T10329 T10327 nsubjpass allele,silenced
R6302 T10330 T10331 amod paternal,Atrx
R6303 T10331 T10329 nmod Atrx,allele
R6304 T10332 T10331 punct (,Atrx
R6305 T10333 T10331 acl called,Atrx
R6306 T10334 T10333 oprd Xnp,called
R6307 T10335 T10329 punct ),allele
R6308 T10336 T10327 auxpass is,silenced
R6309 T10337 T10327 advmod completely,silenced
R6310 T10338 T10327 prep in,silenced
R6311 T10339 T10340 det a,line
R6312 T10340 T10338 pobj line,in
R6313 T10341 T10340 amod normal,line
R6314 T10342 T10343 compound mouse,trophoblast
R6315 T10343 T10340 compound trophoblast,line
R6316 T10344 T10345 compound stem,cell
R6317 T10345 T10340 compound cell,line
R6318 T10346 T10347 punct [,32
R6319 T10347 T10321 parataxis 32,demonstrated
R6320 T10348 T10347 punct ],32
R6321 T10349 T10321 punct ", ",demonstrated
R6322 T10350 T10321 advcl suggesting,demonstrated
R6323 T10351 T10352 mark that,escape
R6324 T10352 T10350 ccomp escape,suggesting
R6325 T10353 T10352 nsubj Atrx,escape
R6326 T10354 T10352 aux does,escape
R6327 T10355 T10352 neg not,escape
R6328 T10356 T10352 advmod normally,escape
R6329 T10357 T10358 amod imprinted,inactivation
R6330 T10358 T10352 dobj inactivation,escape
R6331 T10359 T10358 compound X,inactivation
R6332 T10360 T10358 punct -,inactivation
R6333 T10361 T10358 prep in,inactivation
R6334 T10362 T10363 det the,tissues
R6335 T10363 T10361 pobj tissues,in
R6336 T10364 T10363 amod extraembryonic,tissues
R6337 T10365 T10363 prep of,tissues
R6338 T10366 T10367 amod wild,type
R6339 T10367 T10369 compound type,females
R6340 T10368 T10367 punct -,type
R6341 T10369 T10365 pobj females,of
R6342 T10370 T10321 punct .,demonstrated
R6343 T10372 T10373 advmod Thus,is
R6344 T10374 T10373 punct ", ",is
R6345 T10375 T10376 det the,expression
R6346 T10376 T10373 nsubj expression,is
R6347 T10377 T10376 prep of,expression
R6348 T10378 T10379 det the,allele
R6349 T10379 T10377 pobj allele,of
R6350 T10380 T10381 npadvmod Xp,linked
R6351 T10381 T10379 amod linked,allele
R6352 T10382 T10381 punct -,linked
R6353 T10383 T10379 compound Atrx WT,allele
R6354 T10384 T10385 dep that,observed
R6355 T10385 T10379 relcl observed,allele
R6356 T10386 T10385 nsubj we,observed
R6357 T10387 T10373 acomp unique,is
R6358 T10388 T10387 prep to,unique
R6359 T10389 T10390 amod female,carriers
R6360 T10390 T10388 pobj carriers,to
R6361 T10391 T10390 prep of,carriers
R6362 T10392 T10393 det the,allele
R6363 T10393 T10391 pobj allele,of
R6364 T10394 T10393 amod Atrx null,allele
R6365 T10395 T10373 punct .,is

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T9822 41-42 GO:0000805 denotes X
T9823 50-55 SO_EXT:0000704 denotes genes
T9825 57-69,79-83 GO:0016458 denotes silencing of gene
T9826 74-78 PR_EXT:000004503 denotes Atrx
T9827 79-83 SO_EXT:0000704 denotes gene
T9828 160-164 PR_EXT:000004503 denotes Atrx
T9829 196-206 GO_SO_EXT:chromosome denotes chromosome
T9830 210-232 UBERON:0005292 denotes extraembryonic tissues
T9831 290-294 PR_EXT:000004503 denotes Atrx
T9832 308-314 SO_EXT:0001023 denotes allele
T9833 329-337 GO:0016458 denotes silenced
T9834 350-355 NCBITaxon:10088 denotes mouse
T9835 356-367 UBERON:0000088 denotes trophoblast
T9837 356-367,373-377 CL:0000351 denotes trophoblast cell
T9838 368-377 CL:0000034 denotes stem cell
T9839 373-377 CL_GO_EXT:cell denotes cell
T9840 405-409 PR_EXT:000004503 denotes Atrx
T9841 435-459 GO:0060819 denotes imprinted X-inactivation
T9842 445-446 GO:0000805 denotes X
T9843 467-489 UBERON:0005292 denotes extraembryonic tissues
T9844 493-502 SO_EXT:wild_type_entity_or_quality denotes wild-type
T9845 503-510 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T9846 522-532 GO:0010467 denotes expression
T9847 550-554 PR_EXT:000004503 denotes Atrx
T9848 555-557 SO_EXT:wild_type_entity_or_quality denotes WT
T9849 558-564 SO_EXT:0001023 denotes allele
T9850 595-601 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes female
T9851 618-622 PR_EXT:000004503 denotes Atrx
T9852 623-627 SO_EXT:sequence_nullness denotes null
T9853 628-634 SO_EXT:0001023 denotes allele

2_test

Id Subject Object Predicate Lexical cue
16628246-14661031-85799775 384-386 14661031 denotes 32
T87099 384-386 14661031 denotes 32

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T9656 41-42 GO:0000805 denotes X
T9657 50-55 SO:0000704 denotes genes
T9659 57-69,79-83 GO:0016458 denotes silencing of gene
T9660 74-78 PR:000004503 denotes Atrx
T9661 79-83 SO:0000704 denotes gene
T9662 160-164 PR:000004503 denotes Atrx
T9663 210-232 UBERON:0005292 denotes extraembryonic tissues
T9664 290-294 PR:000004503 denotes Atrx
T9665 308-314 SO:0001023 denotes allele
T9666 329-337 GO:0016458 denotes silenced
T9667 350-355 NCBITaxon:10088 denotes mouse
T9668 356-367 UBERON:0000088 denotes trophoblast
T9670 356-367,373-377 CL:0000351 denotes trophoblast cell
T9671 368-377 CL:0000034 denotes stem cell
T9672 405-409 PR:000004503 denotes Atrx
T9673 435-459 GO:0060819 denotes imprinted X-inactivation
T9674 445-446 GO:0000805 denotes X
T9675 467-489 UBERON:0005292 denotes extraembryonic tissues
T9676 522-532 GO:0010467 denotes expression
T9677 550-554 PR:000004503 denotes Atrx
T9678 558-564 SO:0001023 denotes allele
T9679 618-622 PR:000004503 denotes Atrx
T9680 628-634 SO:0001023 denotes allele