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PMC:1440874 / 4391-5401 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1037 0-1010 sentence denotes Figure 1 Schematic Representation of the ATRX Isoforms Shown at the top is the human ATRX cDNA. The boxes represent the 36 exons. The introns are not to scale. The alternative splicing of exons 6 and 7 is indicated. Shown underneath are the two ATRX protein isoforms. Full-length ATRX (~280 kDa) is encoded by the largest open reading frame. The positions of the principal features (the PHD-like domain and the seven SWI/SNF-like motifs) are indicated. Above full-length ATRX is shown the truncated ATRXt isoform (apparent molecular weight of ~200 kDa) that arises through the failure to splice intron 11 and the use of an intronic poly(A) signal. The intron-encoded region of ATRXt is indicated as a filled grey box. Locations of recombinant proteins (A2, FXNP5, and H-300) used to generate antibodies are shown. The scale bar represents 200 amino acids. Disease-causing missense mutations are clustered in two regions of the gene: a PHD-like zinc finger domain and a SNF2-like ATPase domain (Figure 1) [6].
T1038 858-865 NN denotes Disease
T1039 866-873 VBG denotes causing
T1040 865-866 HYPH denotes -
T1041 883-892 NNS denotes mutations
T1042 874-882 NN denotes missense
T1043 897-906 VBN denotes clustered
T1044 893-896 VBP denotes are
T1045 907-909 IN denotes in
T1046 910-913 CD denotes two
T1047 914-921 NNS denotes regions
T1048 922-924 IN denotes of
T1049 925-928 DT denotes the
T1050 929-933 NN denotes gene
T1051 933-935 : denotes :
T1052 935-936 DT denotes a
T1053 958-964 NN denotes domain
T1054 937-940 NN denotes PHD
T1055 941-945 JJ denotes like
T1056 940-941 HYPH denotes -
T1057 946-950 NN denotes zinc
T1058 951-957 NN denotes finger
T1059 965-968 CC denotes and
T1060 969-970 DT denotes a
T1061 988-994 NN denotes domain
T1062 971-975 NN denotes SNF2
T1063 976-980 JJ denotes like
T1064 975-976 HYPH denotes -
T1065 981-987 NN denotes ATPase
T1066 995-996 -LRB- denotes (
T1067 996-1002 NN denotes Figure
T1068 1003-1004 CD denotes 1
T1069 1004-1005 -RRB- denotes )
T1070 1006-1007 -LRB- denotes [
T1071 1007-1008 CD denotes 6
T1072 1008-1009 -RRB- denotes ]
T1073 1009-1010 . denotes .
R549 T1038 T1039 npadvmod Disease,causing
R550 T1039 T1041 amod causing,mutations
R551 T1040 T1039 punct -,causing
R552 T1041 T1043 nsubjpass mutations,clustered
R553 T1042 T1041 compound missense,mutations
R554 T1044 T1043 auxpass are,clustered
R555 T1045 T1043 prep in,clustered
R556 T1046 T1047 nummod two,regions
R557 T1047 T1045 pobj regions,in
R558 T1048 T1047 prep of,regions
R559 T1049 T1050 det the,gene
R560 T1050 T1048 pobj gene,of
R561 T1051 T1047 punct : ,regions
R562 T1052 T1053 det a,domain
R563 T1053 T1047 appos domain,regions
R564 T1054 T1055 npadvmod PHD,like
R565 T1055 T1053 amod like,domain
R566 T1056 T1055 punct -,like
R567 T1057 T1053 compound zinc,domain
R568 T1058 T1053 compound finger,domain
R569 T1059 T1053 cc and,domain
R570 T1060 T1061 det a,domain
R571 T1061 T1053 conj domain,domain
R572 T1062 T1063 npadvmod SNF2,like
R573 T1063 T1061 amod like,domain
R574 T1064 T1063 punct -,like
R575 T1065 T1061 compound ATPase,domain
R576 T1066 T1067 punct (,Figure
R577 T1067 T1043 parataxis Figure,clustered
R578 T1068 T1067 nummod 1,Figure
R579 T1069 T1067 punct ),Figure
R580 T1070 T1071 punct [,6
R581 T1071 T1043 parataxis 6,clustered
R582 T1072 T1071 punct ],6
R583 T1073 T1043 punct .,clustered

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T650 874-882 SO_EXT:missense_quality_or_entity denotes missense
T651 883-892 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T653 914-924,929-933 SO_EXT:0000842 denotes regions of gene
T654 946-950 CHEBI_EXT:zinc denotes zinc
T655 958-964 SO_EXT:0000417 denotes domain
T656 971-975 PR_EXT:P22082 denotes SNF2
T657 981-987 GO_EXT:0016887 denotes ATPase
T658 988-994 SO_EXT:0000417 denotes domain

2_test

Id Subject Object Predicate Lexical cue
16628246-9326931-85799740 1007-1008 9326931 denotes 6
T12168 1007-1008 9326931 denotes 6

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T538 914-924,929-933 SO:0000842 denotes regions of gene
T539 958-964 SO:0000417 denotes domain
T540 971-975 PR:P22082 denotes SNF2
T541 988-994 SO:0000417 denotes domain