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PMC:1359074 / 6985-7198 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-15730849-85760981 209-211 15730849 denotes 27
T9633 209-211 15730849 denotes 27

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2462 211-212 -RRB- denotes ]
T2461 209-211 CD denotes 27
T2460 208-209 -LRB- denotes [
T2459 198-207 VB denotes silencing
T2458 196-197 RB denotes ɛ
T2457 187-195 VB denotes regulate
T2456 184-186 TO denotes to
T2455 182-183 -RRB- denotes )
T2454 173-182 NN denotes complexes
T2453 165-172 NN denotes protein
T2452 162-164 IN denotes of
T2451 157-161 NN denotes part
T2450 154-156 IN denotes as
T2449 153-154 -LRB- denotes (
T2448 144-152 NN denotes elements
T2447 140-143 NN denotes DNA
T2446 134-139 DT denotes these
T2445 131-133 TO denotes to
T2444 126-130 VB denotes bind
T2443 117-125 RB denotes directly
T2442 114-116 TO denotes to
T2441 108-113 VB denotes shown
T2440 104-107 CC denotes and
T2439 93-103 VB denotes identified
T2438 88-92 VB denotes been
T2437 83-87 VB denotes have
T2436 78-82 NNP denotes DRED
T2435 74-77 CC denotes and
T2434 72-73 -COMMA- denotes ,
T2433 65-72 NN denotes COUP-TF
T2432 63-64 -COMMA- denotes ,
T2431 59-63 NN denotes YY-1
T2430 57-58 -COMMA- denotes ,
T2429 51-57 NN denotes GATA-1
T2428 48-50 IN denotes as
T2427 43-47 JJ denotes such
T2426 41-42 -COMMA- denotes ,
T2425 34-41 NN denotes factors
T2424 20-33 NN denotes transcription
T2423 6-19 JJ denotes corresponding
T2422 0-5 PRP-DOLLAR- denotes Their
R1534 T2425 T2422 arg1Of factors,Their
R1535 T2425 T2423 arg1Of factors,corresponding
R1536 T2425 T2424 arg1Of factors,transcription
R1537 T2425 T2426 arg1Of factors,","
R1538 T2425 T2428 arg1Of factors,as
R1540 T2425 T2437 arg1Of factors,have
R1541 T2425 T2438 arg1Of factors,been
R1542 T2425 T2439 arg2Of factors,identified
R1543 T2425 T2441 arg2Of factors,shown
R1544 T2425 T2444 arg1Of factors,bind
R1545 T2425 T2457 arg1Of factors,regulate
R1548 T2428 T2427 arg1Of as,such
R1550 T2429 T2430 arg1Of GATA-1,","
R1551 T2430 T2432 arg1Of ",",","
R1552 T2431 T2430 arg2Of YY-1,","
R1553 T2432 T2435 arg1Of ",",and
R1555 T2433 T2432 arg2Of COUP-TF,","
R1556 T2435 T2428 arg2Of and,as
R1557 T2435 T2434 arg1Of and,","
R1558 T2436 T2435 arg2Of DRED,and
R1560 T2439 T2440 arg1Of identified,and
R1561 T2440 T2437 arg2Of and,have
R1562 T2440 T2438 arg2Of and,been
R1563 T2441 T2440 arg2Of shown,and
R1564 T2444 T2441 arg3Of bind,shown
R1565 T2444 T2442 arg1Of bind,to
R1566 T2444 T2443 arg1Of bind,directly
R1567 T2444 T2445 arg1Of bind,to
R1568 T2444 T2449 arg1Of bind,(
R1569 T2444 T2456 modOf bind,to
R1570 T2444 T2459 modOf bind,silencing
R1571 T2444 T2460 arg1Of bind,[
R1573 T2448 T2445 arg2Of elements,to
R1574 T2448 T2446 arg1Of elements,these
R1575 T2448 T2447 arg1Of elements,DNA
R1577 T2450 T2449 arg2Of as,(
R1579 T2451 T2450 arg2Of part,as
R1580 T2451 T2452 arg1Of part,of
R1583 T2454 T2452 arg2Of complexes,of
R1584 T2454 T2453 arg1Of complexes,protein
R1585 T2455 T2449 arg3Of ),(
R1586 T2457 T2456 arg1Of regulate,to
R1587 T2457 T2458 arg1Of regulate,ɛ
R1590 T2461 T2460 arg2Of 27,[
R1591 T2462 T2460 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1455 196-197 Protein denotes ɛ
T1454 78-82 Protein denotes DRED
T1453 65-72 Protein denotes COUP-TF
T1452 59-63 Protein denotes YY-1
T1451 51-57 Protein denotes GATA-1

GO-BP

Id Subject Object Predicate Lexical cue
T1241 20-33 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T1498 165-182 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes

sentences

Id Subject Object Predicate Lexical cue
T1225 0-213 Sentence denotes Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27].
T45 0-213 Sentence denotes Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27].

simple1

Id Subject Object Predicate Lexical cue
T1682 196-197 Protein denotes ɛ
T1681 78-82 Protein denotes DRED
T1680 65-72 Protein denotes COUP-TF
T1679 59-63 Protein denotes YY-1
T1678 51-57 Protein denotes GATA-1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4290 198-207 Negative_regulation denotes silencing
T4289 126-130 Binding denotes bind
T4288 187-195 Regulation denotes regulate
T4260 196-197 Protein denotes ɛ
T4259 78-82 Protein denotes DRED
T4258 65-72 Protein denotes COUP-TF
T4257 59-63 Protein denotes YY-1
T4256 51-57 Protein denotes GATA-1
R3044 T4258 T4289 themeOf COUP-TF,bind
R3045 T4260 T4288 themeOf ɛ,regulate
R3046 T4260 T4290 themeOf ɛ,silencing

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2752 198-207 Negative_regulation denotes silencing
T2751 187-195 Regulation denotes regulate
T2750 126-130 Binding denotes bind
T2724 196-197 Protein denotes ɛ
T2723 78-82 Protein denotes DRED
T2722 65-72 Protein denotes COUP-TF
T2721 59-63 Protein denotes YY-1
T2720 51-57 Protein denotes GATA-1
R1820 T2720 T2750 themeOf GATA-1,bind
R1822 T2724 T2752 themeOf ɛ,silencing
R1859 T2752 T2751 themeOf silencing,regulate

DLUT931

Id Subject Object Predicate Lexical cue
T2832 187-195 Regulation denotes regulate
T2831 198-207 Negative_regulation denotes silencing
T2802 196-197 Protein denotes ɛ
T2801 78-82 Protein denotes DRED
T2800 65-72 Protein denotes COUP-TF
T2799 59-63 Protein denotes YY-1
T2798 51-57 Protein denotes GATA-1
R1882 T2800 T2832 causeOf COUP-TF,regulate
R1883 T2802 T2831 themeOf ɛ,silencing
R1886 T2831 T2832 themeOf silencing,regulate

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4049 196-197 Protein denotes ɛ
T4217 187-197 Regulation denotes regulate ɛ
T4186 78-82 Protein denotes DRED
T4181 51-57 Protein denotes GATA-1
T4136 59-63 Protein denotes YY-1
T4124 65-72 Protein denotes COUP-TF
T4158 162-182 Entity denotes of protein complexes
T4167 140-143 Entity denotes DNA
R2966 T4049 T4217 themeOf ɛ,regulate ɛ

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3689 114-116 TO denotes to
T3688 108-113 VBN denotes shown
T3687 104-107 CC denotes and
T3686 93-103 VBN denotes identified
T3685 88-92 VBN denotes been
T3684 83-87 VBP denotes have
T3683 78-82 NNP denotes DRED
T3682 74-77 CC denotes and
T3681 72-73 , denotes ,
T3680 65-72 NNP denotes COUP-TF
T3679 63-64 , denotes ,
T3678 59-63 NNP denotes YY-1
T3677 57-58 , denotes ,
T3676 51-57 NNP denotes GATA-1
T3675 48-50 IN denotes as
T3674 43-47 JJ denotes such
T3673 41-42 , denotes ,
T3672 34-41 NNS denotes factors
T3671 20-33 NN denotes transcription
T3670 6-19 JJ denotes corresponding
T3669 0-5 PRP$ denotes Their
T3710 212-213 . denotes .
T3709 211-212 NNP denotes ]
T3708 209-211 CD denotes 27
T3707 208-209 NNP denotes [
T3706 198-207 VBG denotes silencing
T3705 196-197 NN denotes ɛ
T3704 187-195 VB denotes regulate
T3703 184-186 TO denotes to
T3702 182-183 -RRB- denotes )
T3701 173-182 NNS denotes complexes
T3700 165-172 NN denotes protein
T3699 162-164 IN denotes of
T3698 157-161 NN denotes part
T3697 154-156 IN denotes as
T3696 153-154 -LRB- denotes (
T3695 144-152 NNS denotes elements
T3694 140-143 NNP denotes DNA
T3693 134-139 DT denotes these
T3692 131-133 TO denotes to
T3691 126-130 NN denotes bind
T3690 117-125 RB denotes directly
R2657 T3702 T3688 punct ),shown
R2662 T3703 T3704 aux to,regulate
R2666 T3704 T3688 advcl regulate,shown
R2670 T3705 T3704 dobj ɛ,regulate
R2674 T3706 T3705 acl silencing,ɛ
R2677 T3707 T3709 nmod [,]
R2679 T3669 T3672 poss Their,factors
R2680 T3670 T3672 amod corresponding,factors
R2681 T3708 T3709 nummod 27,]
R2682 T3671 T3672 compound transcription,factors
R2683 T3709 T3706 dobj ],silencing
R2684 T3672 T3686 nsubjpass factors,identified
R2685 T3673 T3672 punct ",",factors
R2686 T3674 T3675 amod such,as
R2687 T3710 T3686 punct .,identified
R2688 T3675 T3672 prep as,factors
R2689 T3676 T3675 pobj GATA-1,as
R2690 T3677 T3676 punct ",",GATA-1
R2692 T3678 T3676 conj YY-1,GATA-1
R2693 T3679 T3678 punct ",",YY-1
R2695 T3680 T3678 conj COUP-TF,YY-1
R2696 T3681 T3680 punct ",",COUP-TF
R2697 T3682 T3680 cc and,COUP-TF
R2699 T3683 T3680 conj DRED,COUP-TF
R2700 T3684 T3686 aux have,identified
R2701 T3685 T3686 auxpass been,identified
R2703 T3686 T3686 ROOT identified,identified
R2704 T3687 T3686 cc and,identified
R2705 T3688 T3686 conj shown,identified
R2707 T3689 T3691 aux to,bind
R2708 T3690 T3691 advmod directly,bind
R2709 T3691 T3688 xcomp bind,shown
R2711 T3692 T3691 prep to,bind
R2712 T3693 T3695 det these,elements
R2713 T3694 T3695 compound DNA,elements
R2715 T3695 T3692 pobj elements,to
R2716 T3696 T3695 punct (,elements
R2717 T3697 T3688 prep as,shown
R2718 T3698 T3697 pobj part,as
R2719 T3699 T3698 prep of,part
R2720 T3700 T3701 compound protein,complexes
R2722 T3701 T3699 pobj complexes,of

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1560 126-130 Binding denotes bind
T1559 65-72 Protein denotes COUP-TF
T1558 59-63 Protein denotes YY-1
T1557 51-57 Protein denotes GATA-1
R780 T1558 T1560 themeOf YY-1,bind

testone

Id Subject Object Predicate Lexical cue
T1052 198-207 Negative_regulation denotes silencing
T1051 187-195 Regulation denotes regulate
T1050 126-130 Binding denotes bind
T1018 196-197 Protein denotes ɛ
T1017 78-82 Protein denotes DRED
T1016 65-72 Protein denotes COUP-TF
T1015 59-63 Protein denotes YY-1
T1014 51-57 Protein denotes GATA-1
R615 T1014 T1050 themeOf GATA-1,bind
R616 T1015 T1050 themeOf YY-1,bind
R617 T1016 T1050 themeOf COUP-TF,bind
R618 T1017 T1050 themeOf DRED,bind
R619 T1018 T1052 themeOf ɛ,silencing
R635 T1050 T1051 causeOf bind,regulate
R636 T1052 T1051 themeOf silencing,regulate

test3

Id Subject Object Predicate Lexical cue
T1106 196-197 Protein denotes ɛ
T1105 78-82 Protein denotes DRED
T1104 65-72 Protein denotes COUP-TF
T1103 59-63 Protein denotes YY-1
T1102 51-57 Protein denotes GATA-1
T1177 198-207 Negative_regulation denotes silencing
T1176 196-197 Protein denotes ɛ
T1175 187-195 Regulation denotes regulate
T1174 126-130 Binding denotes bind
T1173 78-82 Protein denotes DRED
T1172 65-72 Protein denotes COUP-TF
T1171 59-63 Protein denotes YY-1
T1170 51-57 Protein denotes GATA-1
R662 T1173 T1174 themeOf DRED,bind
R663 T1173 T1175 causeOf DRED,regulate
R664 T1174 T1175 causeOf bind,regulate
R665 T1176 T1177 themeOf ɛ,silencing
R666 T1177 T1175 themeOf silencing,regulate
R658 T1170 T1174 themeOf GATA-1,bind
R659 T1171 T1174 themeOf YY-1,bind
R660 T1172 T1174 themeOf COUP-TF,bind
R661 T1172 T1175 causeOf COUP-TF,regulate