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2_test

Id Subject Object Predicate Lexical cue
16462943-15302897-85761030 37-39 15302897 denotes 53
T20377 37-39 15302897 denotes 53

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20665 1495-1498 NN denotes min
T20664 1493-1494 CD denotes 5
T20663 1489-1492 IN denotes for
T20662 1486-1488 NN denotes °C
T20661 1483-1485 CD denotes 72
T20660 1480-1482 IN denotes at
T20659 1470-1479 NN denotes extension
T20658 1464-1469 JJ denotes final
T20657 1462-1463 DT denotes a
T20656 1457-1461 IN denotes with
T20655 1450-1456 VB denotes ending
T20654 1448-1449 -COMMA- denotes ,
T20653 1447-1448 NN denotes s
T20652 1444-1446 CD denotes 45
T20651 1440-1443 IN denotes for
T20650 1437-1439 NN denotes °C
T20649 1434-1436 CD denotes 72
T20648 1430-1433 CC denotes and
T20647 1428-1429 -COMMA- denotes ,
T20646 1427-1428 NN denotes s
T20645 1424-1426 CD denotes 30
T20644 1420-1423 IN denotes for
T20643 1417-1419 NN denotes °C
T20642 1414-1416 CD denotes 60
T20641 1412-1413 -COMMA- denotes ,
T20640 1411-1412 NN denotes s
T20639 1408-1410 CD denotes 30
T20638 1404-1407 IN denotes for
T20637 1401-1403 NN denotes °C
T20636 1398-1400 CD denotes 95
T20635 1395-1397 IN denotes at
T20634 1388-1394 NN denotes cycles
T20633 1385-1387 CD denotes 30
T20632 1382-1384 IN denotes by
T20631 1373-1381 VB denotes followed
T20630 1369-1372 NN denotes min
T20629 1366-1368 CD denotes 15
T20628 1362-1365 IN denotes for
T20627 1359-1361 NN denotes °C
T20626 1356-1358 CD denotes 95
T20625 1354-1355 -COLON- denotes :
T20624 1344-1354 NN denotes conditions
T20623 1334-1343 JJ denotes following
T20622 1330-1333 DT denotes the
T20621 1324-1329 IN denotes under
T20620 1314-1323 VB denotes performed
T20619 1310-1313 VB denotes was
T20618 1306-1309 NN denotes PCR
T20617 1303-1304 -RRB- denotes )
T20616 1279-1303 NN denotes 5′GCTTCACCACCAACCTCTTC3′
T20615 1277-1278 -COMMA- denotes ,
T20614 1270-1277 NN denotes MHB1689
T20613 1266-1269 CC denotes and
T20612 1264-1265 -COLON- denotes ;
T20611 1240-1264 NN denotes 5′CGAAGAATAAAAGGCCACCA3′
T20610 1238-1239 -COMMA- denotes ,
T20609 1231-1238 NN denotes MHB1688
T20608 1223-1230 NN denotes primers
T20607 1222-1223 -LRB- denotes (
T20606 1213-1221 NN denotes promoter
T20605 1210-1212 JJ denotes ɛy
T20604 1206-1209 DT denotes the
T20603 1203-1205 IN denotes of
T20602 1198-1202 CD denotes +140
T20601 1195-1197 TO denotes to
T20600 1191-1194 CD denotes −31
T20599 1179-1190 NN denotes nucleotides
T20598 1176-1178 TO denotes to
T20597 1162-1175 VB denotes corresponding
T20596 1160-1161 -COMMA- denotes ,
T20595 1152-1160 NN denotes amplicon
T20594 1145-1151 JJ denotes 172-bp
T20593 1143-1144 DT denotes a
T20592 1135-1142 VB denotes yielded
T20591 1131-1134 CC denotes and
T20590 1121-1130 VB denotes performed
T20589 1117-1120 VB denotes was
T20588 1108-1116 NN denotes promoter
T20587 1105-1107 JJ denotes ɛy
T20586 1101-1104 DT denotes the
T20585 1098-1100 IN denotes of
T20584 1084-1097 NN denotes amplification
T20583 1080-1083 NN denotes PCR
T20582 1070-1078 NN denotes reaction
T20581 1066-1069 NN denotes PCR
T20580 1062-1065 DT denotes the
T20579 1059-1061 IN denotes in
T20578 1050-1058 NN denotes template
T20577 1048-1049 DT denotes a
T20576 1045-1047 IN denotes as
T20575 1040-1044 VB denotes used
T20574 1036-1039 VB denotes was
T20573 1032-1035 NN denotes DNA
T20572 1013-1031 VB denotes immunoprecipitated
T20571 1010-1012 CC denotes or
T20570 1006-1009 NN denotes DNA
T20569 1000-1005 NN denotes Input
T20568 997-998 NN denotes h
T20567 995-996 CD denotes 4
T20566 991-994 IN denotes for
T20565 988-990 NN denotes °C
T20564 985-987 CD denotes 65
T20563 982-984 IN denotes at
T20562 977-981 NN denotes NaCl
T20561 975-976 NN denotes M
T20560 973-974 CD denotes 5
T20559 968-972 IN denotes with
T20558 959-967 VB denotes reversed
T20557 954-958 VB denotes were
T20556 942-953 NN denotes cross-links
T20555 934-941 NN denotes protein
T20554 930-933 NN denotes DNA
T20553 926-929 DT denotes the
T20552 922-925 CC denotes and
T20551 920-921 -COMMA- denotes ,
T20550 914-920 VB denotes eluted
T20549 909-913 VB denotes were
T20548 899-908 NN denotes complexes
T20547 880-898 NN denotes chromatin-antibody
T20546 876-879 DT denotes The
T20545 866-874 NN denotes controls
T20544 857-865 JJ denotes negative
T20543 854-856 IN denotes as
T20542 849-853 VB denotes used
T20541 844-848 VB denotes were
T20540 840-843 CD denotes two
T20539 835-839 JJ denotes last
T20538 831-834 DT denotes The
T20537 827-830 NNP denotes Ab.
T20536 819-826 IN denotes without
T20535 812-818 NN denotes sample
T20534 806-811 JJ denotes third
T20533 802-805 DT denotes the
T20532 798-801 CC denotes and
T20531 796-797 -COMMA- denotes ,
T20530 793-796 NN denotes IgG
T20529 786-792 NN denotes rabbit
T20528 779-785 JJ denotes normal
T20527 774-778 IN denotes with
T20526 766-773 VB denotes treated
T20525 759-765 JJ denotes second
T20524 757-758 DT denotes a
T20523 755-756 -COMMA- denotes ,
T20522 746-755 NN denotes anti-Sox6
T20521 741-745 IN denotes with
T20520 733-740 VB denotes treated
T20519 726-732 NN denotes sample
T20518 722-725 CD denotes one
T20517 720-721 -COLON- denotes :
T20516 714-720 NN denotes thirds
T20515 709-713 IN denotes into
T20514 703-708 VB denotes split
T20513 698-702 VB denotes were
T20512 690-697 NN denotes samples
T20511 686-689 DT denotes the
T20510 684-685 -COMMA- denotes ,
T20509 673-684 NN denotes preclearing
T20508 663-672 VB denotes Following
T20507 660-661 -RRB- denotes )
T20506 654-660 NNP denotes States
T20505 647-653 NNP denotes United
T20504 645-646 -COMMA- denotes ,
T20503 639-645 NNP denotes Jersey
T20502 635-638 NNP denotes New
T20501 633-634 -COMMA- denotes ,
T20500 623-633 NNP denotes Piscataway
T20499 621-622 -COMMA- denotes ,
T20498 610-621 NNP denotes Biosciences
T20497 601-609 NNP denotes Amersham
T20496 600-601 -LRB- denotes (
T20495 588-599 NN denotes A-Sepharose
T20494 580-587 NN denotes protein
T20493 575-579 IN denotes with
T20492 564-574 VB denotes precleared
T20491 560-563 VB denotes was
T20490 553-559 NN denotes sample
T20489 543-552 VB denotes remaining
T20488 539-542 DT denotes the
T20487 535-538 CC denotes and
T20486 533-534 -COMMA- denotes ,
T20485 526-533 NN denotes control
T20484 520-525 NN denotes input
T20483 516-519 IN denotes for
T20482 510-515 RB denotes aside
T20481 506-509 VB denotes set
T20480 502-505 VB denotes was
T20479 495-501 NN denotes sample
T20478 491-494 DT denotes the
T20477 488-490 IN denotes of
T20476 478-487 NN denotes One-tenth
T20475 474-476 NN denotes bp
T20474 470-473 CD denotes 600
T20473 466-469 CC denotes and
T20472 462-465 CD denotes 200
T20471 459-461 TO denotes to
T20470 449-458 VB denotes sonicated
T20469 444-448 VB denotes were
T20468 434-443 NN denotes complexes
T20467 422-433 JJ denotes DNA-protein
T20466 417-420 NN denotes min
T20465 414-416 CD denotes 10
T20464 410-413 IN denotes for
T20463 406-409 NN denotes ice
T20462 403-405 IN denotes on
T20461 393-402 VB denotes incubated
T20460 389-392 CC denotes and
T20459 387-388 -COMMA- denotes ,
T20458 377-387 NN denotes inhibitors
T20457 368-376 NN denotes protease
T20456 357-367 VB denotes containing
T20455 350-356 NN denotes buffer
T20454 344-349 NN denotes lysis
T20453 340-343 NN denotes SDS
T20452 338-339 DT denotes a
T20451 335-337 IN denotes in
T20450 323-334 VB denotes resuspended
T20449 321-322 -COMMA- denotes ,
T20448 319-321 NN denotes °C
T20447 317-318 CD denotes 4
T20446 314-316 IN denotes at
T20445 299-313 NN denotes centrifugation
T20444 296-298 IN denotes by
T20443 286-295 VB denotes collected
T20442 284-285 -COMMA- denotes ,
T20441 274-284 NN denotes inhibitors
T20440 265-273 NN denotes protease
T20439 254-264 VB denotes containing
T20438 249-253 NN denotes EDTA
T20437 247-248 NN denotes %
T20436 244-247 CD denotes 0.1
T20435 239-243 IN denotes with
T20434 230-238 NN denotes solution
T20433 225-229 NN denotes salt
T20432 216-224 JJ denotes balanced
T20431 214-215 POS denotes '
T20430 209-214 NNP denotes Hanks
T20429 206-208 CD denotes 1×
T20428 197-205 JJ denotes ice-cold
T20427 194-196 IN denotes in
T20426 187-193 VB denotes rinsed
T20425 185-186 -COMMA- denotes ,
T20424 183-185 NN denotes °C
T20423 180-182 CD denotes 37
T20422 177-179 IN denotes at
T20421 173-176 NN denotes min
T20420 170-172 CD denotes 10
T20419 166-169 IN denotes for
T20418 153-165 NN denotes formaldehyde
T20417 151-152 NN denotes %
T20416 150-151 CD denotes 1
T20415 145-149 IN denotes with
T20414 137-144 VB denotes treated
T20413 132-136 VB denotes were
T20412 127-131 NN denotes mice
T20411 124-126 JJ denotes WT
T20410 115-123 JJ denotes 15.5-dpc
T20409 109-114 CD denotes three
T20408 104-108 IN denotes from
T20407 98-103 NN denotes cells
T20406 92-97 NN denotes liver
T20405 86-91 JJ denotes fetal
T20404 83-85 CC denotes or
T20403 81-82 -RRB- denotes )
T20402 78-81 CD denotes 107
T20401 76-77 NN denotes ×
T20400 74-75 CD denotes 4
T20399 73-74 -LRB- denotes (
T20398 67-72 NN denotes cells
T20397 63-66 NN denotes MEL
T20396 58-62 IN denotes from
T20395 52-57 NN denotes Cells
T20394 50-51 -COLON- denotes :
T20393 45-50 NN denotes brief
T20392 42-44 IN denotes in
T20391 40-41 -COMMA- denotes ,
T20390 39-40 -RRB- denotes ]
T20389 37-39 CD denotes 53
T20388 36-37 -LRB- denotes [
T20387 28-35 NNP denotes Nouzova
T20386 25-27 IN denotes by
T20385 15-24 VB denotes described
T20384 12-14 IN denotes As
T20383 5-10 NN denotes assay
T20382 0-4 NN denotes ChIP
R14488 T20383 T20382 arg1Of assay,ChIP
R14489 T20385 T20384 arg2Of described,As
R14490 T20387 T20385 arg1Of Nouzova,described
R14491 T20387 T20386 arg2Of Nouzova,by
R14492 T20387 T20388 arg1Of Nouzova,[
R14493 T20387 T20391 arg1Of Nouzova,","
R14494 T20387 T20392 arg1Of Nouzova,in
R14495 T20387 T20394 arg1Of Nouzova,:
R14496 T20389 T20388 arg2Of 53,[
R14497 T20390 T20388 arg3Of ],[
R14498 T20393 T20392 arg2Of brief,in
R14499 T20395 T20396 arg1Of Cells,from
R14500 T20395 T20413 arg1Of Cells,were
R14501 T20395 T20414 arg2Of Cells,treated
R14502 T20398 T20397 arg1Of cells,MEL
R14503 T20398 T20399 arg1Of cells,(
R14504 T20398 T20404 arg1Of cells,or
R14505 T20401 T20399 arg2Of ×,(
R14506 T20401 T20400 arg1Of ×,4
R14507 T20401 T20402 arg1Of ×,107
R14508 T20403 T20399 arg3Of ),(
R14509 T20404 T20396 arg2Of or,from
R14510 T20407 T20404 arg2Of cells,or
R14511 T20407 T20405 arg1Of cells,fetal
R14512 T20407 T20406 arg1Of cells,liver
R14513 T20407 T20408 arg1Of cells,from
R14514 T20412 T20408 arg2Of mice,from
R14515 T20412 T20409 arg1Of mice,three
R14516 T20412 T20410 arg1Of mice,15.5-dpc
R14517 T20412 T20411 arg1Of mice,WT
R14518 T20414 T20413 arg2Of treated,were
R14519 T20414 T20415 arg1Of treated,with
R14520 T20416 T20417 arg1Of 1,%
R14521 T20418 T20415 arg2Of formaldehyde,with
R14522 T20418 T20416 arg1Of formaldehyde,1
R14523 T20418 T20419 arg1Of formaldehyde,for
R14524 T20421 T20419 arg2Of min,for
R14525 T20421 T20420 arg1Of min,10
R14526 T20421 T20422 arg1Of min,at
R14527 T20421 T20425 arg1Of min,","
R14528 T20421 T20426 arg2Of min,rinsed
R14529 T20421 T20435 arg1Of min,with
R14530 T20424 T20422 arg2Of °C,at
R14531 T20424 T20423 arg1Of °C,37
R14532 T20426 T20427 arg1Of rinsed,in
R14533 T20430 T20431 arg2Of Hanks,'
R14534 T20434 T20427 arg2Of solution,in
R14535 T20434 T20428 arg1Of solution,ice-cold
R14536 T20434 T20429 arg1Of solution,1×
R14537 T20434 T20431 arg1Of solution,'
R14538 T20434 T20432 arg1Of solution,balanced
R14539 T20434 T20433 arg1Of solution,salt
R14540 T20436 T20437 arg1Of 0.1,%
R14541 T20438 T20435 arg2Of EDTA,with
R14542 T20438 T20436 arg1Of EDTA,0.1
R14543 T20438 T20439 arg1Of EDTA,containing
R14544 T20441 T20439 arg2Of inhibitors,containing
R14545 T20441 T20440 arg1Of inhibitors,protease
R14546 T20441 T20442 arg1Of inhibitors,","
R14547 T20441 T20443 arg2Of inhibitors,collected
R14548 T20441 T20450 arg2Of inhibitors,resuspended
R14549 T20441 T20461 arg2Of inhibitors,incubated
R14550 T20445 T20443 arg1Of centrifugation,collected
R14551 T20445 T20444 arg2Of centrifugation,by
R14552 T20445 T20446 arg1Of centrifugation,at
R14553 T20448 T20446 arg2Of °C,at
R14554 T20448 T20447 arg1Of °C,4
R14555 T20450 T20451 arg1Of resuspended,in
R14556 T20450 T20460 arg1Of resuspended,and
R14557 T20455 T20451 arg2Of buffer,in
R14558 T20455 T20452 arg1Of buffer,a
R14559 T20455 T20453 arg1Of buffer,SDS
R14560 T20455 T20454 arg1Of buffer,lysis
R14561 T20455 T20456 arg1Of buffer,containing
R14562 T20458 T20456 arg2Of inhibitors,containing
R14563 T20458 T20457 arg1Of inhibitors,protease
R14564 T20460 T20449 arg1Of and,","
R14565 T20460 T20459 arg1Of and,","
R14566 T20461 T20460 arg2Of incubated,and
R14567 T20461 T20462 arg1Of incubated,on
R14568 T20461 T20464 arg1Of incubated,for
R14569 T20463 T20462 arg2Of ice,on
R14570 T20466 T20464 arg2Of min,for
R14571 T20466 T20465 arg1Of min,10
R14572 T20468 T20467 arg1Of complexes,DNA-protein
R14573 T20468 T20469 arg1Of complexes,were
R14574 T20468 T20470 arg2Of complexes,sonicated
R14575 T20470 T20469 arg2Of sonicated,were
R14576 T20470 T20471 arg1Of sonicated,to
R14577 T20472 T20473 arg1Of 200,and
R14578 T20474 T20473 arg2Of 600,and
R14579 T20475 T20471 arg2Of bp,to
R14580 T20475 T20472 arg1Of bp,200
R14581 T20475 T20474 arg1Of bp,600
R14582 T20476 T20477 arg1Of One-tenth,of
R14583 T20476 T20480 arg1Of One-tenth,was
R14584 T20476 T20481 arg2Of One-tenth,set
R14585 T20479 T20477 arg2Of sample,of
R14586 T20479 T20478 arg1Of sample,the
R14587 T20481 T20480 arg2Of set,was
R14588 T20481 T20482 arg1Of set,aside
R14589 T20481 T20483 arg1Of set,for
R14590 T20481 T20487 arg1Of set,and
R14591 T20485 T20483 arg2Of control,for
R14592 T20485 T20484 arg1Of control,input
R14593 T20487 T20486 arg1Of and,","
R14594 T20487 T20496 arg1Of and,(
R14595 T20490 T20488 arg1Of sample,the
R14596 T20490 T20489 arg1Of sample,remaining
R14597 T20490 T20491 arg1Of sample,was
R14598 T20490 T20492 arg2Of sample,precleared
R14599 T20492 T20487 arg2Of precleared,and
R14600 T20492 T20491 arg2Of precleared,was
R14601 T20492 T20493 arg1Of precleared,with
R14602 T20495 T20493 arg2Of A-Sepharose,with
R14603 T20495 T20494 arg1Of A-Sepharose,protein
R14604 T20498 T20497 arg1Of Biosciences,Amersham
R14605 T20498 T20499 arg1Of Biosciences,","
R14606 T20499 T20501 arg1Of ",",","
R14607 T20500 T20499 arg2Of Piscataway,","
R14608 T20501 T20504 arg1Of ",",","
R14609 T20503 T20501 arg2Of Jersey,","
R14610 T20503 T20502 arg1Of Jersey,New
R14611 T20504 T20496 arg2Of ",",(
R14612 T20506 T20504 arg2Of States,","
R14613 T20506 T20505 arg1Of States,United
R14614 T20507 T20496 arg3Of ),(
R14615 T20509 T20508 arg2Of preclearing,Following
R14616 T20512 T20511 arg1Of samples,the
R14617 T20512 T20513 arg1Of samples,were
R14618 T20512 T20514 arg2Of samples,split
R14619 T20514 T20513 arg2Of split,were
R14620 T20514 T20515 arg1Of split,into
R14621 T20514 T20532 arg1Of split,and
R14622 T20516 T20515 arg2Of thirds,into
R14623 T20516 T20517 arg1Of thirds,:
R14624 T20519 T20517 arg2Of sample,:
R14625 T20519 T20518 arg1Of sample,one
R14626 T20519 T20520 arg2Of sample,treated
R14627 T20520 T20521 arg1Of treated,with
R14628 T20522 T20521 arg2Of anti-Sox6,with
R14629 T20522 T20523 arg1Of anti-Sox6,","
R14630 T20525 T20523 arg2Of second,","
R14631 T20525 T20524 arg1Of second,a
R14632 T20525 T20526 arg2Of second,treated
R14633 T20526 T20527 arg1Of treated,with
R14634 T20530 T20527 arg2Of IgG,with
R14635 T20530 T20528 arg1Of IgG,normal
R14636 T20530 T20529 arg1Of IgG,rabbit
R14637 T20532 T20508 arg1Of and,Following
R14638 T20532 T20510 arg1Of and,","
R14639 T20532 T20531 arg1Of and,","
R14640 T20535 T20533 arg1Of sample,the
R14641 T20535 T20534 arg1Of sample,third
R14642 T20535 T20536 arg1Of sample,without
R14643 T20535 T20541 arg1Of sample,were
R14644 T20535 T20542 arg2Of sample,used
R14645 T20540 T20536 arg2Of two,without
R14646 T20540 T20537 arg1Of two,Ab.
R14647 T20540 T20538 arg1Of two,The
R14648 T20540 T20539 arg1Of two,last
R14649 T20542 T20532 arg2Of used,and
R14650 T20542 T20541 arg2Of used,were
R14651 T20542 T20543 arg1Of used,as
R14652 T20545 T20543 arg2Of controls,as
R14653 T20545 T20544 arg1Of controls,negative
R14654 T20548 T20546 arg1Of complexes,The
R14655 T20548 T20547 arg1Of complexes,chromatin-antibody
R14656 T20548 T20549 arg1Of complexes,were
R14657 T20548 T20550 arg2Of complexes,eluted
R14658 T20550 T20549 arg2Of eluted,were
R14659 T20550 T20552 arg1Of eluted,and
R14660 T20552 T20551 arg1Of and,","
R14661 T20556 T20553 arg1Of cross-links,the
R14662 T20556 T20554 arg1Of cross-links,DNA
R14663 T20556 T20555 arg1Of cross-links,protein
R14664 T20556 T20557 arg1Of cross-links,were
R14665 T20556 T20558 arg2Of cross-links,reversed
R14666 T20558 T20552 arg2Of reversed,and
R14667 T20558 T20557 arg2Of reversed,were
R14668 T20558 T20559 arg1Of reversed,with
R14669 T20558 T20563 arg1Of reversed,at
R14670 T20560 T20561 arg1Of 5,M
R14671 T20562 T20559 arg2Of NaCl,with
R14672 T20562 T20560 arg1Of NaCl,5
R14673 T20565 T20563 arg2Of °C,at
R14674 T20565 T20564 arg1Of °C,65
R14675 T20565 T20566 arg1Of °C,for
R14676 T20568 T20566 arg2Of h,for
R14677 T20568 T20567 arg1Of h,4
R14678 T20570 T20569 arg1Of DNA,Input
R14679 T20570 T20571 arg1Of DNA,or
R14680 T20571 T20574 arg1Of or,was
R14681 T20571 T20575 arg2Of or,used
R14682 T20573 T20571 arg2Of DNA,or
R14683 T20573 T20572 arg2Of DNA,immunoprecipitated
R14684 T20575 T20574 arg2Of used,was
R14685 T20575 T20576 arg1Of used,as
R14686 T20578 T20576 arg2Of template,as
R14687 T20578 T20577 arg1Of template,a
R14688 T20578 T20579 arg1Of template,in
R14689 T20582 T20579 arg2Of reaction,in
R14690 T20582 T20580 arg1Of reaction,the
R14691 T20582 T20581 arg1Of reaction,PCR
R14692 T20584 T20583 arg1Of amplification,PCR
R14693 T20584 T20585 arg1Of amplification,of
R14694 T20584 T20589 arg1Of amplification,was
R14695 T20584 T20590 arg2Of amplification,performed
R14696 T20584 T20592 arg1Of amplification,yielded
R14697 T20588 T20585 arg2Of promoter,of
R14698 T20588 T20586 arg1Of promoter,the
R14699 T20588 T20587 arg1Of promoter,ɛy
R14700 T20590 T20589 arg2Of performed,was
R14701 T20590 T20591 arg1Of performed,and
R14702 T20591 T20596 arg1Of and,","
R14703 T20591 T20597 arg1Of and,corresponding
R14704 T20592 T20591 arg2Of yielded,and
R14705 T20595 T20592 arg2Of amplicon,yielded
R14706 T20595 T20593 arg1Of amplicon,a
R14707 T20595 T20594 arg1Of amplicon,172-bp
R14708 T20598 T20597 arg2Of to,corresponding
R14709 T20599 T20598 arg2Of nucleotides,to
R14710 T20599 T20600 arg1Of nucleotides,−31
R14711 T20600 T20601 arg1Of −31,to
R14712 T20602 T20601 arg2Of +140,to
R14713 T20602 T20603 arg1Of +140,of
R14714 T20602 T20607 arg1Of +140,(
R14715 T20606 T20603 arg2Of promoter,of
R14716 T20606 T20604 arg1Of promoter,the
R14717 T20606 T20605 arg1Of promoter,ɛy
R14718 T20609 T20610 arg1Of MHB1688,","
R14719 T20610 T20613 arg1Of ",",and
R14720 T20611 T20610 arg2Of 5′CGAAGAATAAAAGGCCACCA3′,","
R14721 T20613 T20607 arg2Of and,(
R14722 T20613 T20608 arg1Of and,primers
R14723 T20613 T20612 arg1Of and,;
R14724 T20613 T20615 arg1Of and,","
R14725 T20614 T20613 arg2Of MHB1689,and
R14726 T20616 T20615 arg2Of 5′GCTTCACCACCAACCTCTTC3′,","
R14727 T20617 T20607 arg3Of ),(
R14728 T20618 T20619 arg1Of PCR,was
R14729 T20618 T20620 arg2Of PCR,performed
R14730 T20620 T20619 arg2Of performed,was
R14731 T20620 T20621 arg1Of performed,under
R14732 T20620 T20625 arg1Of performed,:
R14733 T20624 T20621 arg2Of conditions,under
R14734 T20624 T20622 arg1Of conditions,the
R14735 T20624 T20623 arg1Of conditions,following
R14736 T20627 T20626 arg1Of °C,95
R14737 T20627 T20628 arg1Of °C,for
R14738 T20627 T20631 arg1Of °C,followed
R14739 T20627 T20655 arg1Of °C,ending
R14740 T20630 T20628 arg2Of min,for
R14741 T20630 T20629 arg1Of min,15
R14742 T20631 T20632 arg1Of followed,by
R14743 T20631 T20635 arg1Of followed,at
R14744 T20631 T20638 arg1Of followed,for
R14745 T20631 T20641 arg1Of followed,","
R14746 T20631 T20651 arg1Of followed,for
R14747 T20631 T20654 arg1Of followed,","
R14748 T20631 T20655 modOf followed,ending
R14749 T20634 T20632 arg2Of cycles,by
R14750 T20634 T20633 arg1Of cycles,30
R14751 T20637 T20635 arg2Of °C,at
R14752 T20637 T20636 arg1Of °C,95
R14753 T20640 T20638 arg2Of s,for
R14754 T20640 T20639 arg1Of s,30
R14755 T20643 T20642 arg1Of °C,60
R14756 T20643 T20644 arg1Of °C,for
R14757 T20643 T20648 arg1Of °C,and
R14758 T20646 T20644 arg2Of s,for
R14759 T20646 T20645 arg1Of s,30
R14760 T20648 T20631 arg2Of and,followed
R14761 T20648 T20647 arg1Of and,","
R14762 T20650 T20648 arg2Of °C,and
R14763 T20650 T20649 arg1Of °C,72
R14764 T20653 T20651 arg2Of s,for
R14765 T20653 T20652 arg1Of s,45
R14766 T20655 T20656 arg1Of ending,with
R14767 T20655 T20663 arg1Of ending,for
R14768 T20659 T20656 arg2Of extension,with
R14769 T20659 T20657 arg1Of extension,a
R14770 T20659 T20658 arg1Of extension,final
R14771 T20659 T20660 arg1Of extension,at
R14772 T20662 T20660 arg2Of °C,at
R14773 T20662 T20661 arg1Of °C,72
R14774 T20665 T20663 arg2Of min,for
R14775 T20665 T20664 arg1Of min,5

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T20360 1210-1212 Protein denotes ɛy
T20359 1105-1107 Protein denotes ɛy
T20358 751-755 Protein denotes Sox6
T20357 580-589 Protein denotes protein A

UBERON-AE

Id Subject Object Predicate Lexical cue
T20340 1470-1479 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extension
T20339 92-97 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver

GO-BP

Id Subject Object Predicate Lexical cue
T20352 344-349 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis

GO-MF

Id Subject Object Predicate Lexical cue
T20361 890-898 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T20363 98-103 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T20362 67-72 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T20370 890-898 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T20369 890-898 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T20368 880-889 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T20367 426-443 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes
T20366 422-443 http://purl.obolibrary.org/obo/GO_0097522 denotes DNA-protein complexes
T20365 422-443 http://purl.obolibrary.org/obo/GO_0032993 denotes DNA-protein complexes
T20364 422-443 http://purl.obolibrary.org/obo/GO_0001114 denotes DNA-protein complexes

sentences

Id Subject Object Predicate Lexical cue
T20351 1356-1499 Sentence denotes 95 °C for 15 min followed by 30 cycles at 95 °C for 30 s, 60 °C for 30 s, and 72 °C for 45 s, ending with a final extension at 72 °C for 5 min.
T20350 1306-1355 Sentence denotes PCR was performed under the following conditions:
T20349 1080-1305 Sentence denotes PCR amplification of the ɛy promoter was performed and yielded a 172-bp amplicon, corresponding to nucleotides −31 to +140 of the ɛy promoter (primers MHB1688, 5′CGAAGAATAAAAGGCCACCA3′; and MHB1689, 5′GCTTCACCACCAACCTCTTC3′).
T20348 1000-1079 Sentence denotes Input DNA or immunoprecipitated DNA was used as a template in the PCR reaction.
T20347 876-999 Sentence denotes The chromatin-antibody complexes were eluted, and the DNA protein cross-links were reversed with 5 M NaCl at 65 °C for 4 h.
T20346 663-875 Sentence denotes Following preclearing, the samples were split into thirds: one sample treated with anti-Sox6, a second treated with normal rabbit IgG, and the third sample without Ab. The last two were used as negative controls.
T20345 478-662 Sentence denotes One-tenth of the sample was set aside for input control, and the remaining sample was precleared with protein A-Sepharose (Amersham Biosciences, Piscataway, New Jersey, United States).
T20344 422-477 Sentence denotes DNA-protein complexes were sonicated to 200 and 600 bp.
T20343 52-421 Sentence denotes Cells from MEL cells (4 × 107) or fetal liver cells from three 15.5-dpc WT mice were treated with 1% formaldehyde for 10 min at 37 °C, rinsed in ice-cold 1× Hanks' balanced salt solution with 0.1% EDTA containing protease inhibitors, collected by centrifugation at 4 °C, resuspended in a SDS lysis buffer containing protease inhibitors, and incubated on ice for 10 min.
T20342 12-51 Sentence denotes As described by Nouzova [53], in brief:
T20341 0-11 Sentence denotes ChIP assay.
T330 0-11 Sentence denotes ChIP assay.
T331 12-51 Sentence denotes As described by Nouzova [53], in brief:
T332 52-421 Sentence denotes Cells from MEL cells (4 × 107) or fetal liver cells from three 15.5-dpc WT mice were treated with 1% formaldehyde for 10 min at 37 °C, rinsed in ice-cold 1× Hanks' balanced salt solution with 0.1% EDTA containing protease inhibitors, collected by centrifugation at 4 °C, resuspended in a SDS lysis buffer containing protease inhibitors, and incubated on ice for 10 min.
T333 422-477 Sentence denotes DNA-protein complexes were sonicated to 200 and 600 bp.
T334 478-662 Sentence denotes One-tenth of the sample was set aside for input control, and the remaining sample was precleared with protein A-Sepharose (Amersham Biosciences, Piscataway, New Jersey, United States).
T335 663-830 Sentence denotes Following preclearing, the samples were split into thirds: one sample treated with anti-Sox6, a second treated with normal rabbit IgG, and the third sample without Ab.
T336 831-875 Sentence denotes The last two were used as negative controls.
T337 876-999 Sentence denotes The chromatin-antibody complexes were eluted, and the DNA protein cross-links were reversed with 5 M NaCl at 65 °C for 4 h.
T338 1000-1079 Sentence denotes Input DNA or immunoprecipitated DNA was used as a template in the PCR reaction.
T339 1080-1305 Sentence denotes PCR amplification of the ɛy promoter was performed and yielded a 172-bp amplicon, corresponding to nucleotides −31 to +140 of the ɛy promoter (primers MHB1688, 5′CGAAGAATAAAAGGCCACCA3′; and MHB1689, 5′GCTTCACCACCAACCTCTTC3′).
T340 1306-1355 Sentence denotes PCR was performed under the following conditions:
T341 1356-1499 Sentence denotes 95 °C for 15 min followed by 30 cycles at 95 °C for 30 s, 60 °C for 30 s, and 72 °C for 45 s, ending with a final extension at 72 °C for 5 min.

simple1

Id Subject Object Predicate Lexical cue
T20381 1210-1212 Protein denotes ɛy
T20380 1105-1107 Protein denotes ɛy
T20379 751-755 Protein denotes Sox6
T20378 580-589 Protein denotes protein A

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T21019 580-589 Protein denotes protein A
T21022 1210-1212 Protein denotes ɛy
T21021 1105-1107 Protein denotes ɛy
T21020 751-755 Protein denotes Sox6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20669 1210-1212 Protein denotes ɛy
T20668 1105-1107 Protein denotes ɛy
T20667 751-755 Protein denotes Sox6
T20666 580-589 Protein denotes protein A

DLUT931

Id Subject Object Predicate Lexical cue
T20673 1210-1212 Protein denotes ɛy
T20672 1105-1107 Protein denotes ɛy
T20671 751-755 Protein denotes Sox6
T20670 580-589 Protein denotes protein A

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21018 926-954 Localization denotes the DNA protein cross-links
T21017 45-57 Entity denotes brief: Cells
T21016 1013-1035 Entity denotes immunoprecipitated DNA
T21015 109-131 Protein denotes three 15.5-dpc WT mice
T21014 995-1009 Entity denotes 4 h. Input DNA
T21013 746-797 Protein denotes anti-Sox6, a second treated with normal rabbit IgG,
T21012 1176-1221 Entity denotes to nucleotides −31 to +140 of the ɛy promoter
T21011 890-898 Protein denotes antibody
T21010 197-205 Entity denotes ice-cold
T21009 403-409 Entity denotes on ice
T21008 1062-1078 Protein denotes the PCR reaction
T21007 150-176 Entity denotes 1% formaldehyde for 10 min
T21006 876-908 Entity denotes The chromatin-antibody complexes
T21005 973-987 Entity denotes 5 M NaCl at 65
T21004 880-889 Entity denotes chromatin
T21003 930-933 Entity denotes DNA
T21002 368-387 Protein denotes protease inhibitors
T21001 249-253 Entity denotes EDTA
T21000 1080-1083 Protein denotes PCR
T20999 926-953 Protein denotes the DNA protein cross-links
T20998 1306-1309 Protein denotes PCR
T20997 1210-1212 Protein denotes ɛy
T20996 1105-1107 Protein denotes ɛy
T20995 1098-1116 Entity denotes of the ɛy promoter
T20994 590-599 Entity denotes Sepharose
T20993 338-388 Protein denotes a SDS lysis buffer containing protease inhibitors,
T20992 244-284 Protein denotes 0.1% EDTA containing protease inhibitors
T20991 422-443 Entity denotes DNA-protein complexes
T20990 1206-1221 Entity denotes the ɛy promoter
R15085 T20990 T20997 partOf the ɛy promoter,ɛy
R15086 T20995 T20996 partOf of the ɛy promoter,ɛy
R15087 T20999 T21018 themeOf the DNA protein cross-links,the DNA protein cross-links
R15088 T21003 T21018 locationOf DNA,the DNA protein cross-links

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20986 1498-1499 . denotes .
T20985 1495-1498 NN denotes min
T20984 1493-1494 CD denotes 5
T20983 1489-1492 IN denotes for
T20982 1487-1488 NNP denotes C
T20981 1486-1487 CD denotes °
T20980 1483-1485 CD denotes 72
T20979 1480-1482 IN denotes at
T20978 1470-1479 NN denotes extension
T20977 1464-1469 JJ denotes final
T20976 1462-1463 DT denotes a
T20975 1457-1461 IN denotes with
T20974 1450-1456 VBG denotes ending
T20973 1448-1449 , denotes ,
T20972 1447-1448 PRP denotes s
T20971 1444-1446 CD denotes 45
T20970 1440-1443 IN denotes for
T20969 1438-1439 NNP denotes C
T20968 1437-1438 NN denotes °
T20967 1434-1436 CD denotes 72
T20966 1430-1433 CC denotes and
T20965 1428-1429 , denotes ,
T20964 1427-1428 PRP denotes s
T20963 1424-1426 CD denotes 30
T20962 1420-1423 IN denotes for
T20961 1418-1419 NNP denotes C
T20960 1417-1418 NN denotes °
T20959 1414-1416 CD denotes 60
T20958 1412-1413 , denotes ,
T20957 1411-1412 PRP denotes s
T20956 1408-1410 CD denotes 30
T20955 1404-1407 IN denotes for
T20954 1402-1403 NNP denotes C
T20953 1401-1402 CD denotes °
T20952 1398-1400 CD denotes 95
T20951 1395-1397 IN denotes at
T20950 1388-1394 NNS denotes cycles
T20949 1385-1387 CD denotes 30
T20948 1382-1384 IN denotes by
T20947 1373-1381 VBN denotes followed
T20946 1369-1372 NN denotes min
T20945 1366-1368 CD denotes 15
T20944 1362-1365 IN denotes for
T20943 1360-1361 NNP denotes C
T20942 1359-1360 NN denotes °
T20941 1356-1358 CD denotes 95
T20940 1354-1355 : denotes :
T20939 1344-1354 NNS denotes conditions
T20938 1334-1343 JJ denotes following
T20937 1330-1333 DT denotes the
T20936 1324-1329 IN denotes under
T20935 1314-1323 VBN denotes performed
T20934 1310-1313 VBD denotes was
T20933 1306-1309 NNP denotes PCR
T20932 1304-1305 . denotes .
T20931 1303-1304 -RRB- denotes )
T20930 1302-1303 NNP denotes ′
T20929 1281-1302 NNP denotes GCTTCACCACCAACCTCTTC3
T20928 1280-1281 NN denotes ′
T20927 1279-1280 CD denotes 5
T20926 1277-1278 , denotes ,
T20925 1270-1277 NNP denotes MHB1689
T20924 1266-1269 CC denotes and
T20923 1264-1265 : denotes ;
T20922 1263-1264 NN denotes ′
T20921 1242-1263 CD denotes CGAAGAATAAAAGGCCACCA3
T20920 1241-1242 NN denotes ′
T20919 1240-1241 CD denotes 5
T20918 1238-1239 , denotes ,
T20917 1231-1238 NNP denotes MHB1688
T20916 1223-1230 NNS denotes primers
T20915 1222-1223 -LRB- denotes (
T20914 1213-1221 NN denotes promoter
T20913 1210-1212 JJ denotes ɛy
T20912 1206-1209 DT denotes the
T20911 1203-1205 IN denotes of
T20910 1198-1202 CD denotes +140
T20909 1195-1197 TO denotes to
T20908 1192-1194 CD denotes 31
T20907 1191-1192 VBP denotes −
T20906 1179-1190 NNS denotes nucleotides
T20905 1176-1178 TO denotes to
T20904 1162-1175 JJ denotes corresponding
T20903 1160-1161 , denotes ,
T20902 1152-1160 NN denotes amplicon
T20901 1145-1151 JJ denotes 172-bp
T20900 1143-1144 DT denotes a
T20899 1135-1142 VBD denotes yielded
T20898 1131-1134 CC denotes and
T20897 1121-1130 VBN denotes performed
T20896 1117-1120 VBD denotes was
T20895 1108-1116 NN denotes promoter
T20894 1105-1107 JJ denotes ɛy
T20893 1101-1104 DT denotes the
T20892 1098-1100 IN denotes of
T20891 1084-1097 NN denotes amplification
T20890 1080-1083 NNP denotes PCR
T20889 1078-1079 . denotes .
T20888 1070-1078 NN denotes reaction
T20887 1066-1069 NNP denotes PCR
T20886 1062-1065 DT denotes the
T20885 1059-1061 IN denotes in
T20884 1050-1058 NN denotes template
T20883 1048-1049 DT denotes a
T20882 1045-1047 IN denotes as
T20881 1040-1044 VBN denotes used
T20880 1036-1039 VBD denotes was
T20879 1032-1035 NN denotes DNA
T20878 1013-1031 JJ denotes immunoprecipitated
T20877 1010-1012 CC denotes or
T20876 1006-1009 NNP denotes DNA
T20875 1000-1005 NNP denotes Input
T20874 997-999 NN denotes h.
T20873 995-996 CD denotes 4
T20872 991-994 IN denotes for
T20871 989-990 NNP denotes C
T20870 988-989 CD denotes °
T20869 985-987 CD denotes 65
T20868 982-984 IN denotes at
T20867 977-981 NNP denotes NaCl
T20866 975-976 NNP denotes M
T20865 973-974 CD denotes 5
T20864 968-972 IN denotes with
T20863 959-967 VBN denotes reversed
T20862 954-958 VBD denotes were
T20861 942-953 NNS denotes cross-links
T20860 934-941 NN denotes protein
T20859 930-933 NNP denotes DNA
T20858 926-929 DT denotes the
T20857 922-925 CC denotes and
T20856 920-921 , denotes ,
T20855 914-920 VBN denotes eluted
T20854 909-913 VBD denotes were
T20853 899-908 NNS denotes complexes
T20852 880-898 JJ denotes chromatin-antibody
T20851 876-879 DT denotes The
T20850 874-875 . denotes .
T20849 866-874 NNS denotes controls
T20848 857-865 JJ denotes negative
T20847 854-856 IN denotes as
T20846 849-853 VBN denotes used
T20845 844-848 VBD denotes were
T20844 840-843 CD denotes two
T20843 835-839 JJ denotes last
T20842 831-834 DT denotes The
T20841 829-830 . denotes .
T20840 827-829 NNP denotes Ab
T20839 819-826 IN denotes without
T20838 812-818 NN denotes sample
T20837 806-811 JJ denotes third
T20836 802-805 DT denotes the
T20835 798-801 CC denotes and
T20834 796-797 , denotes ,
T20833 793-796 NNP denotes IgG
T20832 786-792 NN denotes rabbit
T20831 779-785 JJ denotes normal
T20830 774-778 IN denotes with
T20829 766-773 VBN denotes treated
T20828 759-765 JJ denotes second
T20827 757-758 DT denotes a
T20826 755-756 , denotes ,
T20825 746-755 JJ denotes anti-Sox6
T20824 741-745 IN denotes with
T20823 733-740 VBN denotes treated
T20822 726-732 NN denotes sample
T20821 722-725 CD denotes one
T20820 720-721 : denotes :
T20819 714-720 NNS denotes thirds
T20818 709-713 IN denotes into
T20817 703-708 VBN denotes split
T20816 698-702 VBD denotes were
T20815 690-697 NNS denotes samples
T20814 686-689 DT denotes the
T20813 684-685 , denotes ,
T20812 673-684 NN denotes preclearing
T20811 663-672 VBG denotes Following
T20810 661-662 . denotes .
T20809 660-661 -RRB- denotes )
T20808 654-660 NNPS denotes States
T20807 647-653 NNP denotes United
T20806 645-646 , denotes ,
T20805 639-645 NNP denotes Jersey
T20804 635-638 NNP denotes New
T20689 42-44 IN denotes in
T20688 40-41 , denotes ,
T20687 39-40 NNP denotes ]
T20686 37-39 CD denotes 53
T20685 36-37 NNP denotes [
T20684 28-35 NNP denotes Nouzova
T20683 25-27 IN denotes by
T20682 15-24 VBN denotes described
T20681 12-14 IN denotes As
T20680 10-11 . denotes .
T20679 5-10 NN denotes assay
T20678 0-4 NN denotes ChIP
T20803 633-634 , denotes ,
T20802 623-633 NNP denotes Piscataway
T20801 621-622 , denotes ,
T20800 610-621 NNP denotes Biosciences
T20799 601-609 NNP denotes Amersham
T20798 600-601 -LRB- denotes (
T20797 588-599 JJ denotes A-Sepharose
T20796 580-587 NN denotes protein
T20795 575-579 IN denotes with
T20794 564-574 VBN denotes precleared
T20793 560-563 VBD denotes was
T20792 553-559 NN denotes sample
T20791 543-552 VBG denotes remaining
T20790 539-542 DT denotes the
T20789 535-538 CC denotes and
T20788 533-534 , denotes ,
T20787 526-533 NN denotes control
T20786 520-525 NN denotes input
T20785 516-519 IN denotes for
T20784 510-515 RB denotes aside
T20783 506-509 VBN denotes set
T20782 502-505 VBD denotes was
T20781 495-501 NN denotes sample
T20780 491-494 DT denotes the
T20779 488-490 IN denotes of
T20778 478-487 NN denotes One-tenth
T20777 476-477 . denotes .
T20776 474-476 NN denotes bp
T20775 470-473 CD denotes 600
T20774 466-469 CC denotes and
T20773 462-465 CD denotes 200
T20772 459-461 TO denotes to
T20771 449-458 VBN denotes sonicated
T20770 444-448 VBD denotes were
T20769 434-443 NNS denotes complexes
T20768 422-433 JJ denotes DNA-protein
T20767 420-421 . denotes .
T20766 417-420 NN denotes min
T20765 414-416 CD denotes 10
T20764 410-413 IN denotes for
T20763 406-409 NN denotes ice
T20762 403-405 IN denotes on
T20761 393-402 VBD denotes incubated
T20760 389-392 CC denotes and
T20759 387-388 , denotes ,
T20758 377-387 NNS denotes inhibitors
T20757 368-376 NN denotes protease
T20756 357-367 VBG denotes containing
T20755 350-356 NN denotes buffer
T20754 344-349 NN denotes lysis
T20753 340-343 NNP denotes SDS
T20752 338-339 DT denotes a
T20751 335-337 IN denotes in
T20750 323-334 VBD denotes resuspended
T20749 321-322 , denotes ,
T20748 320-321 NNP denotes C
T20747 319-320 CD denotes °
T20746 317-318 CD denotes 4
T20745 314-316 IN denotes at
T20744 299-313 NN denotes centrifugation
T20743 296-298 IN denotes by
T20742 286-295 VBN denotes collected
T20741 284-285 , denotes ,
T20740 274-284 NNS denotes inhibitors
T20739 265-273 NN denotes protease
T20738 254-264 VBG denotes containing
T20737 249-253 NNP denotes EDTA
T20736 247-248 NN denotes %
T20735 244-247 CD denotes 0.1
T20734 239-243 IN denotes with
T20733 230-238 NN denotes solution
T20732 225-229 NN denotes salt
T20731 216-224 JJ denotes balanced
T20730 214-215 POS denotes '
T20729 209-214 NNP denotes Hanks
T20728 207-208 CD denotes ×
T20727 206-207 CD denotes 1
T20726 197-205 JJ denotes ice-cold
T20725 194-196 IN denotes in
T20724 187-193 VBD denotes rinsed
T20723 185-186 , denotes ,
T20722 184-185 NNP denotes C
T20721 183-184 CD denotes °
T20720 180-182 CD denotes 37
T20719 177-179 IN denotes at
T20718 173-176 NN denotes min
T20717 170-172 CD denotes 10
T20716 166-169 IN denotes for
T20715 153-165 NN denotes formaldehyde
T20714 151-152 NN denotes %
T20713 150-151 CD denotes 1
T20712 145-149 IN denotes with
T20711 137-144 VBN denotes treated
T20710 132-136 VBD denotes were
T20709 127-131 NNS denotes mice
T20708 124-126 NNP denotes WT
T20707 115-123 JJ denotes 15.5-dpc
T20706 109-114 CD denotes three
T20705 104-108 IN denotes from
T20704 98-103 NNS denotes cells
T20703 92-97 NN denotes liver
T20702 86-91 JJ denotes fetal
T20701 83-85 CC denotes or
T20700 81-82 -RRB- denotes )
T20699 78-81 CD denotes 107
T20698 76-77 CD denotes ×
T20697 74-75 CD denotes 4
T20696 73-74 -LRB- denotes (
T20695 67-72 NNS denotes cells
T20694 63-66 NNP denotes MEL
T20693 58-62 IN denotes from
T20692 52-57 NNS denotes Cells
T20691 50-51 : denotes :
T20690 45-50 NN denotes brief
R14776 T20678 T20679 compound ChIP,assay
R14777 T20679 T20679 ROOT assay,assay
R14778 T20680 T20679 punct .,assay
R14779 T20681 T20682 mark As,described
R14780 T20682 T20711 advcl described,treated
R14781 T20683 T20682 agent by,described
R14782 T20684 T20685 compound Nouzova,[
R14783 T20685 T20687 nmod [,]
R14784 T20686 T20687 nummod 53,]
R14785 T20687 T20683 pobj ],by
R14786 T20688 T20682 punct ",",described
R14787 T20689 T20682 prep in,described
R14788 T20690 T20689 pobj brief,in
R14789 T20691 T20711 punct :,treated
R14790 T20692 T20711 nsubjpass Cells,treated
R14791 T20693 T20692 prep from,Cells
R14792 T20694 T20695 compound MEL,cells
R14793 T20695 T20693 pobj cells,from
R14794 T20696 T20695 punct (,cells
R14795 T20697 T20699 nummod 4,107
R14796 T20698 T20699 nummod ×,107
R14797 T20699 T20695 appos 107,cells
R14798 T20700 T20699 punct ),107
R14799 T20701 T20699 cc or,107
R14800 T20702 T20704 amod fetal,cells
R14801 T20703 T20704 compound liver,cells
R14802 T20704 T20711 nsubjpass cells,treated
R14803 T20705 T20704 prep from,cells
R14804 T20706 T20709 nummod three,mice
R14805 T20707 T20709 amod 15.5-dpc,mice
R14806 T20708 T20709 compound WT,mice
R14807 T20709 T20705 pobj mice,from
R14808 T20710 T20711 auxpass were,treated
R14809 T20711 T20711 ROOT treated,treated
R14810 T20712 T20711 prep with,treated
R14811 T20713 T20714 nummod 1,%
R14812 T20714 T20715 compound %,formaldehyde
R14813 T20715 T20712 pobj formaldehyde,with
R14814 T20716 T20711 prep for,treated
R14815 T20717 T20718 nummod 10,min
R14816 T20718 T20716 pobj min,for
R14817 T20719 T20711 prep at,treated
R14818 T20720 T20721 nummod 37,°
R14819 T20721 T20722 nummod °,C
R14820 T20722 T20719 pobj C,at
R14821 T20723 T20711 punct ",",treated
R14822 T20724 T20711 conj rinsed,treated
R14823 T20725 T20724 prep in,rinsed
R14824 T20726 T20729 amod ice-cold,Hanks
R14825 T20727 T20728 nummod 1,×
R14826 T20728 T20729 compound ×,Hanks
R14827 T20729 T20733 poss Hanks,solution
R14828 T20730 T20729 case ',Hanks
R14829 T20731 T20733 amod balanced,solution
R14830 T20732 T20733 compound salt,solution
R14831 T20733 T20725 pobj solution,in
R14832 T20734 T20733 prep with,solution
R14833 T20735 T20736 nummod 0.1,%
R14834 T20736 T20737 compound %,EDTA
R14835 T20737 T20738 nsubj EDTA,containing
R14836 T20738 T20734 pcomp containing,with
R14837 T20739 T20740 compound protease,inhibitors
R14838 T20740 T20738 dobj inhibitors,containing
R14839 T20741 T20740 punct ",",inhibitors
R14840 T20742 T20740 acl collected,inhibitors
R14841 T20743 T20742 agent by,collected
R14842 T20744 T20743 pobj centrifugation,by
R14843 T20745 T20742 prep at,collected
R14844 T20746 T20747 nummod 4,°
R14845 T20747 T20748 nummod °,C
R14846 T20748 T20745 pobj C,at
R14847 T20749 T20748 punct ",",C
R14848 T20750 T20724 conj resuspended,rinsed
R14849 T20751 T20750 prep in,resuspended
R14850 T20752 T20755 det a,buffer
R14851 T20753 T20755 compound SDS,buffer
R14852 T20754 T20755 compound lysis,buffer
R14853 T20755 T20751 pobj buffer,in
R14854 T20756 T20755 acl containing,buffer
R14855 T20757 T20758 compound protease,inhibitors
R14856 T20758 T20756 dobj inhibitors,containing
R14857 T20759 T20750 punct ",",resuspended
R14858 T20760 T20750 cc and,resuspended
R14859 T20761 T20750 conj incubated,resuspended
R14860 T20762 T20761 prep on,incubated
R14861 T20763 T20762 pobj ice,on
R14862 T20764 T20761 prep for,incubated
R14863 T20765 T20766 nummod 10,min
R14864 T20766 T20764 pobj min,for
R14865 T20767 T20711 punct .,treated
R14866 T20768 T20769 amod DNA-protein,complexes
R14867 T20769 T20771 nsubjpass complexes,sonicated
R14868 T20770 T20771 auxpass were,sonicated
R14869 T20771 T20771 ROOT sonicated,sonicated
R14870 T20772 T20771 prep to,sonicated
R14871 T20773 T20776 nummod 200,bp
R14872 T20774 T20773 cc and,200
R14873 T20775 T20773 conj 600,200
R14874 T20776 T20772 pobj bp,to
R14875 T20777 T20771 punct .,sonicated
R14876 T20778 T20783 nsubjpass One-tenth,set
R14877 T20779 T20778 prep of,One-tenth
R14878 T20780 T20781 det the,sample
R14879 T20781 T20779 pobj sample,of
R14880 T20782 T20783 auxpass was,set
R14881 T20783 T20783 ROOT set,set
R14882 T20784 T20783 advmod aside,set
R14883 T20785 T20783 prep for,set
R14884 T20786 T20787 compound input,control
R14885 T20787 T20785 pobj control,for
R14886 T20788 T20783 punct ",",set
R14887 T20789 T20783 cc and,set
R14888 T20790 T20792 det the,sample
R14889 T20791 T20792 amod remaining,sample
R14890 T20792 T20794 nsubjpass sample,precleared
R14891 T20793 T20794 auxpass was,precleared
R14892 T20794 T20783 conj precleared,set
R14893 T20795 T20794 prep with,precleared
R14894 T20796 T20797 compound protein,A-Sepharose
R14895 T20797 T20795 pobj A-Sepharose,with
R14896 T20798 T20800 punct (,Biosciences
R14897 T20799 T20800 compound Amersham,Biosciences
R14898 T20800 T20797 appos Biosciences,A-Sepharose
R14899 T20801 T20800 punct ",",Biosciences
R14900 T20802 T20800 npadvmod Piscataway,Biosciences
R14901 T20803 T20802 punct ",",Piscataway
R14902 T20804 T20805 compound New,Jersey
R14903 T20805 T20802 conj Jersey,Piscataway
R14904 T20806 T20805 punct ",",Jersey
R14905 T20807 T20808 compound United,States
R14906 T20808 T20802 appos States,Piscataway
R14907 T20809 T20802 punct ),Piscataway
R14908 T20810 T20794 punct .,precleared
R14909 T20811 T20817 prep Following,split
R14910 T20812 T20811 pobj preclearing,Following
R14911 T20813 T20817 punct ",",split
R14912 T20814 T20815 det the,samples
R14913 T20815 T20817 nsubjpass samples,split
R14914 T20816 T20817 auxpass were,split
R14915 T20817 T20817 ROOT split,split
R14916 T20818 T20817 prep into,split
R14917 T20819 T20818 pobj thirds,into
R14918 T20820 T20817 punct :,split
R14919 T20821 T20822 nummod one,sample
R14920 T20822 T20829 nsubjpass sample,treated
R14921 T20823 T20822 acl treated,sample
R14922 T20824 T20823 prep with,treated
R14923 T20825 T20824 pobj anti-Sox6,with
R14924 T20826 T20825 punct ",",anti-Sox6
R14925 T20827 T20828 det a,second
R14926 T20828 T20829 amod second,treated
R14927 T20829 T20817 conj treated,split
R14928 T20830 T20829 prep with,treated
R14929 T20831 T20832 amod normal,rabbit
R14930 T20832 T20833 compound rabbit,IgG
R14931 T20833 T20830 pobj IgG,with
R14932 T20834 T20829 punct ",",treated
R14933 T20835 T20829 cc and,treated
R14934 T20836 T20838 det the,sample
R14935 T20837 T20838 amod third,sample
R14936 T20838 T20829 conj sample,treated
R14937 T20839 T20838 prep without,sample
R14938 T20840 T20839 pobj Ab,without
R14939 T20841 T20829 punct .,treated
R14940 T20842 T20844 det The,two
R14941 T20843 T20844 amod last,two
R14942 T20844 T20846 nsubjpass two,used
R14943 T20845 T20846 auxpass were,used
R14944 T20846 T20846 ROOT used,used
R14945 T20847 T20846 prep as,used
R14946 T20848 T20849 amod negative,controls
R14947 T20849 T20847 pobj controls,as
R14948 T20850 T20846 punct .,used
R14949 T20851 T20853 det The,complexes
R14950 T20852 T20853 amod chromatin-antibody,complexes
R14951 T20853 T20855 nsubjpass complexes,eluted
R14952 T20854 T20855 auxpass were,eluted
R14953 T20855 T20855 ROOT eluted,eluted
R14954 T20856 T20855 punct ",",eluted
R14955 T20857 T20855 cc and,eluted
R14956 T20858 T20860 det the,protein
R14957 T20859 T20860 compound DNA,protein
R14958 T20860 T20861 compound protein,cross-links
R14959 T20861 T20863 nsubjpass cross-links,reversed
R14960 T20862 T20863 auxpass were,reversed
R14961 T20863 T20855 conj reversed,eluted
R14962 T20864 T20863 prep with,reversed
R14963 T20865 T20867 nummod 5,NaCl
R14964 T20866 T20867 compound M,NaCl
R14965 T20867 T20864 pobj NaCl,with
R14966 T20868 T20863 prep at,reversed
R14967 T20869 T20871 nummod 65,C
R14968 T20870 T20871 nummod °,C
R14969 T20871 T20868 pobj C,at
R14970 T20872 T20863 prep for,reversed
R14971 T20873 T20874 nummod 4,h.
R14972 T20874 T20876 compound h.,DNA
R14973 T20875 T20876 compound Input,DNA
R14974 T20876 T20872 pobj DNA,for
R14975 T20877 T20876 cc or,DNA
R14976 T20878 T20879 amod immunoprecipitated,DNA
R14977 T20879 T20876 conj DNA,DNA
R14978 T20880 T20881 auxpass was,used
R14979 T20881 T20863 conj used,reversed
R14980 T20882 T20881 prep as,used
R14981 T20883 T20884 det a,template
R14982 T20884 T20882 pobj template,as
R14983 T20885 T20884 prep in,template
R14984 T20886 T20888 det the,reaction
R14985 T20887 T20888 compound PCR,reaction
R14986 T20888 T20885 pobj reaction,in
R14987 T20889 T20863 punct .,reversed
R14988 T20890 T20891 compound PCR,amplification
R14989 T20891 T20897 nsubjpass amplification,performed
R14990 T20892 T20891 prep of,amplification
R14991 T20893 T20895 det the,promoter
R14992 T20894 T20895 amod ɛy,promoter
R14993 T20895 T20892 pobj promoter,of
R14994 T20896 T20897 auxpass was,performed
R14995 T20897 T20897 ROOT performed,performed
R14996 T20898 T20897 cc and,performed
R14997 T20899 T20897 conj yielded,performed
R14998 T20900 T20902 det a,amplicon
R14999 T20901 T20902 amod 172-bp,amplicon
R15000 T20902 T20899 dobj amplicon,yielded
R15001 T20903 T20902 punct ",",amplicon
R15002 T20904 T20902 amod corresponding,amplicon
R15003 T20905 T20907 aux to,−
R15004 T20906 T20905 pobj nucleotides,to
R15005 T20907 T20904 xcomp −,corresponding
R15006 T20908 T20910 quantmod 31,+140
R15007 T20909 T20910 quantmod to,+140
R15008 T20910 T20907 dobj +140,−
R15009 T20911 T20910 prep of,+140
R15010 T20912 T20914 det the,promoter
R15011 T20913 T20914 amod ɛy,promoter
R15012 T20914 T20911 pobj promoter,of
R15013 T20915 T20916 punct (,primers
R15014 T20916 T20914 appos primers,promoter
R15015 T20917 T20922 nmod MHB1688,′
R15016 T20918 T20917 punct ",",MHB1688
R15017 T20919 T20920 nummod 5,′
R15018 T20920 T20922 nmod ′,′
R15019 T20921 T20922 nummod CGAAGAATAAAAGGCCACCA3,′
R15020 T20922 T20916 dobj ′,primers
R15021 T20923 T20916 punct ;,primers
R15022 T20924 T20916 cc and,primers
R15023 T20925 T20916 conj MHB1689,primers
R15024 T20926 T20925 punct ",",MHB1689
R15025 T20927 T20928 nummod 5,′
R15026 T20928 T20930 compound ′,′
R15027 T20929 T20930 compound GCTTCACCACCAACCTCTTC3,′
R15028 T20930 T20925 conj ′,MHB1689
R15029 T20931 T20930 punct ),′
R15030 T20932 T20897 punct .,performed
R15031 T20933 T20935 nsubjpass PCR,performed
R15032 T20934 T20935 auxpass was,performed
R15033 T20935 T20935 ROOT performed,performed
R15034 T20936 T20935 prep under,performed
R15035 T20937 T20939 det the,conditions
R15036 T20938 T20939 amod following,conditions
R15037 T20939 T20936 pobj conditions,under
R15038 T20940 T20939 punct :,conditions
R15039 T20941 T20942 nummod 95,°
R15040 T20942 T20943 compound °,C
R15041 T20943 T20939 appos C,conditions
R15042 T20944 T20943 prep for,C
R15043 T20945 T20946 nummod 15,min
R15044 T20946 T20944 pobj min,for
R15045 T20947 T20939 acl followed,conditions
R15046 T20948 T20947 agent by,followed
R15047 T20949 T20950 nummod 30,cycles
R15048 T20950 T20948 pobj cycles,by
R15049 T20951 T20950 prep at,cycles
R15050 T20952 T20951 pobj 95,at
R15051 T20953 T20954 nummod °,C
R15052 T20954 T20950 conj C,cycles
R15053 T20955 T20947 prep for,followed
R15054 T20956 T20955 pobj 30,for
R15055 T20957 T20939 appos s,conditions
R15056 T20958 T20935 punct ",",performed
R15057 T20959 T20960 nummod 60,°
R15058 T20960 T20961 compound °,C
R15059 T20961 T20935 npadvmod C,performed
R15060 T20962 T20935 prep for,performed
R15061 T20963 T20962 pobj 30,for
R15062 T20964 T20935 dep s,performed
R15063 T20965 T20935 punct ",",performed
R15064 T20966 T20935 cc and,performed
R15065 T20967 T20969 nummod 72,C
R15066 T20968 T20969 compound °,C
R15067 T20969 T20935 conj C,performed
R15068 T20970 T20969 prep for,C
R15069 T20971 T20970 pobj 45,for
R15070 T20972 T20969 appos s,C
R15071 T20973 T20969 punct ",",C
R15072 T20974 T20935 advcl ending,performed
R15073 T20975 T20974 prep with,ending
R15074 T20976 T20978 det a,extension
R15075 T20977 T20978 amod final,extension
R15076 T20978 T20975 pobj extension,with
R15077 T20979 T20978 prep at,extension
R15078 T20980 T20981 nummod 72,°
R15079 T20981 T20979 pobj °,at
R15080 T20982 T20978 npadvmod C,extension
R15081 T20983 T20978 prep for,extension
R15082 T20984 T20985 nummod 5,min
R15083 T20985 T20983 pobj min,for
R15084 T20986 T20935 punct .,performed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20377 880-898 Protein denotes chromatin-antibody
T20376 793-796 Protein denotes IgG
T20375 751-755 Protein denotes Sox6

testone

Id Subject Object Predicate Lexical cue
T20330 1210-1212 Protein denotes ɛy
T20329 1105-1107 Protein denotes ɛy
T20328 751-755 Protein denotes Sox6
T20327 580-589 Protein denotes protein A

test3

Id Subject Object Predicate Lexical cue
T20338 1210-1212 Protein denotes ɛy
T20337 1105-1107 Protein denotes ɛy
T20336 751-755 Protein denotes Sox6
T20335 580-589 Protein denotes protein A
T20334 1210-1212 Protein denotes ɛy
T20333 1105-1107 Protein denotes ɛy
T20332 751-755 Protein denotes Sox6
T20331 580-589 Protein denotes protein A