PMC:1253828 / 9402-9665 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1253828","sourcedb":"PMC","sourceid":"1253828","source_url":"http://www.ncbi.nlm.nih.gov/pmc/1253828","text":"\nTo screen for the presence of the MRE core consensus sequence TGCRCNC in the promoter region, the upstream sequences of the respective genes were obtained from the University of California Santa Cruz (UCSC) Genome Browser Database (; October/November 2004) (28).","tracks":[{"project":"craft-sa-dev","denotations":[{"id":"T2862","span":{"begin":0,"end":263},"obj":"sentence"},{"id":"T2863","span":{"begin":1,"end":3},"obj":"TO"},{"id":"T2864","span":{"begin":4,"end":10},"obj":"VB"},{"id":"T2865","span":{"begin":147,"end":155},"obj":"VBN"},{"id":"T2866","span":{"begin":11,"end":14},"obj":"IN"},{"id":"T2867","span":{"begin":15,"end":18},"obj":"DT"},{"id":"T2868","span":{"begin":19,"end":27},"obj":"NN"},{"id":"T2869","span":{"begin":28,"end":30},"obj":"IN"},{"id":"T2870","span":{"begin":31,"end":34},"obj":"DT"},{"id":"T2871","span":{"begin":54,"end":62},"obj":"NN"},{"id":"T2872","span":{"begin":35,"end":38},"obj":"NN"},{"id":"T2873","span":{"begin":39,"end":43},"obj":"NN"},{"id":"T2874","span":{"begin":44,"end":53},"obj":"NN"},{"id":"T2875","span":{"begin":63,"end":70},"obj":"NN"},{"id":"T2876","span":{"begin":71,"end":73},"obj":"IN"},{"id":"T2877","span":{"begin":74,"end":77},"obj":"DT"},{"id":"T2878","span":{"begin":87,"end":93},"obj":"NN"},{"id":"T2879","span":{"begin":78,"end":86},"obj":"NN"},{"id":"T2880","span":{"begin":93,"end":95},"obj":","},{"id":"T2881","span":{"begin":95,"end":98},"obj":"DT"},{"id":"T2882","span":{"begin":108,"end":117},"obj":"NNS"},{"id":"T2883","span":{"begin":99,"end":107},"obj":"JJ"},{"id":"T2884","span":{"begin":118,"end":120},"obj":"IN"},{"id":"T2885","span":{"begin":121,"end":124},"obj":"DT"},{"id":"T2886","span":{"begin":136,"end":141},"obj":"NNS"},{"id":"T2887","span":{"begin":125,"end":135},"obj":"JJ"},{"id":"T2888","span":{"begin":142,"end":146},"obj":"VBD"},{"id":"T2889","span":{"begin":156,"end":160},"obj":"IN"},{"id":"T2890","span":{"begin":161,"end":164},"obj":"DT"},{"id":"T2891","span":{"begin":223,"end":231},"obj":"NNP"},{"id":"T2892","span":{"begin":165,"end":175},"obj":"NNP"},{"id":"T2893","span":{"begin":176,"end":178},"obj":"IN"},{"id":"T2894","span":{"begin":179,"end":189},"obj":"NNP"},{"id":"T2895","span":{"begin":196,"end":200},"obj":"NNP"},{"id":"T2896","span":{"begin":190,"end":195},"obj":"NNP"},{"id":"T2897","span":{"begin":201,"end":202},"obj":"-LRB-"},{"id":"T2898","span":{"begin":202,"end":206},"obj":"NNP"},{"id":"T2899","span":{"begin":206,"end":207},"obj":"-RRB-"},{"id":"T2900","span":{"begin":208,"end":214},"obj":"NNP"},{"id":"T2901","span":{"begin":215,"end":222},"obj":"NNP"},{"id":"T2902","span":{"begin":232,"end":233},"obj":"-LRB-"},{"id":"T2903","span":{"begin":243,"end":251},"obj":"NNP"},{"id":"T2904","span":{"begin":233,"end":234},"obj":":"},{"id":"T2905","span":{"begin":235,"end":242},"obj":"NNP"},{"id":"T2906","span":{"begin":242,"end":243},"obj":"SYM"},{"id":"T2907","span":{"begin":252,"end":256},"obj":"CD"},{"id":"T2908","span":{"begin":256,"end":257},"obj":"-RRB-"},{"id":"T2909","span":{"begin":258,"end":259},"obj":"-LRB-"},{"id":"T2910","span":{"begin":259,"end":261},"obj":"CD"},{"id":"T2911","span":{"begin":261,"end":262},"obj":"-RRB-"},{"id":"T2912","span":{"begin":262,"end":263},"obj":"."}],"relations":[{"id":"R1793","pred":"aux","subj":"T2863","obj":"T2864"},{"id":"R1794","pred":"advcl","subj":"T2864","obj":"T2865"},{"id":"R1795","pred":"prep","subj":"T2866","obj":"T2864"},{"id":"R1796","pred":"det","subj":"T2867","obj":"T2868"},{"id":"R1797","pred":"pobj","subj":"T2868","obj":"T2866"},{"id":"R1798","pred":"prep","subj":"T2869","obj":"T2868"},{"id":"R1799","pred":"det","subj":"T2870","obj":"T2871"},{"id":"R1800","pred":"pobj","subj":"T2871","obj":"T2869"},{"id":"R1801","pred":"compound","subj":"T2872","obj":"T2871"},{"id":"R1802","pred":"compound","subj":"T2873","obj":"T2871"},{"id":"R1803","pred":"compound","subj":"T2874","obj":"T2871"},{"id":"R1804","pred":"appos","subj":"T2875","obj":"T2871"},{"id":"R1805","pred":"prep","subj":"T2876","obj":"T2868"},{"id":"R1806","pred":"det","subj":"T2877","obj":"T2878"},{"id":"R1807","pred":"pobj","subj":"T2878","obj":"T2876"},{"id":"R1808","pred":"compound","subj":"T2879","obj":"T2878"},{"id":"R1809","pred":"punct","subj":"T2880","obj":"T2865"},{"id":"R1810","pred":"det","subj":"T2881","obj":"T2882"},{"id":"R1811","pred":"nsubjpass","subj":"T2882","obj":"T2865"},{"id":"R1812","pred":"amod","subj":"T2883","obj":"T2882"},{"id":"R1813","pred":"prep","subj":"T2884","obj":"T2882"},{"id":"R1814","pred":"det","subj":"T2885","obj":"T2886"},{"id":"R1815","pred":"pobj","subj":"T2886","obj":"T2884"},{"id":"R1816","pred":"amod","subj":"T2887","obj":"T2886"},{"id":"R1817","pred":"auxpass","subj":"T2888","obj":"T2865"},{"id":"R1818","pred":"prep","subj":"T2889","obj":"T2865"},{"id":"R1819","pred":"det","subj":"T2890","obj":"T2891"},{"id":"R1820","pred":"pobj","subj":"T2891","obj":"T2889"},{"id":"R1821","pred":"nmod","subj":"T2892","obj":"T2891"},{"id":"R1822","pred":"prep","subj":"T2893","obj":"T2892"},{"id":"R1823","pred":"compound","subj":"T2894","obj":"T2895"},{"id":"R1824","pred":"pobj","subj":"T2895","obj":"T2893"},{"id":"R1825","pred":"compound","subj":"T2896","obj":"T2895"},{"id":"R1826","pred":"punct","subj":"T2897","obj":"T2892"},{"id":"R1827","pred":"appos","subj":"T2898","obj":"T2892"},{"id":"R1828","pred":"punct","subj":"T2899","obj":"T2891"},{"id":"R1829","pred":"compound","subj":"T2900","obj":"T2891"},{"id":"R1830","pred":"compound","subj":"T2901","obj":"T2891"},{"id":"R1831","pred":"punct","subj":"T2902","obj":"T2903"},{"id":"R1832","pred":"parataxis","subj":"T2903","obj":"T2891"},{"id":"R1833","pred":"punct","subj":"T2904","obj":"T2903"},{"id":"R1834","pred":"nmod","subj":"T2905","obj":"T2903"},{"id":"R1835","pred":"punct","subj":"T2906","obj":"T2903"},{"id":"R1836","pred":"nummod","subj":"T2907","obj":"T2903"},{"id":"R1837","pred":"punct","subj":"T2908","obj":"T2903"},{"id":"R1838","pred":"punct","subj":"T2909","obj":"T2910"},{"id":"R1839","pred":"parataxis","subj":"T2910","obj":"T2891"},{"id":"R1840","pred":"punct","subj":"T2911","obj":"T2910"},{"id":"R1841","pred":"punct","subj":"T2912","obj":"T2865"}],"attributes":[{"subj":"T2862","pred":"source","obj":"craft-sa-dev"},{"subj":"T2863","pred":"source","obj":"craft-sa-dev"},{"subj":"T2864","pred":"source","obj":"craft-sa-dev"},{"subj":"T2865","pred":"source","obj":"craft-sa-dev"},{"subj":"T2866","pred":"source","obj":"craft-sa-dev"},{"subj":"T2867","pred":"source","obj":"craft-sa-dev"},{"subj":"T2868","pred":"source","obj":"craft-sa-dev"},{"subj":"T2869","pred":"source","obj":"craft-sa-dev"},{"subj":"T2870","pred":"source","obj":"craft-sa-dev"},{"subj":"T2871","pred":"source","obj":"craft-sa-dev"},{"subj":"T2872","pred":"source","obj":"craft-sa-dev"},{"subj":"T2873","pred":"source","obj":"craft-sa-dev"},{"subj":"T2874","pred":"source","obj":"craft-sa-dev"},{"subj":"T2875","pred":"source","obj":"craft-sa-dev"},{"subj":"T2876","pred":"source","obj":"craft-sa-dev"},{"subj":"T2877","pred":"source","obj":"craft-sa-dev"},{"subj":"T2878","pred":"source","obj":"craft-sa-dev"},{"subj":"T2879","pred":"source","obj":"craft-sa-dev"},{"subj":"T2880","pred":"source","obj":"craft-sa-dev"},{"subj":"T2881","pred":"source","obj":"craft-sa-dev"},{"subj":"T2882","pred":"source","obj":"craft-sa-dev"},{"subj":"T2883","pred":"source","obj":"craft-sa-dev"},{"subj":"T2884","pred":"source","obj":"craft-sa-dev"},{"subj":"T2885","pred":"source","obj":"craft-sa-dev"},{"subj":"T2886","pred":"source","obj":"craft-sa-dev"},{"subj":"T2887","pred":"source","obj":"craft-sa-dev"},{"subj":"T2888","pred":"source","obj":"craft-sa-dev"},{"subj":"T2889","pred":"source","obj":"craft-sa-dev"},{"subj":"T2890","pred":"source","obj":"craft-sa-dev"},{"subj":"T2891","pred":"source","obj":"craft-sa-dev"},{"subj":"T2892","pred":"source","obj":"craft-sa-dev"},{"subj":"T2893","pred":"source","obj":"craft-sa-dev"},{"subj":"T2894","pred":"source","obj":"craft-sa-dev"},{"subj":"T2895","pred":"source","obj":"craft-sa-dev"},{"subj":"T2896","pred":"source","obj":"craft-sa-dev"},{"subj":"T2897","pred":"source","obj":"craft-sa-dev"},{"subj":"T2898","pred":"source","obj":"craft-sa-dev"},{"subj":"T2899","pred":"source","obj":"craft-sa-dev"},{"subj":"T2900","pred":"source","obj":"craft-sa-dev"},{"subj":"T2901","pred":"source","obj":"craft-sa-dev"},{"subj":"T2902","pred":"source","obj":"craft-sa-dev"},{"subj":"T2903","pred":"source","obj":"craft-sa-dev"},{"subj":"T2904","pred":"source","obj":"craft-sa-dev"},{"subj":"T2905","pred":"source","obj":"craft-sa-dev"},{"subj":"T2906","pred":"source","obj":"craft-sa-dev"},{"subj":"T2907","pred":"source","obj":"craft-sa-dev"},{"subj":"T2908","pred":"source","obj":"craft-sa-dev"},{"subj":"T2909","pred":"source","obj":"craft-sa-dev"},{"subj":"T2910","pred":"source","obj":"craft-sa-dev"},{"subj":"T2911","pred":"source","obj":"craft-sa-dev"},{"subj":"T2912","pred":"source","obj":"craft-sa-dev"}]},{"project":"2_test","denotations":[{"id":"16221973-12519945-77403414","span":{"begin":259,"end":261},"obj":"12519945"}],"attributes":[{"subj":"16221973-12519945-77403414","pred":"source","obj":"2_test"}]},{"project":"craft-ca-core-dev","denotations":[{"id":"T2481","span":{"begin":44,"end":53},"obj":"SO:0000993"},{"id":"T2482","span":{"begin":78,"end":86},"obj":"SO:0000167"},{"id":"T2483","span":{"begin":136,"end":141},"obj":"SO:0000704"},{"id":"T2484","span":{"begin":208,"end":214},"obj":"SO:0001026"}],"attributes":[{"subj":"T2481","pred":"source","obj":"craft-ca-core-dev"},{"subj":"T2482","pred":"source","obj":"craft-ca-core-dev"},{"subj":"T2483","pred":"source","obj":"craft-ca-core-dev"},{"subj":"T2484","pred":"source","obj":"craft-ca-core-dev"}]},{"project":"craft-ca-core-ex-dev","denotations":[{"id":"T2524","span":{"begin":44,"end":53},"obj":"SO:0000993"},{"id":"T2525","span":{"begin":54,"end":62},"obj":"SO_EXT:biological_sequence"},{"id":"T2526","span":{"begin":78,"end":86},"obj":"SO_EXT:0000167"},{"id":"T2527","span":{"begin":99,"end":107},"obj":"SO_EXT:sequence_upstreamness"},{"id":"T2528","span":{"begin":108,"end":117},"obj":"SO_EXT:biological_sequence"},{"id":"T2529","span":{"begin":136,"end":141},"obj":"SO_EXT:0000704"},{"id":"T2530","span":{"begin":208,"end":214},"obj":"SO_EXT:0001026"}],"attributes":[{"subj":"T2524","pred":"source","obj":"craft-ca-core-ex-dev"},{"subj":"T2525","pred":"source","obj":"craft-ca-core-ex-dev"},{"subj":"T2526","pred":"source","obj":"craft-ca-core-ex-dev"},{"subj":"T2527","pred":"source","obj":"craft-ca-core-ex-dev"},{"subj":"T2528","pred":"source","obj":"craft-ca-core-ex-dev"},{"subj":"T2529","pred":"source","obj":"craft-ca-core-ex-dev"},{"subj":"T2530","pred":"source","obj":"craft-ca-core-ex-dev"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"craft-sa-dev","color":"#ec9395","default":true},{"id":"2_test","color":"#93afec"},{"id":"craft-ca-core-dev","color":"#c9ec93"},{"id":"craft-ca-core-ex-dev","color":"#ec93e3"}]}]}}