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PMC:1253828 / 569-1077 JSONTXT

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Id Subject Object Predicate Lexical cue
T337 36-43 VBN denotes treated
T348 9-13 VBD denotes were
T349 14-18 CC denotes both
T350 19-23 JJ denotes mock
T351 23-24 HYPH denotes -
T352 25-27 CC denotes or
T353 28-35 NN denotes cadmium
T354 35-36 HYPH denotes -
T355 44-47 CC denotes and
T356 48-53 NN denotes liver
T357 54-62 JJ denotes specific
T358 53-54 HYPH denotes -
T359 63-76 NN denotes transcription
T360 81-89 VBN denotes analyzed
T361 77-80 VBD denotes was
T362 89-90 . denotes .
T363 90-223 sentence denotes Besides the well-characterized metallothionein genes, several new MTF-1 target genes with MRE motifs in the promoter region emerged.
T364 91-98 IN denotes Besides
T366 99-102 DT denotes the
T367 138-143 NNS denotes genes
T368 103-107 RB denotes well
T369 108-121 VBN denotes characterized
T370 107-108 HYPH denotes -
T371 122-137 NN denotes metallothionein
T372 143-145 , denotes ,
T373 145-152 JJ denotes several
T374 170-175 NNS denotes genes
T375 153-156 JJ denotes new
T376 157-160 NN denotes MTF
T377 160-161 HYPH denotes -
T378 161-162 CD denotes 1
T379 163-169 NN denotes target
T380 176-180 IN denotes with
T381 181-184 NN denotes MRE
T382 185-191 NNS denotes motifs
T383 192-194 IN denotes in
T384 195-198 DT denotes the
T385 208-214 NN denotes region
T386 199-207 NN denotes promoter
T387 222-223 . denotes .
T388 223-438 sentence denotes MTF-1 is required for the basal expression of selenoprotein W, muscle 1 gene (Sepw1) that encodes a glutathione-binding and putative antioxidant protein, supporting a role of MTF-1 in the oxidative stress response.
T389 224-227 NN denotes MTF
T390 233-241 VBN denotes required
T391 227-228 HYPH denotes -
T392 228-229 CD denotes 1
T393 230-232 VBZ denotes is
T394 242-245 IN denotes for
T395 246-249 DT denotes the
T396 256-266 NN denotes expression
T397 250-255 JJ denotes basal
T398 267-269 IN denotes of
T399 270-283 NN denotes selenoprotein
T400 296-300 NN denotes gene
T401 284-285 NN denotes W
T402 285-287 , denotes ,
T403 287-293 NN denotes muscle
T404 294-295 CD denotes 1
T405 301-302 -LRB- denotes (
T406 302-307 NN denotes Sepw1
T407 307-308 -RRB- denotes )
T408 309-313 WDT denotes that
T409 314-321 VBZ denotes encodes
T410 322-323 DT denotes a
T411 369-376 NN denotes protein
T412 324-335 NN denotes glutathione
T413 336-343 VBG denotes binding
T414 335-336 HYPH denotes -
T415 344-347 CC denotes and
T416 348-356 JJ denotes putative
T417 357-368 NN denotes antioxidant
T418 376-378 , denotes ,
T419 378-388 VBG denotes supporting
T420 389-390 DT denotes a
T421 391-395 NN denotes role
T422 396-398 IN denotes of
T423 399-402 NN denotes MTF
T424 402-403 HYPH denotes -
T425 403-404 CD denotes 1
T426 405-407 IN denotes in
T427 408-411 DT denotes the
T428 429-437 NN denotes response
T429 412-421 JJ denotes oxidative
T430 422-428 NN denotes stress
T431 437-438 . denotes .
T433 439-450 RB denotes Furthermore
T434 458-466 VBZ denotes mediates
T435 450-452 , denotes ,
T436 452-455 NN denotes MTF
T437 455-456 HYPH denotes -
T438 456-457 CD denotes 1
T439 467-470 DT denotes the
T440 487-497 NN denotes expression
T441 471-478 NN denotes cadmium
T442 479-486 VBN denotes induced
T443 478-479 HYPH denotes -
T444 498-500 IN denotes of
T445 501-502 NN denotes N
T446 503-506 NN denotes myc
T447 502-503 HYPH denotes -
T365 215-222 VBD denotes emerged
R104 T348 T337 auxpass were,treated
R105 T349 T350 preconj both,mock
R106 T350 T337 amod mock,treated
R107 T351 T350 punct -,mock
R108 T352 T350 cc or,mock
R109 T353 T350 conj cadmium,mock
R110 T354 T337 punct -,treated
R111 T355 T337 cc and,treated
R112 T356 T357 npadvmod liver,specific
R113 T357 T359 amod specific,transcription
R114 T358 T357 punct -,specific
R115 T359 T360 nsubjpass transcription,analyzed
R116 T360 T337 conj analyzed,treated
R117 T361 T360 auxpass was,analyzed
R118 T362 T360 punct .,analyzed
R119 T364 T365 prep Besides,emerged
R120 T366 T367 det the,genes
R121 T367 T364 pobj genes,Besides
R122 T368 T369 advmod well,characterized
R123 T369 T367 amod characterized,genes
R124 T370 T369 punct -,characterized
R125 T371 T367 compound metallothionein,genes
R126 T372 T365 punct ", ",emerged
R127 T373 T374 amod several,genes
R129 T375 T374 amod new,genes
R130 T376 T374 nmod MTF,genes
R131 T377 T376 punct -,MTF
R132 T378 T376 nummod 1,MTF
R133 T379 T374 compound target,genes
R134 T380 T374 prep with,genes
R135 T381 T382 compound MRE,motifs
R136 T382 T380 pobj motifs,with
R137 T383 T382 prep in,motifs
R138 T384 T385 det the,region
R139 T385 T383 pobj region,in
R140 T386 T385 compound promoter,region
R141 T387 T365 punct .,emerged
R142 T389 T390 nsubjpass MTF,required
R143 T391 T389 punct -,MTF
R144 T392 T389 nummod 1,MTF
R145 T393 T390 auxpass is,required
R146 T394 T390 prep for,required
R147 T395 T396 det the,expression
R148 T396 T394 pobj expression,for
R149 T397 T396 amod basal,expression
R150 T398 T396 prep of,expression
R151 T399 T400 nmod selenoprotein,gene
R152 T400 T398 pobj gene,of
R153 T401 T400 nmod W,gene
R154 T402 T400 punct ", ",gene
R155 T403 T400 nmod muscle,gene
R156 T404 T400 nummod 1,gene
R157 T405 T400 punct (,gene
R158 T406 T400 appos Sepw1,gene
R159 T407 T400 punct ),gene
R160 T408 T409 dep that,encodes
R161 T409 T400 relcl encodes,gene
R162 T410 T411 det a,protein
R163 T411 T409 dobj protein,encodes
R164 T412 T413 npadvmod glutathione,binding
R165 T413 T411 amod binding,protein
R166 T414 T413 punct -,binding
R167 T415 T413 cc and,binding
R168 T416 T417 amod putative,antioxidant
R169 T417 T413 conj antioxidant,binding
R170 T418 T409 punct ", ",encodes
R171 T419 T409 advcl supporting,encodes
R172 T420 T421 det a,role
R173 T421 T419 dobj role,supporting
R174 T422 T421 prep of,role
R175 T423 T422 pobj MTF,of
R176 T424 T423 punct -,MTF
R177 T425 T423 nummod 1,MTF
R178 T426 T421 prep in,role
R179 T427 T428 det the,response
R180 T428 T426 pobj response,in
R181 T429 T428 amod oxidative,response
R182 T430 T428 compound stress,response
R183 T431 T390 punct .,required
R184 T433 T434 advmod Furthermore,mediates
R185 T435 T434 punct ", ",mediates
R186 T436 T434 nsubj MTF,mediates
R187 T437 T436 punct -,MTF
R188 T438 T436 nummod 1,MTF
R189 T439 T440 det the,expression
R190 T440 T434 dobj expression,mediates
R191 T441 T442 npadvmod cadmium,induced
R192 T442 T440 amod induced,expression
R193 T443 T442 punct -,induced
R194 T444 T440 prep of,expression
R195 T445 T446 nmod N,myc
R197 T447 T446 punct -,myc
R128 T374 T365 nsubj genes,emerged

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T101 48-53 UBERON:0002107 denotes liver
T102 138-143 SO:0000704 denotes genes
T103 157-162 PR:000010717 denotes MTF-1
T104 170-175 SO:0000704 denotes genes
T105 199-207 SO:0000167 denotes promoter
T106 224-229 PR:000010717 denotes MTF-1
T107 256-266 GO:0010467 denotes expression
T108 270-295 PR:000014662 denotes selenoprotein W, muscle 1
T109 296-300 SO:0000704 denotes gene
T110 302-307 PR:000014662 denotes Sepw1
T111 324-335 CHEBI:16856 denotes glutathione
T112 399-404 PR:000010717 denotes MTF-1
T113 412-421 MOP:0000568 denotes oxidative
T114 452-457 PR:000010717 denotes MTF-1
T115 487-497 GO:0010467 denotes expression

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T172 28-35 CHEBI_EXT:cadmium denotes cadmium
T173 48-53 UBERON:0002107 denotes liver
T174 63-76 GO_EXT:transcription denotes transcription
T175 138-143 SO_EXT:0000704 denotes genes
T176 157-162 PR_EXT:000010717 denotes MTF-1
T177 170-175 SO_EXT:0000704 denotes genes
T178 185-191 SO_EXT:sequence_or_structure_motif denotes motifs
T179 199-207 SO_EXT:0000167 denotes promoter
T180 224-229 PR_EXT:000010717 denotes MTF-1
T181 256-266 GO:0010467 denotes expression
T182 270-283 CHEBI_EXT:selenoprotein denotes selenoprotein
T183 270-295 PR_EXT:000014662 denotes selenoprotein W, muscle 1
T184 287-293 UBERON_EXT:muscle_structure_or_tissue denotes muscle
T185 296-300 SO_EXT:0000704 denotes gene
T186 302-307 PR_EXT:000014662 denotes Sepw1
T187 314-321 SO_EXT:sequence_coding_function denotes encodes
T188 324-335 CHEBI:16856 denotes glutathione
T189 336-343 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T190 357-368 CHEBI_GO_EXT:antioxidant denotes antioxidant
T191 361-368 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T192 369-376 CHEBI_PR_EXT:protein denotes protein
T193 399-404 PR_EXT:000010717 denotes MTF-1
T194 412-421 MOP:0000568 denotes oxidative
T195 429-437 GO_EXT:reaction_or_response denotes response
T196 452-457 PR_EXT:000010717 denotes MTF-1
T197 471-478 CHEBI_EXT:cadmium denotes cadmium
T198 487-497 GO:0010467 denotes expression