> top > docs > PMC:1186732 > spans > 3745-4800 > annotations

PMC:1186732 / 3745-4800 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T834 0-3 DT denotes The
T835 12-19 NNS denotes reports
T836 4-11 JJ denotes initial
T837 42-52 VBD denotes attributed
T838 20-22 IN denotes of
T839 23-31 NNS denotes patients
T840 32-36 IN denotes with
T841 37-41 NN denotes ESCS
T842 53-56 DT denotes the
T843 65-68 NN denotes ERG
T844 57-64 JJ denotes unusual
T845 69-71 IN denotes to
T846 72-74 DT denotes an
T847 116-122 NN denotes system
T848 75-85 RB denotes abnormally
T849 86-97 VBG denotes functioning
T850 98-101 NN denotes rod
T851 102-115 NN denotes photoreceptor
T852 123-127 IN denotes with
T853 128-138 JJ denotes persistent
T854 139-147 NN denotes activity
T855 148-153 IN denotes under
T856 154-159 NN denotes light
T857 160-170 NN denotes adaptation
T858 171-172 -LRB- denotes [
T859 172-173 CD denotes 6
T860 173-174 SYM denotes –
T861 174-175 CD denotes 8
T862 175-176 -RRB- denotes ]
T863 176-177 . denotes .
T864 177-340 sentence denotes Subsequent studies, however, concluded that the ERG was due to supernumerary short-wavelength (“blue”) cone photoreceptors (S-cones) in these patients [1,2,9–11].
T865 178-188 JJ denotes Subsequent
T866 189-196 NNS denotes studies
T867 207-216 VBD denotes concluded
T868 196-198 , denotes ,
T869 198-205 RB denotes however
T870 205-207 , denotes ,
T871 217-221 IN denotes that
T872 230-233 VBD denotes was
T873 222-225 DT denotes the
T874 226-229 NN denotes ERG
T875 234-237 IN denotes due
T876 238-240 IN denotes to
T877 241-254 JJ denotes supernumerary
T878 286-300 NNS denotes photoreceptors
T879 255-260 JJ denotes short
T880 261-271 NN denotes wavelength
T881 260-261 HYPH denotes -
T882 272-273 -LRB- denotes (
T883 274-278 JJ denotes blue
T884 273-274 `` denotes “
T885 278-279 '' denotes ”
T886 279-280 -RRB- denotes )
T887 281-285 NN denotes cone
T888 301-302 -LRB- denotes (
T889 302-303 NN denotes S
T890 304-309 NNS denotes cones
T891 303-304 HYPH denotes -
T892 309-310 -RRB- denotes )
T893 311-313 IN denotes in
T894 314-319 DT denotes these
T895 320-328 NNS denotes patients
T896 329-330 -LRB- denotes [
T897 330-331 CD denotes 1
T898 331-332 , denotes ,
T899 332-333 CD denotes 2
T900 333-334 , denotes ,
T901 334-335 CD denotes 9
T902 335-336 SYM denotes –
T903 336-338 CD denotes 11
T904 338-339 -RRB- denotes ]
T905 339-340 . denotes .
T906 340-559 sentence denotes Histopathologic analysis of a retina from a human patient with ESCS and extensive retinal degeneration demonstrated an absence of rhodopsin-positive cells and an increase in the number of S-cone opsin-expressing cells.
T907 341-356 JJ denotes Histopathologic
T908 357-365 NN denotes analysis
T909 444-456 VBD denotes demonstrated
T910 366-368 IN denotes of
T911 369-370 DT denotes a
T912 371-377 NN denotes retina
T913 378-382 IN denotes from
T914 383-384 DT denotes a
T915 391-398 NN denotes patient
T916 385-390 JJ denotes human
T917 399-403 IN denotes with
T918 404-408 NN denotes ESCS
T919 409-412 CC denotes and
T920 413-422 JJ denotes extensive
T921 431-443 NN denotes degeneration
T922 423-430 JJ denotes retinal
T923 457-459 DT denotes an
T924 460-467 NN denotes absence
T925 468-470 IN denotes of
T926 471-480 NN denotes rhodopsin
T927 481-489 JJ denotes positive
T928 480-481 HYPH denotes -
T929 490-495 NNS denotes cells
T930 496-499 CC denotes and
T931 500-502 DT denotes an
T932 503-511 NN denotes increase
T933 512-514 IN denotes in
T934 515-518 DT denotes the
T935 519-525 NN denotes number
T936 526-528 IN denotes of
T937 529-530 NN denotes S
T938 531-535 NN denotes cone
T939 530-531 HYPH denotes -
T940 553-558 NNS denotes cells
T941 536-541 NN denotes opsin
T942 542-552 VBG denotes expressing
T943 541-542 HYPH denotes -
T944 558-559 . denotes .
T945 559-795 sentence denotes Nevertheless, the overall density of cones was only modestly increased in this patient (approximately 2-fold), suggesting that there might be additional factors that contribute to the very large, light-adapted ERG seen in this disease.
T946 560-572 RB denotes Nevertheless
T947 621-630 VBN denotes increased
T948 572-574 , denotes ,
T949 574-577 DT denotes the
T950 586-593 NN denotes density
T951 578-585 JJ denotes overall
T952 594-596 IN denotes of
T953 597-602 NNS denotes cones
T954 603-606 VBD denotes was
T955 607-611 RB denotes only
T956 612-620 RB denotes modestly
T957 631-633 IN denotes in
T958 634-638 DT denotes this
T959 639-646 NN denotes patient
T960 647-648 -LRB- denotes (
T961 664-668 RB denotes fold
T962 648-661 RB denotes approximately
T963 662-663 CD denotes 2
T964 663-664 HYPH denotes -
T965 668-669 -RRB- denotes )
T966 669-671 , denotes ,
T967 671-681 VBG denotes suggesting
T968 682-686 IN denotes that
T969 699-701 VB denotes be
T970 687-692 EX denotes there
T971 693-698 MD denotes might
T972 702-712 JJ denotes additional
T973 713-720 NNS denotes factors
T974 721-725 WDT denotes that
T975 726-736 VBP denotes contribute
T976 737-739 IN denotes to
T977 740-743 DT denotes the
T978 770-773 NN denotes ERG
T979 744-748 RB denotes very
T980 749-754 JJ denotes large
T981 754-756 , denotes ,
T982 756-761 NN denotes light
T983 762-769 VBN denotes adapted
T984 761-762 HYPH denotes -
T985 774-778 VBN denotes seen
T986 779-781 IN denotes in
T987 782-786 DT denotes this
T988 787-794 NN denotes disease
T989 794-795 . denotes .
T990 795-1055 sentence denotes In addition to the ERG findings, patients with ESCS have dysmorphic retinas with rosette formation in the outer nuclear layer (ONL) where photoreceptor cell bodies reside, and a slow retinal degeneration that can ultimately lead to complete blindness [12–14].
T991 796-798 IN denotes In
T992 848-852 VBP denotes have
T993 799-807 NN denotes addition
T994 808-810 IN denotes to
T995 811-814 DT denotes the
T996 819-827 NNS denotes findings
T997 815-818 NN denotes ERG
T998 827-829 , denotes ,
T999 829-837 NNS denotes patients
T1000 838-842 IN denotes with
T1001 843-847 NN denotes ESCS
T1002 853-863 JJ denotes dysmorphic
T1003 864-871 NNS denotes retinas
T1004 872-876 IN denotes with
T1005 877-884 NN denotes rosette
T1006 885-894 NN denotes formation
T1007 895-897 IN denotes in
T1008 898-901 DT denotes the
T1009 916-921 NN denotes layer
T1010 902-907 JJ denotes outer
T1011 908-915 JJ denotes nuclear
T1012 922-923 -LRB- denotes (
T1013 923-926 NN denotes ONL
T1014 926-927 -RRB- denotes )
T1015 928-933 WRB denotes where
T1016 960-966 VBP denotes reside
T1017 934-947 NN denotes photoreceptor
T1018 953-959 NNS denotes bodies
T1019 948-952 NN denotes cell
T1020 966-968 , denotes ,
T1021 968-971 CC denotes and
T1022 972-973 DT denotes a
T1023 987-999 NN denotes degeneration
T1024 974-978 JJ denotes slow
T1025 979-986 JJ denotes retinal
T1026 1000-1004 WDT denotes that
T1027 1020-1024 VB denotes lead
T1028 1005-1008 MD denotes can
T1029 1009-1019 RB denotes ultimately
T1030 1025-1027 IN denotes to
T1031 1028-1036 JJ denotes complete
T1032 1037-1046 NN denotes blindness
T1033 1047-1048 -LRB- denotes [
T1034 1048-1050 CD denotes 12
T1035 1050-1051 SYM denotes –
T1036 1051-1053 CD denotes 14
T1037 1053-1054 -RRB- denotes ]
T1038 1054-1055 . denotes .
R418 T834 T835 det The,reports
R419 T835 T837 nsubj reports,attributed
R420 T836 T835 amod initial,reports
R421 T838 T835 prep of,reports
R422 T839 T838 pobj patients,of
R423 T840 T839 prep with,patients
R424 T841 T840 pobj ESCS,with
R425 T842 T843 det the,ERG
R426 T843 T837 dobj ERG,attributed
R427 T844 T843 amod unusual,ERG
R428 T845 T837 prep to,attributed
R429 T846 T847 det an,system
R430 T847 T845 pobj system,to
R431 T848 T849 advmod abnormally,functioning
R432 T849 T847 amod functioning,system
R433 T850 T847 compound rod,system
R434 T851 T847 compound photoreceptor,system
R435 T852 T847 prep with,system
R436 T853 T854 amod persistent,activity
R437 T854 T852 pobj activity,with
R438 T855 T854 prep under,activity
R439 T856 T857 compound light,adaptation
R440 T857 T855 pobj adaptation,under
R441 T858 T859 punct [,6
R442 T859 T837 parataxis 6,attributed
R443 T860 T861 punct –,8
R444 T861 T859 prep 8,6
R445 T862 T859 punct ],6
R446 T863 T837 punct .,attributed
R447 T865 T866 amod Subsequent,studies
R448 T866 T867 nsubj studies,concluded
R449 T868 T867 punct ", ",concluded
R450 T869 T867 advmod however,concluded
R451 T870 T867 punct ", ",concluded
R452 T871 T872 mark that,was
R453 T872 T867 ccomp was,concluded
R454 T873 T874 det the,ERG
R455 T874 T872 nsubj ERG,was
R456 T875 T872 prep due,was
R457 T876 T875 pcomp to,due
R458 T877 T878 amod supernumerary,photoreceptors
R459 T878 T875 pobj photoreceptors,due
R460 T879 T880 amod short,wavelength
R461 T880 T878 nmod wavelength,photoreceptors
R462 T881 T880 punct -,wavelength
R463 T882 T883 punct (,blue
R464 T883 T878 parataxis blue,photoreceptors
R465 T884 T883 punct “,blue
R466 T885 T883 punct ”,blue
R467 T886 T883 punct ),blue
R468 T887 T878 compound cone,photoreceptors
R469 T888 T878 punct (,photoreceptors
R470 T889 T890 compound S,cones
R471 T890 T878 appos cones,photoreceptors
R472 T891 T890 punct -,cones
R473 T892 T878 punct ),photoreceptors
R474 T893 T878 prep in,photoreceptors
R475 T894 T895 det these,patients
R476 T895 T893 pobj patients,in
R477 T896 T897 punct [,1
R478 T897 T872 parataxis 1,was
R479 T898 T897 punct ",",1
R480 T899 T897 appos 2,1
R481 T900 T897 punct ",",1
R482 T901 T897 appos 9,1
R483 T902 T903 punct –,11
R484 T903 T901 prep 11,9
R485 T904 T897 punct ],1
R486 T905 T867 punct .,concluded
R487 T907 T908 amod Histopathologic,analysis
R488 T908 T909 nsubj analysis,demonstrated
R489 T910 T908 prep of,analysis
R490 T911 T912 det a,retina
R491 T912 T910 pobj retina,of
R492 T913 T912 prep from,retina
R493 T914 T915 det a,patient
R494 T915 T913 pobj patient,from
R495 T916 T915 amod human,patient
R496 T917 T915 prep with,patient
R497 T918 T917 pobj ESCS,with
R498 T919 T918 cc and,ESCS
R499 T920 T921 amod extensive,degeneration
R500 T921 T918 conj degeneration,ESCS
R501 T922 T921 amod retinal,degeneration
R502 T923 T924 det an,absence
R503 T924 T909 dobj absence,demonstrated
R504 T925 T924 prep of,absence
R505 T926 T927 npadvmod rhodopsin,positive
R506 T927 T929 amod positive,cells
R507 T928 T927 punct -,positive
R508 T929 T925 pobj cells,of
R509 T930 T924 cc and,absence
R510 T931 T932 det an,increase
R511 T932 T924 conj increase,absence
R512 T933 T932 prep in,increase
R513 T934 T935 det the,number
R514 T935 T933 pobj number,in
R515 T936 T935 prep of,number
R516 T937 T938 nmod S,cone
R517 T938 T940 nmod cone,cells
R518 T939 T938 punct -,cone
R519 T940 T936 pobj cells,of
R520 T941 T942 npadvmod opsin,expressing
R521 T942 T940 amod expressing,cells
R522 T943 T942 punct -,expressing
R523 T944 T909 punct .,demonstrated
R524 T946 T947 advmod Nevertheless,increased
R525 T948 T947 punct ", ",increased
R526 T949 T950 det the,density
R527 T950 T947 nsubjpass density,increased
R528 T951 T950 amod overall,density
R529 T952 T950 prep of,density
R530 T953 T952 pobj cones,of
R531 T954 T947 auxpass was,increased
R532 T955 T956 advmod only,modestly
R533 T956 T947 advmod modestly,increased
R534 T957 T947 prep in,increased
R535 T958 T959 det this,patient
R536 T959 T957 pobj patient,in
R537 T960 T961 punct (,fold
R538 T961 T947 parataxis fold,increased
R539 T962 T963 advmod approximately,2
R540 T963 T961 quantmod 2,fold
R541 T964 T961 punct -,fold
R542 T965 T961 punct ),fold
R543 T966 T947 punct ", ",increased
R544 T967 T947 advcl suggesting,increased
R545 T968 T969 mark that,be
R546 T969 T967 ccomp be,suggesting
R547 T970 T969 expl there,be
R548 T971 T969 aux might,be
R549 T972 T973 amod additional,factors
R550 T973 T969 attr factors,be
R551 T974 T975 dep that,contribute
R552 T975 T973 relcl contribute,factors
R553 T976 T975 prep to,contribute
R554 T977 T978 det the,ERG
R555 T978 T976 pobj ERG,to
R556 T979 T980 advmod very,large
R557 T980 T978 amod large,ERG
R558 T981 T978 punct ", ",ERG
R559 T982 T983 npadvmod light,adapted
R560 T983 T978 amod adapted,ERG
R561 T984 T983 punct -,adapted
R562 T985 T978 acl seen,ERG
R563 T986 T985 prep in,seen
R564 T987 T988 det this,disease
R565 T988 T986 pobj disease,in
R566 T989 T947 punct .,increased
R567 T991 T992 prep In,have
R568 T993 T991 pobj addition,In
R569 T994 T993 prep to,addition
R570 T995 T996 det the,findings
R571 T996 T994 pobj findings,to
R572 T997 T996 compound ERG,findings
R573 T998 T992 punct ", ",have
R574 T999 T992 nsubj patients,have
R575 T1000 T999 prep with,patients
R576 T1001 T1000 pobj ESCS,with
R577 T1002 T1003 amod dysmorphic,retinas
R578 T1003 T992 dobj retinas,have
R579 T1004 T1003 prep with,retinas
R580 T1005 T1006 compound rosette,formation
R581 T1006 T1004 pobj formation,with
R582 T1007 T1006 prep in,formation
R583 T1008 T1009 det the,layer
R584 T1009 T1007 pobj layer,in
R585 T1010 T1009 amod outer,layer
R586 T1011 T1009 amod nuclear,layer
R587 T1012 T1009 punct (,layer
R588 T1013 T1009 appos ONL,layer
R589 T1014 T1009 punct ),layer
R590 T1015 T1016 advmod where,reside
R591 T1016 T1009 relcl reside,layer
R592 T1017 T1018 compound photoreceptor,bodies
R593 T1018 T1016 nsubj bodies,reside
R594 T1019 T1018 compound cell,bodies
R595 T1020 T1003 punct ", ",retinas
R596 T1021 T1003 cc and,retinas
R597 T1022 T1023 det a,degeneration
R598 T1023 T1003 conj degeneration,retinas
R599 T1024 T1023 amod slow,degeneration
R600 T1025 T1023 amod retinal,degeneration
R601 T1026 T1027 dep that,lead
R602 T1027 T1023 relcl lead,degeneration
R603 T1028 T1027 aux can,lead
R604 T1029 T1027 advmod ultimately,lead
R605 T1030 T1027 prep to,lead
R606 T1031 T1032 amod complete,blindness
R607 T1032 T1030 pobj blindness,to
R608 T1033 T1034 punct [,12
R609 T1034 T992 parataxis 12,have
R610 T1035 T1036 punct –,14
R611 T1036 T1034 prep 14,12
R612 T1037 T1034 punct ],12
R613 T1038 T992 punct .,have

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T643 98-115 CL:0000604 denotes rod photoreceptor
T644 274-278 _FRAGMENT denotes blue
T645 286-300 CL:0000495 denotes photoreceptors
T646 281-300 CL:0000573 denotes cone photoreceptors
T647 304-309 CL:0000573 denotes cones
T648 371-377 UBERON:0000966 denotes retina
T649 385-390 NCBITaxon:9606 denotes human
T650 423-430 UBERON:0000966 denotes retinal
T651 471-480 PR_EXT:000001245 denotes rhodopsin
T652 490-495 CL_GO_EXT:cell denotes cells
T653 529-541 PR_EXT:000001195 denotes S-cone opsin
T654 531-535 CL:0000573 denotes cone
T655 542-552 GO:0010467 denotes expressing
T656 553-558 CL_GO_EXT:cell denotes cells
T657 597-602 CL:0000573 denotes cones
T658 864-871 UBERON:0000966 denotes retinas
T659 902-921 UBERON:0001789 denotes outer nuclear layer
T660 908-915 GO:0005634 denotes nuclear
T661 923-926 UBERON:0001789 denotes ONL
T662 934-947 CL:0000210 denotes photoreceptor
T663 948-952 CL_GO_EXT:cell denotes cell
T664 948-959 GO:0044297 denotes cell bodies
T665 979-986 UBERON:0000966 denotes retinal
R294 T645 T644 _lexicallyChainedTo photoreceptors,blue

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T574 98-115 CL:0000604 denotes rod photoreceptor
T575 274-278 _FRAGMENT denotes blue
T576 286-300 CL:0000495 denotes photoreceptors
T577 281-300 CL:0000573 denotes cone photoreceptors
T578 304-309 CL:0000573 denotes cones
T579 371-377 UBERON:0000966 denotes retina
T580 385-390 NCBITaxon:9606 denotes human
T581 423-430 UBERON:0000966 denotes retinal
T582 471-480 PR:000001245 denotes rhodopsin
T583 529-541 PR:000001195 denotes S-cone opsin
T584 531-535 CL:0000573 denotes cone
T585 542-552 GO:0010467 denotes expressing
T586 597-602 CL:0000573 denotes cones
T587 864-871 UBERON:0000966 denotes retinas
T588 902-921 UBERON:0001789 denotes outer nuclear layer
T589 908-915 GO:0005634 denotes nuclear
T590 923-926 UBERON:0001789 denotes ONL
T591 934-947 CL:0000210 denotes photoreceptor
T592 948-959 GO:0044297 denotes cell bodies
T593 979-986 UBERON:0000966 denotes retinal
R293 T576 T575 _lexicallyChainedTo photoreceptors,blue

2_test

Id Subject Object Predicate Lexical cue
16110338-2787013-85798503 172-173 2787013 denotes 6
16110338-2789128-85798503 172-173 2789128 denotes 6
16110338-2335450-85798504 330-331 2335450 denotes 1
16110338-7645276-85798505 332-333 7645276 denotes 2
16110338-2012146-85798506 334-335 2012146 denotes 9
16110338-2378376-85798506 334-335 2378376 denotes 9
16110338-1743268-85798506 334-335 1743268 denotes 9
16110338-15229190-85798507 1048-1050 15229190 denotes 12
16110338-11773633-85798507 1048-1050 11773633 denotes 12
16110338-301373-85798507 1048-1050 301373 denotes 12
T14338 172-173 2787013 denotes 6
T26432 172-173 2789128 denotes 6
T77085 330-331 2335450 denotes 1
T40817 332-333 7645276 denotes 2
T88637 334-335 2012146 denotes 9
T68689 334-335 2378376 denotes 9
T15477 334-335 1743268 denotes 9
T72997 1048-1050 15229190 denotes 12
T6341 1048-1050 11773633 denotes 12
T19811 1048-1050 301373 denotes 12