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PMC:1183529 / 816-1178 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T920 16-25 UBERON:0002048 denotes pulmonary
T921 69-73 PR:000017653 denotes FOG2
T922 136-156 SO:0001587 denotes premature stop codon
T923 172-176 GO:0016265 denotes died
T924 197-201 UBERON:0000104 denotes life
T925 232-241 UBERON:0002048 denotes pulmonary
T926 284-293 UBERON:0001103 denotes diaphragm
T927 355-359 PR:000017653 denotes Fog2

Biotea

Id Subject Object Predicate Lexical cue
T485 284-293 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C23633 denotes diaphragm
T488 284-293 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C49920 denotes diaphragm
T491 284-293 http://purl.bioontology.org/ontology/MESH/D003964 denotes diaphragm
T494 284-293 http://purl.bioontology.org/ontology/OMIM/MTHU001435 denotes diaphragm
T497 284-293 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12702 denotes diaphragm
T500 284-293 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C42767 denotes diaphragm
T503 284-293 http://purl.bioontology.org/ontology/MEDDRA/10012704 denotes diaphragm
T506 284-293 http://purl.bioontology.org/ontology/NDDF/YD denotes diaphragm
T509 284-293 http://purl.org/sig/ont/fma/fma13295 denotes diaphragm
T512 284-293 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C47890 denotes diaphragm
T515 284-293 http://purl.bioontology.org/ontology/SNOMEDCT/5798000 denotes diaphragm
T657 84-92 http://purl.bioontology.org/ontology/MESH/Q000032 denotes analysis
T659 84-92 http://purl.bioontology.org/ontology/SNOMEDCT/272389005 denotes analysis
T661 84-92 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25391 denotes analysis
T682 112-120 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16885 denotes mutation
T686 56-65 http://purl.bioontology.org/ontology/MESH/D009154 denotes mutations
T687 112-120 http://purl.bioontology.org/ontology/MESH/D009154 denotes mutation
T691 112-120 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C45576 denotes mutation
T693 16-36 http://purl.bioontology.org/ontology/OMIM/MTHU004127 denotes pulmonary hypoplasia
T694 232-252 http://purl.bioontology.org/ontology/OMIM/MTHU004127 denotes pulmonary hypoplasia
T696 16-36 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C99035 denotes pulmonary hypoplasia
T697 232-252 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C99035 denotes pulmonary hypoplasia
T699 16-36 http://purl.bioontology.org/ontology/MEDDRA/10037407 denotes pulmonary hypoplasia
T700 232-252 http://purl.bioontology.org/ontology/MEDDRA/10037407 denotes pulmonary hypoplasia
T702 16-25 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C13304 denotes pulmonary
T703 232-241 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C13304 denotes pulmonary
T707 16-25 http://purl.bioontology.org/ontology/SNOMEDCT/738985004 denotes pulmonary
T708 232-241 http://purl.bioontology.org/ontology/SNOMEDCT/738985004 denotes pulmonary
T712 16-25 http://purl.bioontology.org/ontology/SNOMEDCT/264164005 denotes pulmonary
T713 232-241 http://purl.bioontology.org/ontology/SNOMEDCT/264164005 denotes pulmonary
T717 26-36 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C120893 denotes hypoplasia
T718 242-252 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C120893 denotes hypoplasia
T720 26-36 http://purl.bioontology.org/ontology/SNOMEDCT/55199003 denotes hypoplasia
T721 242-252 http://purl.bioontology.org/ontology/SNOMEDCT/55199003 denotes hypoplasia
T731 69-73 http://purl.obolibrary.org/obo/PR_000017653 denotes FOG2
T732 355-359 http://purl.obolibrary.org/obo/PR_000017653 denotes Fog2
T736 69-73 http://purl.obolibrary.org/obo/PR_Q8CCH7 denotes FOG2
T737 355-359 http://purl.obolibrary.org/obo/PR_Q8CCH7 denotes Fog2
T741 69-73 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C102765 denotes FOG2
T742 355-359 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C102765 denotes Fog2
T766 75-92 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17565 denotes Sequence analysis
T821 5-11 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C43429 denotes defect
T822 5-11 http://purl.bioontology.org/ontology/SNOMEDCT/6920004 denotes defect
T823 42-51 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25214 denotes evaluated
T824 75-92 http://purl.bioontology.org/ontology/MESH/D017421 denotes Sequence analysis
T825 75-83 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C43465 denotes Sequence
T826 75-83 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C89252 denotes Sequence
T827 75-83 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C13299 denotes Sequence
T828 75-83 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25673 denotes Sequence
T829 75-83 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C45374 denotes Sequence
T830 75-83 http://purl.obolibrary.org/obo/SO_0000001 denotes Sequence
T831 93-101 http://purl.bioontology.org/ontology/SNOMEDCT/263857004 denotes revealed
T832 104-120 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C93106 denotes de novo mutation
T833 104-120 http://purl.bioontology.org/ontology/OMIM/MTHU036578 denotes de novo mutation
T834 104-111 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C28354 denotes de novo
T835 121-133 http://purl.bioontology.org/ontology/SNOMEDCT/79409006 denotes resulting in
T836 136-145 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C133441 denotes premature
T838 151-156 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C62019 denotes codon
T839 151-156 http://purl.bioontology.org/ontology/NDFRT/N0000170695 denotes codon
T840 151-156 http://purl.bioontology.org/ontology/MESH/D003062 denotes codon
T841 162-167 http://purl.bioontology.org/ontology/SNOMEDCT/410601007 denotes child
T842 162-167 http://purl.bioontology.org/ontology/SNOMEDCT/67822003 denotes child
T843 162-167 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C150886 denotes child
T844 162-167 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16423 denotes child
T845 162-167 http://purl.bioontology.org/ontology/MESH/D002648 denotes child
T846 162-167 http://purl.bioontology.org/ontology/NDFRT/N0000010205 denotes child
T847 172-176 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C28554 denotes died
T848 172-176 http://purl.bioontology.org/ontology/SNOMEDCT/419099009 denotes died
T849 190-193 http://purl.bioontology.org/ontology/SNOMEDCT/258703001 denotes day
T850 190-193 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25301 denotes day
T851 197-201 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C142142 denotes life
T852 197-201 http://purl.bioontology.org/ontology/MESH/D019369 denotes life
T853 197-201 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C20203 denotes life
T854 202-214 http://purl.bioontology.org/ontology/SNOMEDCT/2603003 denotes secondary to
T855 202-211 http://purl.bioontology.org/ontology/SNOMEDCT/2603003 denotes secondary
T856 202-211 http://purl.bioontology.org/ontology/MESH/Q000556 denotes secondary
T857 202-211 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25667 denotes secondary
T858 202-211 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25666 denotes secondary
T859 215-221 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C121395 denotes severe
T860 215-221 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C122951 denotes severe
T861 215-221 http://purl.bioontology.org/ontology/SNOMEDCT/24484000 denotes severe
T862 215-221 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C41340 denotes severe
T863 215-221 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C156244 denotes severe
T864 215-221 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C70667 denotes severe
T865 222-231 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C13332 denotes bilateral
T866 222-231 http://purl.bioontology.org/ontology/SNOMEDCT/51440002 denotes bilateral
T867 303-312 http://purl.obolibrary.org/obo/OGMS_0000023 denotes phenotype
T868 303-312 http://purl.bioontology.org/ontology/SNOMEDCT/8116006 denotes phenotype
T869 303-312 http://purl.bioontology.org/ontology/MESH/D010641 denotes phenotype
T870 303-312 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16977 denotes phenotype
T871 313-319 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C141290 denotes driven
T872 338-349 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C62559 denotes established
T873 338-349 http://purl.bioontology.org/ontology/SNOMEDCT/263748003 denotes established
T874 338-349 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C71155 denotes established
T837 146-156 http://purl.bioontology.org/ontology/NDFRT/N0000170697 denotes stop codon

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T974 16-25 UBERON:0002048 denotes pulmonary
T975 56-65 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T976 69-73 PR_EXT:000017653 denotes FOG2
T977 75-83 SO_EXT:biological_sequence denotes Sequence
T978 112-120 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T979 136-156 SO_EXT:0001587 denotes premature stop codon
T980 162-167 NCBITaxon_UBERON_EXT:child denotes child
T981 172-176 GO:0016265 denotes died
T982 197-201 UBERON:0000104 denotes life
T983 232-241 UBERON:0002048 denotes pulmonary
T984 271-283 GO_EXT:muscle_structure_or_tissue_development denotes muscularized
T985 284-293 UBERON:0001103 denotes diaphragm
T986 355-359 PR_EXT:000017653 denotes Fog2

craft-sa-dev

Id Subject Object Predicate Lexical cue
T1128 42-51 VBN denotes evaluated
T1131 5-11 NN denotes defect
T1132 12-15 CC denotes and
T1133 16-25 JJ denotes pulmonary
T1134 26-36 NN denotes hypoplasia
T1135 37-41 VBD denotes were
T1136 52-55 IN denotes for
T1137 56-65 NNS denotes mutations
T1138 66-68 IN denotes in
T1139 69-73 NN denotes FOG2
T1140 73-74 . denotes .
T1141 74-294 sentence denotes Sequence analysis revealed a de novo mutation resulting in a premature stop codon in a child who died on the first day of life secondary to severe bilateral pulmonary hypoplasia and an abnormally muscularized diaphragm.
T1142 75-83 NN denotes Sequence
T1143 84-92 NN denotes analysis
T1144 93-101 VBD denotes revealed
T1145 102-103 DT denotes a
T1146 112-120 NN denotes mutation
T1147 104-106 FW denotes de
T1148 107-111 FW denotes novo
T1149 121-130 VBG denotes resulting
T1150 131-133 IN denotes in
T1151 134-135 DT denotes a
T1152 151-156 NN denotes codon
T1153 136-145 JJ denotes premature
T1154 146-150 NN denotes stop
T1155 157-159 IN denotes in
T1156 160-161 DT denotes a
T1157 162-167 NN denotes child
T1158 168-171 WP denotes who
T1159 172-176 VBD denotes died
T1160 177-179 IN denotes on
T1161 180-183 DT denotes the
T1162 190-193 NN denotes day
T1163 184-189 JJ denotes first
T1164 194-196 IN denotes of
T1165 197-201 NN denotes life
T1166 202-211 JJ denotes secondary
T1167 212-214 IN denotes to
T1168 215-221 JJ denotes severe
T1169 242-252 NN denotes hypoplasia
T1170 222-231 JJ denotes bilateral
T1171 232-241 JJ denotes pulmonary
T1172 253-256 CC denotes and
T1173 257-259 DT denotes an
T1174 284-293 NN denotes diaphragm
T1175 260-270 RB denotes abnormally
T1176 271-283 VBN denotes muscularized
T1177 293-294 . denotes .
T1179 295-300 VBG denotes Using
T1180 338-349 VBN denotes established
T1181 301-302 DT denotes a
T1182 320-328 NN denotes approach
T1183 303-312 NN denotes phenotype
T1184 313-319 VBN denotes driven
T1185 312-313 HYPH denotes -
T1186 328-330 , denotes ,
T1187 330-332 PRP denotes we
T1188 333-337 VBP denotes have
T1189 350-354 IN denotes that
T1191 355-359 NN denotes Fog2
T1192 360-362 VBZ denotes is
R135 T1146 T1144 dobj mutation,revealed
R136 T1147 T1148 advmod de,novo
R137 T1148 T1146 amod novo,mutation
R141 T1152 T1150 pobj codon,in
R142 T1153 T1152 amod premature,codon
R143 T1154 T1152 compound stop,codon
R151 T1162 T1160 pobj day,on
R152 T1163 T1162 amod first,day
R158 T1169 T1167 pobj hypoplasia,to
R159 T1170 T1169 amod bilateral,hypoplasia
R160 T1171 T1169 amod pulmonary,hypoplasia
R163 T1174 T1169 conj diaphragm,hypoplasia
R164 T1175 T1176 advmod abnormally,muscularized
R165 T1176 T1174 amod muscularized,diaphragm
R169 T1182 T1179 dobj approach,Using
R170 T1183 T1184 npadvmod phenotype,driven
R172 T1185 T1184 punct -,driven
R123 T1132 T1131 cc and,defect
R124 T1133 T1134 amod pulmonary,hypoplasia
R125 T1134 T1131 conj hypoplasia,defect
R126 T1135 T1128 auxpass were,evaluated
R127 T1136 T1128 prep for,evaluated
R128 T1137 T1136 pobj mutations,for
R129 T1138 T1137 prep in,mutations
R130 T1139 T1138 pobj FOG2,in
R131 T1140 T1128 punct .,evaluated
R132 T1142 T1143 compound Sequence,analysis
R133 T1143 T1144 nsubj analysis,revealed
R134 T1145 T1146 det a,mutation
R138 T1149 T1146 acl resulting,mutation
R139 T1150 T1149 prep in,resulting
R140 T1151 T1152 det a,codon
R144 T1155 T1152 prep in,codon
R145 T1156 T1157 det a,child
R146 T1157 T1155 pobj child,in
R147 T1158 T1159 dep who,died
R148 T1159 T1157 relcl died,child
R149 T1160 T1159 prep on,died
R150 T1161 T1162 det the,day
R153 T1164 T1162 prep of,day
R154 T1165 T1164 pobj life,of
R155 T1166 T1152 amod secondary,codon
R156 T1167 T1166 prep to,secondary
R157 T1168 T1169 amod severe,hypoplasia
R161 T1172 T1169 cc and,hypoplasia
R162 T1173 T1174 det an,diaphragm
R166 T1177 T1144 punct .,revealed
R167 T1179 T1180 advcl Using,established
R168 T1181 T1182 det a,approach
R171 T1184 T1182 amod driven,approach
R173 T1186 T1180 punct ", ",established
R174 T1187 T1180 nsubj we,established
R175 T1188 T1180 aux have,established