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PMC:1087847 / 33196-33735 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T8971 0-539 sentence denotes Antibodies used in this study were mAb 203–217 directed against the core domain of mouse Annexin A7 [6] (purified IgG, 1:50) specifically recognizing both Annexin A7 isoforms [[6,10], and data not shown], a polyclonal antibody against mouse Annexin A7 [10] (1:200), a polyclonal antiserum raised against the astrocyte-specific intermediate filament glial fibrillary acidic protein (GFAP; DAKO, 1:400), anti-β-tubulin (Sigma, 1:1000), anti-Emerin (novocastra, 1:2000), and polyclonal anti-LAP2α (kindly provided by Ronald Foisner, 1:5000).
T8972 1-11 NNS denotes Antibodies
T8973 31-35 VBD denotes were
T8974 12-16 VBN denotes used
T8975 17-19 IN denotes in
T8976 20-24 DT denotes this
T8977 25-30 NN denotes study
T8978 36-39 NN denotes mAb
T8979 40-43 CD denotes 203
T8980 43-44 SYM denotes –
T8981 44-47 CD denotes 217
T8982 48-56 VBN denotes directed
T8983 57-64 IN denotes against
T8984 65-68 DT denotes the
T8985 74-80 NN denotes domain
T8986 69-73 NN denotes core
T8987 81-83 IN denotes of
T8988 84-89 NN denotes mouse
T8989 98-100 NN denotes A7
T8990 90-97 NN denotes Annexin
T8991 101-102 -LRB- denotes [
T8992 102-103 CD denotes 6
T8993 103-104 -RRB- denotes ]
T8994 105-106 -LRB- denotes (
T8995 120-121 CD denotes 1
T8996 106-114 VBN denotes purified
T8997 115-118 NN denotes IgG
T8998 118-120 , denotes ,
T8999 121-122 SYM denotes :
T9000 122-124 CD denotes 50
T9001 124-125 -RRB- denotes )
T9002 126-138 RB denotes specifically
T9003 139-150 VBG denotes recognizing
T9004 151-155 DT denotes both
T9005 167-175 NNS denotes isoforms
T9006 156-163 NN denotes Annexin
T9007 164-166 NN denotes A7
T9008 176-177 -LRB- denotes [
T9009 180-182 CD denotes 10
T9010 177-178 -LRB- denotes [
T9011 178-179 CD denotes 6
T9012 179-180 , denotes ,
T9013 182-183 -RRB- denotes ]
T9014 183-185 , denotes ,
T9015 185-188 CC denotes and
T9016 189-193 NNS denotes data
T9017 198-203 VBN denotes shown
T9018 194-197 RB denotes not
T9019 203-204 -RRB- denotes ]
T9020 204-206 , denotes ,
T9021 206-207 DT denotes a
T9022 219-227 NN denotes antibody
T9023 208-218 JJ denotes polyclonal
T9024 228-235 IN denotes against
T9025 236-241 NN denotes mouse
T9026 250-252 NN denotes A7
T9027 242-249 NN denotes Annexin
T9028 253-254 -LRB- denotes [
T9029 254-256 CD denotes 10
T9030 256-257 -RRB- denotes ]
T9031 258-259 -LRB- denotes (
T9032 259-260 CD denotes 1
T9033 260-261 SYM denotes :
T9034 261-264 CD denotes 200
T9035 264-265 -RRB- denotes )
T9036 265-267 , denotes ,
T9037 267-268 DT denotes a
T9038 280-289 NN denotes antiserum
T9039 269-279 JJ denotes polyclonal
T9040 290-296 VBN denotes raised
T9041 297-304 IN denotes against
T9042 305-308 DT denotes the
T9043 374-381 NN denotes protein
T9044 309-318 NN denotes astrocyte
T9045 319-327 JJ denotes specific
T9046 318-319 HYPH denotes -
T9047 328-340 JJ denotes intermediate
T9048 341-349 NN denotes filament
T9049 350-355 JJ denotes glial
T9050 356-366 JJ denotes fibrillary
T9051 367-373 JJ denotes acidic
T9052 382-383 -LRB- denotes (
T9053 389-393 NN denotes DAKO
T9054 383-387 NN denotes GFAP
T9055 387-388 : denotes ;
T9056 393-395 , denotes ,
T9057 395-396 CD denotes 1
T9058 396-397 SYM denotes :
T9059 397-400 CD denotes 400
T9060 400-401 -RRB- denotes )
T9061 401-403 , denotes ,
T9062 403-409 JJ denotes anti-β
T9063 410-417 NN denotes tubulin
T9064 409-410 HYPH denotes -
T9065 418-419 -LRB- denotes (
T9066 426-427 CD denotes 1
T9067 419-424 NNP denotes Sigma
T9068 424-426 , denotes ,
T9069 427-428 SYM denotes :
T9070 428-432 CD denotes 1000
T9071 432-433 -RRB- denotes )
T9072 433-435 , denotes ,
T9073 435-446 NN denotes anti-Emerin
T9074 447-448 -LRB- denotes (
T9075 460-461 CD denotes 1
T9076 448-458 NNP denotes novocastra
T9077 458-460 , denotes ,
T9078 461-462 SYM denotes :
T9079 462-466 CD denotes 2000
T9080 466-467 -RRB- denotes )
T9081 467-469 , denotes ,
T9082 469-472 CC denotes and
T9083 473-483 JJ denotes polyclonal
T9084 484-494 NN denotes anti-LAP2α
T9085 495-496 -LRB- denotes (
T9086 496-502 RB denotes kindly
T9087 503-511 VBN denotes provided
T9088 512-514 IN denotes by
T9089 515-521 NNP denotes Ronald
T9090 522-529 NNP denotes Foisner
T9091 529-531 , denotes ,
T9092 531-532 CD denotes 1
T9093 532-533 SYM denotes :
T9094 533-537 CD denotes 5000
T9095 537-538 -RRB- denotes )
T9096 538-539 . denotes .
R4430 T8972 T8973 nsubj Antibodies,were
R4431 T8974 T8972 acl used,Antibodies
R4432 T8975 T8974 prep in,used
R4433 T8976 T8977 det this,study
R4434 T8977 T8975 pobj study,in
R4435 T8978 T8979 nmod mAb,203
R4436 T8979 T8973 attr 203,were
R4437 T8980 T8981 punct –,217
R4438 T8981 T8979 prep 217,203
R4439 T8982 T8979 acl directed,203
R4440 T8983 T8982 prep against,directed
R4441 T8984 T8985 det the,domain
R4442 T8985 T8983 pobj domain,against
R4443 T8986 T8985 compound core,domain
R4444 T8987 T8985 prep of,domain
R4445 T8988 T8989 compound mouse,A7
R4446 T8989 T8987 pobj A7,of
R4447 T8990 T8989 compound Annexin,A7
R4448 T8991 T8992 punct [,6
R4449 T8992 T8989 parataxis 6,A7
R4450 T8993 T8992 punct ],6
R4451 T8994 T8995 punct (,1
R4452 T8995 T8989 parataxis 1,A7
R4453 T8996 T8997 amod purified,IgG
R4454 T8997 T8995 dep IgG,1
R4455 T8998 T8995 punct ", ",1
R4456 T8999 T9000 punct :,50
R4457 T9000 T8995 prep 50,1
R4458 T9001 T8995 punct ),1
R4459 T9002 T9003 advmod specifically,recognizing
R4460 T9003 T8973 advcl recognizing,were
R4461 T9004 T9005 det both,isoforms
R4462 T9005 T9003 dobj isoforms,recognizing
R4463 T9006 T9007 compound Annexin,A7
R4464 T9007 T9005 compound A7,isoforms
R4465 T9008 T9009 punct [,10
R4466 T9009 T9005 parataxis 10,isoforms
R4467 T9010 T9009 punct [,10
R4468 T9011 T9009 nummod 6,10
R4469 T9012 T9009 punct ",",10
R4470 T9013 T9009 punct ],10
R4471 T9014 T9009 punct ", ",10
R4472 T9015 T9009 cc and,10
R4473 T9016 T9017 nsubj data,shown
R4474 T9017 T9009 conj shown,10
R4475 T9018 T9017 neg not,shown
R4476 T9019 T9017 punct ],shown
R4477 T9020 T9005 punct ", ",isoforms
R4478 T9021 T9022 det a,antibody
R4479 T9022 T9005 conj antibody,isoforms
R4480 T9023 T9022 amod polyclonal,antibody
R4481 T9024 T9022 prep against,antibody
R4482 T9025 T9026 compound mouse,A7
R4483 T9026 T9024 pobj A7,against
R4484 T9027 T9026 compound Annexin,A7
R4485 T9028 T9029 punct [,10
R4486 T9029 T9022 parataxis 10,antibody
R4487 T9030 T9029 punct ],10
R4488 T9031 T9032 punct (,1
R4489 T9032 T9022 parataxis 1,antibody
R4490 T9033 T9034 punct :,200
R4491 T9034 T9032 prep 200,1
R4492 T9035 T9032 punct ),1
R4493 T9036 T9022 punct ", ",antibody
R4494 T9037 T9038 det a,antiserum
R4495 T9038 T9022 conj antiserum,antibody
R4496 T9039 T9038 amod polyclonal,antiserum
R4497 T9040 T9038 acl raised,antiserum
R4498 T9041 T9040 prep against,raised
R4499 T9042 T9043 det the,protein
R4500 T9043 T9041 pobj protein,against
R4501 T9044 T9045 npadvmod astrocyte,specific
R4502 T9045 T9043 amod specific,protein
R4503 T9046 T9045 punct -,specific
R4504 T9047 T9048 amod intermediate,filament
R4505 T9048 T9043 nmod filament,protein
R4506 T9049 T9043 amod glial,protein
R4507 T9050 T9043 amod fibrillary,protein
R4508 T9051 T9043 amod acidic,protein
R4509 T9052 T9053 punct (,DAKO
R4510 T9053 T9038 parataxis DAKO,antiserum
R4511 T9054 T9053 dep GFAP,DAKO
R4512 T9055 T9053 punct ;,DAKO
R4513 T9056 T9053 punct ", ",DAKO
R4514 T9057 T9053 appos 1,DAKO
R4515 T9058 T9059 punct :,400
R4516 T9059 T9057 prep 400,1
R4517 T9060 T9053 punct ),DAKO
R4518 T9061 T9038 punct ", ",antiserum
R4519 T9062 T9063 amod anti-β,tubulin
R4520 T9063 T9038 conj tubulin,antiserum
R4521 T9064 T9063 punct -,tubulin
R4522 T9065 T9066 punct (,1
R4523 T9066 T9063 parataxis 1,tubulin
R4524 T9067 T9066 dep Sigma,1
R4525 T9068 T9066 punct ", ",1
R4526 T9069 T9070 punct :,1000
R4527 T9070 T9066 prep 1000,1
R4528 T9071 T9066 punct ),1
R4529 T9072 T9063 punct ", ",tubulin
R4530 T9073 T9063 conj anti-Emerin,tubulin
R4531 T9074 T9075 punct (,1
R4532 T9075 T9073 parataxis 1,anti-Emerin
R4533 T9076 T9075 dep novocastra,1
R4534 T9077 T9075 punct ", ",1
R4535 T9078 T9079 punct :,2000
R4536 T9079 T9075 prep 2000,1
R4537 T9080 T9075 punct ),1
R4538 T9081 T9073 punct ", ",anti-Emerin
R4539 T9082 T9073 cc and,anti-Emerin
R4540 T9083 T9084 amod polyclonal,anti-LAP2α
R4541 T9084 T9073 conj anti-LAP2α,anti-Emerin
R4542 T9085 T9084 punct (,anti-LAP2α
R4543 T9086 T9087 advmod kindly,provided
R4544 T9087 T9084 acl provided,anti-LAP2α
R4545 T9088 T9087 agent by,provided
R4546 T9089 T9090 compound Ronald,Foisner
R4547 T9090 T9088 pobj Foisner,by
R4548 T9091 T9092 punct ", ",1
R4549 T9092 T9084 parataxis 1,anti-LAP2α
R4550 T9093 T9094 punct :,5000
R4551 T9094 T9092 prep 5000,1
R4552 T9095 T9092 punct ),1
R4553 T9096 T8973 punct .,were

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T8948 1-11 GO:0042571 denotes Antibodies
T8949 48-56 GO_EXT:biological_direction_or_guidance denotes directed
T8950 74-80 SO_EXT:0000417 denotes domain
T8951 84-89 NCBITaxon:10088 denotes mouse
T8952 90-100 PR_EXT:000004080 denotes Annexin A7
T8953 115-118 GO:0071735 denotes IgG
T8954 156-166 PR_EXT:000004080 denotes Annexin A7
T8955 167-175 SO_EXT:0001060 denotes isoforms
T8956 219-227 GO:0042571 denotes antibody
T8957 236-241 NCBITaxon:10088 denotes mouse
T8958 242-252 PR_EXT:000004080 denotes Annexin A7
T8959 284-289 UBERON:0001977 denotes serum
T8960 309-318 CL:0000127 denotes astrocyte
T8961 328-349 GO:0005882 denotes intermediate filament
T8962 350-355 CL:0000125 denotes glial
T8963 350-381 PR_EXT:000007939 denotes glial fibrillary acidic protein
T8964 367-373 CHEBI_EXT:37527 denotes acidic
T8965 374-381 CHEBI_PR_EXT:protein denotes protein
T8966 383-387 PR_EXT:000007939 denotes GFAP
T8967 410-417 PR_EXT:000028799 denotes tubulin
T8968 440-446 PR_EXT:000007050 denotes Emerin
T8969 489-494 PR_EXT:000037206 denotes LAP2α

biosemtest

Id Subject Object Predicate Lexical cue
T8842 71-75 UMLS/C1706352 denotes re d
T8843 292-298 UMLS/C0442818 denotes ised a
T8844 92-102 UMLS/C1412427 denotes nexin A7 [
T8845 158-168 UMLS/C1412427 denotes nexin A7 i
T8846 244-254 UMLS/C1412427 denotes nexin A7 [
T8847 25-30 UMLS/C1705923 denotes study
T8848 108-116 UMLS/C1998793 denotes rified I
T8849 352-383 UP/Q28115 denotes ial fibrillary acidic protein (
T8850 71-75 UMLS/C1820374 denotes re d
T8851 352-383 UP/Q58EE9 denotes ial fibrillary acidic protein (
T8852 321-329 UMLS/C0205369 denotes ecific i
T8853 92-102 UP/Q92125 denotes nexin A7 [
T8854 158-168 UP/Q92125 denotes nexin A7 i
T8855 244-254 UP/Q92125 denotes nexin A7 [
T8856 25-30 UMLS/C0947630 denotes study
T8857 76-82 UMLS/C1883221 denotes main o
T8858 25-30 UMLS/C2349977 denotes study
T8859 25-30 UMLS/C0557651 denotes study
T8860 117-120 UMLS/C0020852 denotes G,
T8861 330-351 UMLS/C0021770 denotes termediate filament g
T8862 59-66 UMLS/C0521124 denotes ainst t
T8863 230-237 UMLS/C0521124 denotes ainst m
T8864 299-306 UMLS/C0521124 denotes ainst t
T8865 25-30 UMLS/C2603343 denotes study
T8866 92-102 UP/Q4R5L5 denotes nexin A7 [
T8867 158-168 UP/Q4R5L5 denotes nexin A7 i
T8868 244-254 UP/Q4R5L5 denotes nexin A7 [
T8869 92-102 UP/P20073 denotes nexin A7 [
T8870 158-168 UP/P20073 denotes nexin A7 i
T8871 244-254 UP/P20073 denotes nexin A7 [
T8872 117-120 UMLS/C0202087 denotes G,
T8873 352-383 UP/P47819 denotes ial fibrillary acidic protein (
T8874 352-383 UP/P14136 denotes ial fibrillary acidic protein (
T8876 1-11 UMLS/C1621287 denotes Antibodies
T8877 507-515 UMLS/C0359589 denotes ided by
T8878 76-82 UMLS/C1883204 denotes main o
T8879 210-229 UMLS/C0312586 denotes lyclonal antibody a
T8880 352-383 UP/Q5RA72 denotes ial fibrillary acidic protein (
T8881 412-420 UMLS/C0041348 denotes bulin (S
T8882 422-427 UMLS/C0227391 denotes ma, 1
T8883 321-329 UMLS/C1552740 denotes ecific i
T8884 352-383 UMLS/C1325793 denotes ial fibrillary acidic protein (
T8885 385-389 UMLS/C1325793 denotes AP;
T8886 25-30 UMLS/C0008976 denotes study
T8887 25-30 UMLS/C0008972 denotes study
T8888 71-75 UMLS/C0444669 denotes re d
T8889 311-320 UMLS/C0004112 denotes trocyte-s
T8890 196-199 UMLS/C1518422 denotes t s
T8891 25-30 UMLS/C1880229 denotes study
T8892 92-102 UMLS/C0103408 denotes nexin A7 [
T8893 158-168 UMLS/C0103408 denotes nexin A7 i
T8894 244-254 UMLS/C0103408 denotes nexin A7 [
T8895 92-102 UP/Q07076 denotes nexin A7 [
T8896 158-168 UP/Q07076 denotes nexin A7 i
T8897 244-254 UP/Q07076 denotes nexin A7 [
T8898 282-291 UMLS/C0020960 denotes tiserum r
T8899 50-58 UMLS/C1947931 denotes rected a
T8900 50-58 UMLS/C0439851 denotes rected a
T8901 71-75 UMLS/C0008489 denotes re d
T8902 92-102 UP/P24639 denotes nexin A7 [
T8903 158-168 UP/P24639 denotes nexin A7 i
T8904 244-254 UP/P24639 denotes nexin A7 [
T8905 352-383 UMLS/C0017626 denotes ial fibrillary acidic protein (
T8906 385-389 UMLS/C0017626 denotes AP;
T8907 352-383 UP/P03995 denotes ial fibrillary acidic protein (
T8908 169-177 UMLS/C0597298 denotes oforms [
T8910 1-11 UMLS/C0003241 denotes Antibodies
T8911 92-102 UP/P20072 denotes nexin A7 [
T8912 158-168 UP/P20072 denotes nexin A7 i
T8913 244-254 UP/P20072 denotes nexin A7 [
T8914 352-383 UMLS/C1415042 denotes ial fibrillary acidic protein (
T8915 385-389 UMLS/C1415042 denotes AP;
T8916 50-58 UMLS/C1552596 denotes rected a
T8918 1-11 UMLS/C0021027 denotes Antibodies
T8919 352-383 UP/P48677 denotes ial fibrillary acidic protein (
T8920 71-75 UMLS/C1882467 denotes re d
T8921 422-427 UMLS/C1719918 denotes ma, 1
T8922 76-82 UMLS/C1880389 denotes main o
T8923 76-82 UMLS/C1514562 denotes main o
T8924 191-195 UMLS/C1511726 denotes ta n
T8925 20-24 UMLS/C0323983 denotes this

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T8927 1-11 GO:0042571 denotes Antibodies
T8928 74-80 SO:0000417 denotes domain
T8929 84-89 NCBITaxon:10088 denotes mouse
T8930 90-100 PR:000004080 denotes Annexin A7
T8931 115-118 GO:0071735 denotes IgG
T8932 156-166 PR:000004080 denotes Annexin A7
T8933 167-175 SO:0001060 denotes isoforms
T8934 219-227 GO:0042571 denotes antibody
T8935 236-241 NCBITaxon:10088 denotes mouse
T8936 242-252 PR:000004080 denotes Annexin A7
T8937 284-289 UBERON:0001977 denotes serum
T8938 309-318 CL:0000127 denotes astrocyte
T8939 328-349 GO:0005882 denotes intermediate filament
T8940 350-355 CL:0000125 denotes glial
T8941 350-381 PR:000007939 denotes glial fibrillary acidic protein
T8942 367-373 CHEBI:37527 denotes acidic
T8943 383-387 PR:000007939 denotes GFAP
T8944 410-417 PR:000028799 denotes tubulin
T8945 440-446 PR:000007050 denotes Emerin
T8946 489-494 PR:000037206 denotes LAP2α