BB-norm@ldeleger:BB-norm-23702192 JSONTXT

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bionlp-ost-19-BB-norm-train

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-99 Title denotes Clinical factors associated with development of severe-complicated Clostridium difficile infection.
T6 67-88 Microorganism denotes Clostridium difficile 1496
T2 100-379 Paragraph denotes Clostridium difficile infection (CDI) can cause life-threatening complications. Severe-complicated CDI is characterized by hypotension, shock, sepsis, ileus, megacolon, and colon perforation. We created a model to identify clinical factors associated with severe-complicated CDI.
T7 100-121 Microorganism denotes Clostridium difficile 1496
T8 273-278 Habitat denotes colon OBT:001496
T3 380-1316 Paragraph denotes We analyzed data from 1446 inpatient cases of CDI (48.6% female; median age, 62.5 years; range, 0.1-103.7 years) at the Mayo Clinic from June 28, 2007, to June 25, 2010. Patients with severe-complicated CDI (n = 487) were identified as those who required admission to the intensive care unit or colectomy, or died, within 30 days of CDI diagnosis. Logistic regression models were used to identify variables that were independently associated with the occurrence of severe-complicated CDI in 2 cohorts. One cohort comprised all hospitalized patients; the other comprised a subset of these inpatients who were residents of Olmsted County, Minnesota to assess the association of comorbid conditions with the development of severe-complicated infection in a population-based cohort. The linear combinations of variables identified by using logistic regression models provided scores to predict the risk of developing severe-complicated CDI.
T9 407-492 Habitat denotes inpatient cases of CDI (48.6% female; median age, 62.5 years; range, 0.1-103.7 years) OBT:003269
T10 500-511 Habitat denotes Mayo Clinic OBT:002694
T11 550-586 Habitat denotes Patients with severe-complicated CDI OBT:003269
T12 652-671 Habitat denotes intensive care unit OBT:000328
T13 907-928 Habitat denotes hospitalized patients OBT:003269
T14 907-919 Habitat denotes hospitalized OBT:002714
T15 968-978 Habitat denotes inpatients OBT:003269
T16 1134-1157 Habitat denotes population-based cohort OBT:003269
T4 1317-1758 Paragraph denotes In a multivariable model that included all inpatients, increasing age, leukocyte count >15 × 10(9)/L, increase in serum level of creatinine >1.5-fold from baseline, and use of proton pump inhibitors or narcotic medications were independently associated with severe-complicated CDI. In the secondary analysis, which included only patients from Olmsted County, comorbid conditions were not significantly associated with severe-complicated CDI.
T17 1360-1370 Habitat denotes inpatients OBT:003269
T18 1388-1397 Habitat denotes leukocyte OBT:000706
T19 1431-1436 Habitat denotes serum OBT:000524
T20 1646-1654 Habitat denotes patients OBT:003269
T5 1759-2080 Paragraph denotes Older age, high numbers of leukocytes in blood samples, an increased serum level of creatinine, gastric acid suppression, and use of narcotic medications were independently associated with development of severe-complicated CDI in hospitalized patients. Early aggressive monitoring and intervention could improve outcomes.
T21 1786-1796 Habitat denotes leukocytes OBT:000706
T22 1800-1813 Habitat denotes blood samples OBT:000521
T23 1828-1833 Habitat denotes serum OBT:000524
T25 1855-1867 Habitat denotes gastric acid OBT:000640
T24 1855-1862 Habitat denotes gastric OBT:001792
T27 1989-2010 Habitat denotes hospitalized patients OBT:003269
T26 1989-2001 Habitat denotes hospitalized OBT:002714