| GlyCosmos15 | | Collection of annotations to the abstracts from the following journals:
Analytical_Chemistry
Biochim_Biophys_Acta
Carbohydrate_Research
Cell
Glycobiology
Glycoconjugate_Journal
J_Am_Chem_Soc
Journal_of_Biological_Chemistry
Journal_of_Proteome_Research
Journal_of_Proteomics
Molecular_and_Cellular_Proteomics
Nature_Biotechnology
Nature_Communications
Nature_Methods
Scientific_Reports
| Jin-Dong Kim | 2024-12-19 | |
| Glycosmos6 | | This collection contains annotation projects
which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals:
Glycobiology
Glycoconjugate journal
The Journal of biological chemistry
Journal of proteome research
Journal of proteomics
Carbohydrate research
| Jin-Dong Kim | 2023-11-16 | |
| CORD-19 | | CORD-19 (COVID-19 Open Research Dataset) is a free, open resource for the global research community provided by the Allen Institute for AI: https://pages.semanticscholar.org/coronavirus-research.
As of 2020-03-20, it contains over 29,000 full text articles. This CORD-19 collection at PubAnnotation is prepared for the purpose of collecting annotations to the texts, so that they can be easily accessed and utilized.
If you want to contribute with your annotation,
take the documents in the
CORD-19_All_docs project,
produce your annotation to the texts using your annotation system, and
contribute the annotation back to PubAnnotation (HowTo).
All the contributed annotations will become publicly available.
Please note that, during uploading your annotation data, you do not need to be worried about slight changes in the text: PubAnnotation will automatically catch them and adjust the positions appropriately.
Once you have uploaded your annotation, please notify it to admin@pubannotation.org
admin@pubannotation.org, so that it can be included in this collection, which will make your annotation much easily findable.
Note that as the CORD-19 dataset grows, the documents in this collection also will be updated.
IMPORTANT: CORD-19 License agreement requires that the dataset must be used for text and data mining only. | Jin-Dong Kim | 2020-04-14 | |
| NCBI-Disease-Corpus-Collection | | Different sets of disease corpus are stored in this collection, including train,dev,test,LLM-generated,and LLM-Assitant-generated. | Kenkim | 2025-01-17 | |
| bionlp-ost-19-BB-rel | | BB-rel subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019. BB-rel is a relation extraction task.
Homepage of Bacteria Biotope: https://sites.google.com/view/bb-2019/home
| ldeleger | 2020-02-07 | |
| bionlp-ost-19-BB-norm | | BB-norm subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019.
BB-norm is an entity normalization task. | ldeleger | 2020-02-07 | |
| bionlp-ost-19-BB-norm-ner | | BB-norm+ner subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019. BB-norm+ner is an entity recognition and normalization task. | ldeleger | 2020-02-07 | |
| bionlp-ost-19-BB-rel-ner | | BB-rel+ner subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019. BB-rel+ner is an entity recognition and relation extraction task.
Homepage of Bacteria Biotope: https://sites.google.com/view/bb-2019/home | ldeleger | 2020-02-07 | |
| bionlp-ost-19-BB-kb | | BB-kb subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019. BB-kb is an entity normalization and relation extraction task.
Homepage of Bacteria Biotope: https://sites.google.com/view/bb-2019/home | ldeleger | 2020-02-07 | |
| bionlp-ost-19-BB-kb-ner | | BB-kb+ner subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019. BB-kb+ner is an entity recognition, normalization and relation extraction task.
Homepage of Bacteria Biotope: https://sites.google.com/view/bb-2019/home | ldeleger | 2020-02-07 | |
| bionlp-ost-19-SeeDev-binary | | SeeDev-binary subtask of the SeeDev task proposed at BioNLP-OST 2019. SeeDev-binary is a binary relation extraction task.
Homepage of SeeDev: https://sites.google.com/view/seedev2019/home | ldeleger | 2020-02-07 | |
| Linmchun_800 | | | Linmchun | 2024-08-28 | |
| luoyt2021_800_3 | | | luoyt2021 | 2024-08-27 | |
| luoyt2021_800 | | | luoyt2021 | 2024-08-27 | |
| maxiaofeng52 | | | maxiaofeng52 | 2024-08-25 | |
| maxiaofeng52_800_2 | | | maxiaofeng52 | 2024-08-28 | |
| RDoCTask | | | mmanani1s | 2019-03-16 | |
| 190926 | | | nakazato | 2019-09-26 | |
| ngly1-deficiency | | | Nuria | 2020-02-06 | |
| Grays | | | okubo | 2019-03-11 | |
