> top > collections

Collections

NameS DescriptionMaintainerUpdated_at

21-38 / 38 show all
Glycan AbbreviationGlycan-Abbreviation in GlycoNAVIISSAKU YAMADA2019-07-17
med-device-indicationsPMA approval statements describing indications of class III devicestherightstef2020-02-05
ngly1-deficiencyNuria2020-02-06
Annotation of Human Phenotype-Gene Relations - Identification of Negative, False, and Unknown RelationsAccessible negative results are relevant for researchers and clinicians not only to limit their search space but also to prevent the costly re-exploration of the hypothesis. However, most biomedical relation extraction data sets do not seek to distinguish between a false and a negative relation. A false relation should express a context where the entities are not related. In contrast, a negative relation should express a context where there is an affirmation of no association between the two entities. Furthermore, when we are dealing with data sets created using distant supervision techniques, we also have some false negative relations that constitute undocumented/unknown relations. Unknown relations are good examples to further exploration by researchers and clinicians. We propose to improve the distinction between these two concepts, by revising the false relations of the PGR corpus with regular expressions.dpavot2020-02-21
GlyCosmos600A random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.Jin-Dong Kim2021-10-22
bionlp-st-ge-2016The 2016 edition of the Genia event extraction (GE) task organized within BioNLP-ST 2016Jin-Dong Kim2019-03-11
bionlp-ost-19-BB-rel-nerBB-rel+ner subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019. BB-rel+ner is an entity recognition and relation extraction task. Homepage of Bacteria Biotope: https://sites.google.com/view/bb-2019/homeldeleger2020-02-07
AGACThis is the collection for AGAC track data, a subtask in BioNLP OST 2019, Hong Kong. xiajingbo2019-03-13
RDoCTaskmmanani1s2019-03-16
bionlp-ost-19-BB-kbBB-kb subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019. BB-kb is an entity normalization and relation extraction task. Homepage of Bacteria Biotope: https://sites.google.com/view/bb-2019/homeldeleger2020-02-07
bionlp-ost-19-BB-kb-nerBB-kb+ner subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019. BB-kb+ner is an entity recognition, normalization and relation extraction task. Homepage of Bacteria Biotope: https://sites.google.com/view/bb-2019/homeldeleger2020-02-07
bionlp-ost-19-SeeDev-binarySeeDev-binary subtask of the SeeDev task proposed at BioNLP-OST 2019. SeeDev-binary is a binary relation extraction task. Homepage of SeeDev: https://sites.google.com/view/seedev2019/homeldeleger2020-02-07
190926nakazato2019-09-26
LASIGE: Annotating a multilingual COVID-19-related corpus for BLAH7The global motivation is the creation of parallel multilingual datasets for text mining systems in COVID-19-related literature. Tracking the most recent advances in the COVID-19-related research is essential given the novelty of the disease and its impact on society. Still, the pace of publication requires automatic approaches to access and organize the knowledge that keeps being produced every day. It is necessary to develop text mining pipelines to assist in that task, which is only possible with evaluation datasets. However, there is a lack of COVID-19-related datasets, even more, if considering other languages besides English. The expected contribution of the project will be the annotation of a multilingual parallel dataset (EN-PT), providing this resource to the community to improve the text mining research on COVID-19-related literature.dpavot2021-02-17
NeuroBridge Testraywang2021-05-13
bionlp-ost-19-BB-normBB-norm subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019. BB-norm is an entity normalization task.ldeleger2020-02-07
bionlp-ost-19-BB-norm-nerBB-norm+ner subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019. BB-norm+ner is an entity recognition and normalization task.ldeleger2020-02-07
bionlp-ost-19-BB-relBB-rel subtask of the Bacteria Biotope task proposed at BioNLP-OST 2019. BB-rel is a relation extraction task. Homepage of Bacteria Biotope: https://sites.google.com/view/bb-2019/home ldeleger2020-02-07