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User 'Jin-Dong Kim'


NameDescriptionUpdated at
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GlycoBiologyAnnotations made to the titles and abstracts of the journal 'GlycoBiology'2019-03-10
PreeclampsiaPreeclampsia-related annotations for text mining2019-03-10
bionlp-st-ge-2016The 2016 edition of the Genia event extraction (GE) task organized within BioNLP-ST 20162019-03-11
GlyCosmos600A random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.2019-06-11


NameTDescription# Ann.Updated atStatus
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NCBITAXONannotation for NCBI taxonomy6.54 K2019-07-16Testing
NGLY1-deficiencyA collection of PubMed abstracts that may be related to NGLY1 deficiency.60.7 K2018-12-28Developing
preeclampsia_genes17.9 K2019-06-06Developing
GlyCosmos600-FMA7.13 K2019-08-16
pubmed-enju-pasAnnotating PubMed abstracts for predicate-argument structure (PAS). Enju 2.4.2 is used to automatically compute PAS.19.1 M2019-08-16Developing
mondo_diseaseannotation for diseases and disorders as defined in MONDO.1.39 K2019-08-20Testing

Automatic annotators

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PD-UBERON-AE-BIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
PubTator-ChemicalTo pull the pre-computed chemical annotation from PubTator.
PubTator-GeneTo pull the pre-computed gene annotation from PubTator.
PubTator-SpeciesTo pull the pre-computed Species annotation from PubTator.
TextSentencersentence segmentation
PubTator-DiseaseTo pull the pre-computed disease annotation from PubTator.
PubTator-MutationTo pull the pre-computed mutation annotation from PubTator.


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TextAEIt is a "Text Annotation Editor" developed by DBCLS. It is developed as a model implementation of PubAnnotation-interoperable viewer/editor.
TextAE-DevIt is a development version of TextAE. While this version has richer features, there is a chance of some bugs.