> top > users > Jin-Dong Kim

User 'Jin-Dong Kim'

Collections

NameDescriptionUpdated at
1-4 / 4
GlycoBiologyAnnotations made to the titles and abstracts of the journal 'GlycoBiology'2019-03-10
PreeclampsiaPreeclampsia-related annotations for text mining2019-03-10
bionlp-st-ge-2016The 2016 edition of the Genia event extraction (GE) task organized within BioNLP-ST 20162019-03-11
GlyCosmos600A random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.2019-06-11

Projects

NameTDescription# Ann.Updated atStatus
41-50 / 57 show all
performance-testa project for performance test487 K2018-07-15Testing
MyTest7.32 K2019-06-24Testing
UBERON-AEAnnotation for anatomical entities based on the "Anatomical Entity" subtree of UBERON ontology. Annotations are automatically produced using PubDictionaries with threshold: 0.85.865 K2018-01-27Developing
genia-medco-corefCoreference annotation made to the Genia corpus, following the MUC annotation scheme. It is a product of the collaboration between the Genia and the MedCo projects.46.1 K2017-09-02Developing
GlyCosmos-GlycanStructure-c02019-06-11Testing
GlyCosmos600-docsA random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.02019-06-11Released
GlyCosmos600-GlycanStructure972019-06-11Testing
GlycoBiology-Motifs4.15 K2017-09-09
pubmed-2016abstracts published in 201602017-09-03
PubCasesCollectionabstracts in PubCases02017-09-08

Automatic annotators

NameDescription
1-10 / 19 show all
TextSentencersentence segmentation
EnjuParserEnju HPSG Parser developed by University of Tokyo.
PD-UBERON-AE-BIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.
PD-Preeclampsia-B
PD-UBERON-AEIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
PD-GlycoGenes-B
PubTator-ChemicalTo pull the pre-computed chemical annotation from PubTator.
PubTator-GeneTo pull the pre-computed gene annotation from PubTator.
PubTator-SpeciesTo pull the pre-computed Species annotation from PubTator.

Editors

NameDescription
1-2 / 2
TextAE-DevIt is a development version of TextAE. While this version has richer features, there is a chance of some bugs.
TextAEIt is a "Text Annotation Editor" developed by DBCLS. It is developed as a model implementation of PubAnnotation-interoperable viewer/editor.