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User 'Jin-Dong Kim'

Collections

NameDescriptionUpdated at
1-3 / 3
GlycoBiologyAnnotations made to the titles and abstracts of the journal 'GlycoBiology'2019-03-10
PreeclampsiaPreeclampsia-related annotations for text mining2019-03-10
bionlp-st-ge-2016The 2016 edition of the Genia event extraction (GE) task organized within BioNLP-ST 20162019-03-11

Projects

NameTDescription# Ann.Updated atStatus
41-48 / 48 show all
GlycoBiology-Motifs4.15 K2017-09-09
pubmed-2016abstracts published in 201602017-09-03
PubCasesCollectionabstracts in PubCases02017-09-08
Parkinson542017-03-11Testing
sentencesSentence segmentation annotation1.17 M2017-10-19Testing
NGLY1-deficiencyA collection of PubMed abstracts that may be related to NGLY1 deficiency.60.7 K2018-12-28Developing
pubmed-enju-pasAnnotating PubMed abstracts for predicate-argument structure (PAS). Enju 2.4.2 is used to automatically compute PAS.18.9 M2017-11-09Developing
preeclampsia_genes17.9 K2019-02-22Developing

Automatic annotators

NameDescription
1-10 / 15 show all
TextSentencersentence segmentation
EnjuParserEnju HPSG Parser developed by University of Tokyo.
PD-UBERON-AE-BIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.
PD-GlycoGenes-B
PD-Preeclampsia-B
PD-UBERON-AEIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
PubTator-ChemicalTo pull the pre-computed chemical annotation from PubTator.
PubTator-GeneTo pull the pre-computed gene annotation from PubTator.
PubTator-SpeciesTo pull the pre-computed Species annotation from PubTator.

Editors

NameDescription
1-2 / 2
TextAE-DevIt is a development version of TextAE. While this version has richer features, there is a chance of some bugs.
TextAEIt is a "Text Annotation Editor" developed by DBCLS. It is developed as a model implementation of PubAnnotation-interoperable viewer/editor.