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NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 369 show all
LocTextThe manually annotated corpus consists of 100 PubMed abstracts annotated for proteins, subcellular localizations, organisms and relations between them. The focus of the corpus is on annotation of proteins and their subcellular localizations.2.29 KGoldberg et alShrikant Vinchurkar2020-02-01Released
PIR-corpus2The protein tag was used to tag proteins, or protein-associated or -related objects, such as domains, pathways, expression of gene. Annotation guideline: http://pir.georgetown.edu/pirwww/about/doc/manietal.pdf5.52 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2020-02-01Released
BioLarkPubmedHPO228 abstracts manually annotated with Human Phenotype Ontology (HPO) concepts and harmonized by three curators, which can be used as a reference standard for free text annotation of human phenotypes. For more info, please see Groza et al. "Automatic concept recognition using the human phenotype ontology reference and test suite corpora", 2015.7.24 KTudor Grozasimon2020-02-01Released
DisGeNET5_variant_diseaseThe file contains variant-disease associations obtained by text mining MEDLINE abstracts using the BeFree system, including the variant and disease off sets. 144 KIBI GroupYue Wang2020-02-01Released
DisGeNET5_gene_diseaseThe file contains gene-disease associations obtained by text mining MEDLINE abstracts using the BeFree system including the gene and disease off sets.2.04 MIBI GroupYue Wang2020-02-02Released
GENIAcorpus multi_cell (1,782) mono_cell (222) virus (2,136) protein_family_or_group (8,002) protein_complex (2,394) protein_molecule (21,290) protein_subunit (942) protein_substructure (129) protein_domain_or_region (1,044) protein_other (97) peptide (521) amino_acid_monomer (784) DNA_family_or_group (332) DNA_molecule (664) DNA_substructure (2) DNA_domain_or_region (39) DNA_other (16) RNA_family_or_group (1,545) RNA_molecule (554) RNA_substructure (106) RNA_domain_or_region (8,237) RNA_other (48) polynucleotide (259) nucleotide (243) lipid (2,375) carbohydrate (99) other_organic_compound (4,113) body_part (461) tissue (706) cell_type (7,473) cell_component (679) cell_line (4,129) other_artificial_source (211) inorganic (258) atom (342) other (21,056) 79.2 KGENIA ProjectYue Wang2020-02-02Released
SPECIES800SPECIES 800 (S800): an abstract-based manually annotated corpus. S800 comprises 800 PubMed abstracts in which organism mentions were identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.00653903.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2020-02-02Released
jnlpba-st-trainingThe training data used in the task came from the GENIA version 3.02 corpus, This was formed from a controlled search on MEDLINE using the MeSH terms "human", "blood cells" and "transcription factors". From this search, 1,999 abstracts were selected and hand annotated according to a small taxonomy of 48 classes based on a chemical classification. Among the classes, 36 terminal classes were used to annotate the GENIA corpus. For the shared task only the classes protein, DNA, RNA, cell line and cell type were used. The first three incorporate several subclasses from the original taxonomy while the last two are interesting in order to make the task realistic for post-processing by a potential template filling application. The publication year of the training set ranges over 1990~1999.51.3 KGENIAYue Wang2020-02-02Released
GoldHamster1_DevelopmentDevelopment data for the GoldHamster1 corpus. It contain annotations for the proposed methods in abstracts.02020-02-25Released
GoldHamster1_TestTest data for the GoldHamster1 corpus. It contain annotations for the proposed methods in abstracts.02020-02-25Released
Goldhamster1_TrainTraining data for the GoldHamster1 corpus. It contain annotations for the proposed methods in abstracts.02020-02-25Released
GoldHamster1_PubTatorCentralPredictions from PubTator Central for the articles in the GoldHamster1 corpus.13.8 K2020-02-26Released
GoldHamster1_StructuredAbstractsSections from PubMed structured abstracts for the articles in the GoldHamster1 corpus.8242020-02-26Released
GoldHamster1_ArguminSciPredictions from ArguminSci for the abstracts in the GoldHamster1 corpus.10.2 K2020-02-27Released
GoldHamster1_CellosaurusPredictions of cell lines from Cellosaurus for the abstracts in the GoldHamster1 corpus.12.3 K2020-02-28Released
CORD-19_All_docsAll the documents in the whole CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.0Jin-Dong Kim2020-03-23Released
CORD-19_bioRxiv_medRxiv_subsetThe bioRxiv/medRxiv subset of the CORD-19 dataset: pre-prints that are not peer reviewed. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT. 0Jin-Dong Kim2020-03-23Released
CORD-19_Commercial_use_subsetThe Commercial use subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.0Jin-Dong Kim2020-03-23Released
CORD-19_Custom_license_subsetThe Custom license subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.0Jin-Dong Kim2020-03-23Released
CORD-19_Non-commercial_use_subsetThe Non commercial use subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.0Jin-Dong Kim2020-03-23Released
NameT# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 369 show all
LocText2.29 KGoldberg et alShrikant Vinchurkar2020-02-01Released
PIR-corpus25.52 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2020-02-01Released
BioLarkPubmedHPO7.24 KTudor Grozasimon2020-02-01Released
DisGeNET5_variant_disease144 KIBI GroupYue Wang2020-02-01Released
DisGeNET5_gene_disease2.04 MIBI GroupYue Wang2020-02-02Released
GENIAcorpus79.2 KGENIA ProjectYue Wang2020-02-02Released
SPECIES8003.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2020-02-02Released
jnlpba-st-training51.3 KGENIAYue Wang2020-02-02Released
GoldHamster1_Development02020-02-25Released
GoldHamster1_Test02020-02-25Released
Goldhamster1_Train02020-02-25Released
GoldHamster1_PubTatorCentral13.8 K2020-02-26Released
GoldHamster1_StructuredAbstracts8242020-02-26Released
GoldHamster1_ArguminSci10.2 K2020-02-27Released
GoldHamster1_Cellosaurus12.3 K2020-02-28Released
CORD-19_All_docs0Jin-Dong Kim2020-03-23Released
CORD-19_bioRxiv_medRxiv_subset0Jin-Dong Kim2020-03-23Released
CORD-19_Commercial_use_subset0Jin-Dong Kim2020-03-23Released
CORD-19_Custom_license_subset0Jin-Dong Kim2020-03-23Released
CORD-19_Non-commercial_use_subset0Jin-Dong Kim2020-03-23Released