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NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 208 show all
bionlp-st-ge-2016-uniprotUniProt protein annotation to the benchmark data set of BioNLP-ST 2016 GE task: reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test). The annotations are produced based on a dictionary which is semi-automatically compiled for the 34 full paper articles included in the benchmark data set (20 in the reference data set + 14 in the test data set). For detailed information about BioNLP-ST GE 2016 task data sets, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test). 16.2 KDBCLSJin-Dong Kim2016-05-22Beta
Ab3P-abbreviationsThis corpus was developed during the creation of the Ab3P abbreviation definition identification tool. It includes 1250 manually annotated MEDLINE records. This gold standard includes 1221 abbreviation-definition pairs. Abbreviation definition identification based on automatic precision estimates Sunghwan Sohn, Donald C Comeau, Won Kim and W John Wilbur BMC Bioinformatics20089:402 DOI: 10.1186/1471-2105-9-4022.34 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2016-07-29Beta
PubCasesHPOHPO annotation in PubCases3.2 MToyofumi Fujiwara2017-09-06Beta
PubCasesORDOORDO annotation in PubCases869 KToyofumi Fujiwara2017-09-14Beta
PubmedHPOHuman phenotype annotation to PubMed abstracts, based on the HPO ontology12.4 MTudor Grozatudor2017-10-11Beta
QFMC_MEDLINEQuaero French Medical Corpus: Annotation of MEDLINE titles5.97 KAurélie NévéolPierre Zweigenbaum2018-01-24Beta
IMDB-NLPAnnotations for chunking and semantic role labeling based on in-memory databases.02016-05-06Uploading
AnEM_full-texts250 documents selected randomly from full-text papers Entity types: organism subdivision, anatomical system, organ, multi-tissue structure, tissue, cell, developing anatomical structure, cellular component, organism substance, immaterial anatomical entity and pathological formation Together with AnEM_abstracts, it is probably the largest manually annotated corpus on anatomical entities.689NaCTeMYue Wang2016-07-27Uploading
CoGe_Citation_AnnotationsAnnotated PMC abstracts+full articles, that cite the "CoGe" papers (PMID: 18952863, 18269575). Total Num Citations: 165 Total Num Unique Citations: 141 Total Num Abstracts: 165 Total Num Whole Articles: 165 0Heather Lenthclent2016-10-11Uploading
GENIAcorpus multi_cell (1,782) mono_cell (222) virus (2,136) protein_family_or_group (8,002) protein_complex (2,394) protein_molecule (21,290) protein_subunit (942) protein_substructure (129) protein_domain_or_region (1,044) protein_other (97) peptide (521) amino_acid_monomer (784) DNA_family_or_group (332) DNA_molecule (664) DNA_substructure (2) DNA_domain_or_region (39) DNA_other (16) RNA_family_or_group (1,545) RNA_molecule (554) RNA_substructure (106) RNA_domain_or_region (8,237) RNA_other (48) polynucleotide (259) nucleotide (243) lipid (2,375) carbohydrate (99) other_organic_compound (4,113) body_part (461) tissue (706) cell_type (7,473) cell_component (679) cell_line (4,129) other_artificial_source (211) inorganic (258) atom (342) other (21,056) 78.5 KGENIA ProjectYue Wang2018-06-21Uploading
tagtogOpenAccess annotations coming from tagtog.net0tagtogtagtog2015-02-23Developing
NFkB_GeneIDAssignment of Entrez Gene IDs to the gene-references appearing in PMC full texts.2.31 KYo Shidahara2015-02-26Developing
新着論文レビュー新着論文レビューに関するアノテーション。10.8 KDatabase Center for Life ScienceYasunori Yamamoto2015-06-08Developing
KAIST_NLP_Annotation34.73 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation45.18 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation56.27 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation64.47 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation74.64 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation96.32 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation104.76 Kkaist_nlp2015-09-21Developing
NameT# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 208 show all
bionlp-st-ge-2016-uniprot16.2 KDBCLSJin-Dong Kim2016-05-22Beta
Ab3P-abbreviations2.34 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2016-07-29Beta
PubCasesHPO3.2 MToyofumi Fujiwara2017-09-06Beta
PubCasesORDO869 KToyofumi Fujiwara2017-09-14Beta
PubmedHPO12.4 MTudor Grozatudor2017-10-11Beta
QFMC_MEDLINE5.97 KAurélie NévéolPierre Zweigenbaum2018-01-24Beta
IMDB-NLP02016-05-06Uploading
AnEM_full-texts689NaCTeMYue Wang2016-07-27Uploading
CoGe_Citation_Annotations0Heather Lenthclent2016-10-11Uploading
GENIAcorpus78.5 KGENIA ProjectYue Wang2018-06-21Uploading
tagtog0tagtogtagtog2015-02-23Developing
NFkB_GeneID2.31 KYo Shidahara2015-02-26Developing
新着論文レビュー10.8 KDatabase Center for Life ScienceYasunori Yamamoto2015-06-08Developing
KAIST_NLP_Annotation34.73 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation45.18 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation56.27 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation64.47 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation74.64 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation96.32 Kkaist_nlp2015-09-21Developing
KAIST_NLP_Annotation104.76 Kkaist_nlp2015-09-21Developing