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NameTDescription# Ann.AuthorMaintainerUpdated_at Status

341-360 / 556 show all
bionlp-st-ge-2016-reference-tees NER and event extraction produced by TEES (with the default GE11 model) for the 20 full papers used in the BioNLP 2016 GE task reference corpus.14.6 KNico Colic Nico Colic2023-11-29Released
semrep-sample Sample annotation of SemRep, produced by Rindflesch, et al. Rindflesch, T.C. and Fiszman, M. (2003). The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. Journal of Biomedical Informatics, 36(6):462-477.11.1 KRindflesch et al.Jin-Dong Kim2023-11-29Testing
CORD-19-sample-CHEBI 16Jin-Dong Kim2023-11-29Developing
bionlp-st-ge-2016-test It is the benchmark test data set of the BioNLP-ST 2016 GE task. It includes Genia-style event annotations to 14 full paper articles which are about NFκB proteins. For testing purpose, however, annotations are all blinded, which means users cannot see the annotations in this project. Instead, annotations in any other project can be compared to the hidden annotations in this project, then the annotations in the project will be automatically evaluated based on the comparison. A participant of GE task can get the evaluation of his/her result of automatic annotation, through following process: Create a new project. Import documents from the project, bionlp-st-2016-test-proteins to your project. Import annotations from the project, bionlp-st-2016-test-proteins to your project. At this point, you may want to compare you project to this project, the benchmark data set. It will show that protein annotations in your project is 100% correct, but other annotations, e.g., events, are 0%. Produce event annotations, using your system, upon the protein annotations. Upload your event annotations to your project. Compare your project to this project, to get evaluation. GE 2016 benchmark data set is provided as multi-layer annotations which include: bionlp-st-ge-2016-reference: benchmark reference data set bionlp-st-ge-2016-test: benchmark test data set (this project) bionlp-st-ge-2016-test-proteins: protein annotation to the benchmark test data set Following is supporting resources: bionlp-st-ge-2016-coref: coreference annotation bionlp-st-ge-2016-uniprot: Protein annotation with UniProt IDs. pmc-enju-pas: dependency parsing result produced by Enju UBERON-AE: annotation for anatomical entities as defined in UBERON ICD10: annotation for disease names as defined in ICD10 GO-BP: annotation for biological process names as defined in GO GO-CC: annotation for cellular component names as defined in GO A SPARQL-driven search interface is provided at http://bionlp.dbcls.jp/sparql.7.99 KDBCLSJin-Dong Kim2023-11-29Released
bionlp-st-ge-2016-test-tees NER and event extraction produced by TEES (with the default GE11 model) for the 14 full papers used in the BioNLP 2016 GE task test corpus.9.17 KNico ColicNico Colic2023-11-29Released
craft-ca-core-dev Development data for CRAFT CA shared task, core concepts only. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core" set. See the task description for details, but this set contains only annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation. (That is to say, it does not contain any annotations to extension classes).59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
BioNLP16_DUT 6.5 KMessiy2023-11-29Testing
HZAU_wangshuguang_Just-for-fun 4wangshuguangwangshuguang2023-11-29Testing
LitCovid-PD-GlycoEpitope 999Jin-Dong Kim2023-11-29Developing
ngly1-sample4 18Nuria2023-11-29
2015-BEL-Sample An attempt to upload 295 BEL statements, i.e. the sample set used for the 2015 BioCreative challenge. 58Fabio RinaldiFabio Rinaldi2023-11-29Testing
21k_plant_trait_mention 333 Kxzyao2023-11-29Testing
AGAC-COVID-19 14xiajingbo2023-11-29
AGCA_Sue Active Gene Annotation Corpus for the Application in Drug Repurposing Discovery0Jingbo Xia, Xuan Qin, Kaiyin Zhou2023-11-29Developing
testing testing0ewha-bio2023-11-29Testing
Training_Data_Russian_ru_en 0wmtbio2023-11-29Developing
RELISH-DB Abstracts contained in the data of the RELISH-DB (https://relishdb.ict.griffith.edu.au) made available for download here. Data was downloaded from here: https://figshare.com/projects/RELISH-DB/60095 Related publication: https://academic.oup.com/database/article/doi/10.1093/database/baz085/5608006#20072202302023-11-29Released
testing_230112 2eatfish2023-11-29Testing
LitCovid-sample-PD-HP 211Jin-Dong Kim2023-11-29Testing
NGLY1-deficiency A collection of PubMed abstracts that may be related to NGLY1 deficiency.60.5 KJin-Dong Kim2023-11-29Developing
NameT# Ann.AuthorMaintainerUpdated_at Status

341-360 / 556 show all
bionlp-st-ge-2016-reference-tees 14.6 KNico Colic Nico Colic2023-11-29Released
semrep-sample 11.1 KRindflesch et al.Jin-Dong Kim2023-11-29Testing
CORD-19-sample-CHEBI 16Jin-Dong Kim2023-11-29Developing
bionlp-st-ge-2016-test 7.99 KDBCLSJin-Dong Kim2023-11-29Released
bionlp-st-ge-2016-test-tees 9.17 KNico ColicNico Colic2023-11-29Released
craft-ca-core-dev 59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
BioNLP16_DUT 6.5 KMessiy2023-11-29Testing
HZAU_wangshuguang_Just-for-fun 4wangshuguangwangshuguang2023-11-29Testing
LitCovid-PD-GlycoEpitope 999Jin-Dong Kim2023-11-29Developing
ngly1-sample4 18Nuria2023-11-29
2015-BEL-Sample 58Fabio RinaldiFabio Rinaldi2023-11-29Testing
21k_plant_trait_mention 333 Kxzyao2023-11-29Testing
AGAC-COVID-19 14xiajingbo2023-11-29
AGCA_Sue 0Jingbo Xia, Xuan Qin, Kaiyin Zhou2023-11-29Developing
testing 0ewha-bio2023-11-29Testing
Training_Data_Russian_ru_en 0wmtbio2023-11-29Developing
RELISH-DB 02023-11-29Released
testing_230112 2eatfish2023-11-29Testing
LitCovid-sample-PD-HP 211Jin-Dong Kim2023-11-29Testing
NGLY1-deficiency 60.5 KJin-Dong Kim2023-11-29Developing