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NameTDescription# Ann.AuthorMaintainerUpdated_at Status

1-20 / 185 show all
LODQA0Michel Dumontiermicheldumontier2015-02-20Testing
Micro assertion extract11Shinobu Okamotosynobu2015-02-20Testing
Find2ERFind the Findings of Enzymatic Reaction0Akihiro KamedaAkihiro Kameda2015-02-20Testing
tagtogOpenAccess annotations coming from tagtog.net0tagtogtagtog2015-02-23Developing
CoMAGCIn order to access the large amount of information in biomedical literature about genes implicated in various cancers both efficiently and accurately, the aid of text mining (TM) systems is invaluable. Current TM systems do target either gene-cancer relations or biological processes involving genes and cancers, but the former type produces information not comprehensive enough to explain how a gene affects a cancer, and the latter does not provide a concise summary of gene-cancer relations. In order to support the development of TM systems that are specifically targeting gene-cancer relations but are still able to capture complex information in biomedical sentences, we publish CoMAGC, a corpus with multi- faceted annotations of gene-cancer relations. In CoMAGC, a piece of annotation is composed of four semantically orthogonal concepts that together express 1) how a gene changes, 2) how a cancer changes and 3) the causality between the gene and the cancer. The multi-faceted annotations are shown to have high inter-annotator agreement. In addition, the annotations in CoMAGC allow us to infer the prospective roles of genes in cancers and to classify the genes into three classes according to the inferred roles. We encode the mapping between multi-faceted annotations and gene classes into 10 inference rules. The inference rules produce results with high accuracy as measured against human annotations. CoMAGC consists of 821 sentences on prostate, breast and ovarian cancers. Currently, the corpus deals with changes in gene expression levels among other types of gene changes.1.53 KLee et alHee-Jin Lee2015-02-24Released
NFkB_GeneIDAssignment of Entrez Gene IDs to the gene-references appearing in PMC full texts.2.31 KYo Shidahara2015-02-26Developing
EVEX-test104 KSampo Pyysalospyysalo2015-02-26Testing
2015-BEL-SampleAn attempt to upload 295 BEL statements, i.e. the sample set used for the 2015 BioCreative challenge. 58Fabio RinaldiFabio Rinaldi2015-02-26Testing
EVEX-test-2103 KSampo Pyysalospyysalo2015-02-27Testing
EVEX-test-366.7 KSampo Pyysalospyysalo2015-02-27Testing
BLAH2015_Annotations_test_51.34 Knestoralvaronestoralvaro2015-03-10Testing
BLAH2015_Annotations_Adderall0nestoralvaronestoralvaro2015-03-15Testing
CHEMDNER-training-testThe training subset of the CHEMDNER corpus29.4 KMartin Krallinger et al.Jin-Dong Kim2015-03-23Testing
新着論文レビュー新着論文レビューに関するアノテーション。10.8 KDatabase Center for Life ScienceYasunori Yamamoto2015-06-08Developing
PGDBj_disease_curation1disease curation test348ichihara_hisakoichihara_hisako2015-06-23Testing
traitCurationTest_ichiharatestProject1508064ichihara_hisakoHisako Ichihara2015-08-06Testing
NCBIDiseaseCorpusThe NCBI disease corpus is fully annotated at the mention and concept level to serve as a research resource for the biomedical natural language processing community.6.88 KRezarta Islamaj Doğan,Robert Leaman,Zhiyong LuChih-Hsuan Wei2015-08-06Released
tmVarCorpusWei C-H, Harris BR, Kao H-Y, Lu Z (2013) tmVar: A text mining approach for extracting sequence variants in biomedical literature, Bioinformatics, 29(11) 1433-1439, doi:10.1093/bioinformatics/btt156.1.43 KChih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong LuChih-Hsuan Wei2015-08-06Released
Trait curationProject for trait curation in PGDBj479Sachiko ShirasawaSachiko Shirasawa2015-08-25Testing
Trait_curation150825Trait curation0Sachiko_ShirasawaSachiko Shirasawa2015-08-31Testing
NameT# Ann.AuthorMaintainerUpdated_at Status

1-20 / 185 show all
LODQA0Michel Dumontiermicheldumontier2015-02-20Testing
Micro assertion extract11Shinobu Okamotosynobu2015-02-20Testing
Find2ER0Akihiro KamedaAkihiro Kameda2015-02-20Testing
tagtog0tagtogtagtog2015-02-23Developing
CoMAGC1.53 KLee et alHee-Jin Lee2015-02-24Released
NFkB_GeneID2.31 KYo Shidahara2015-02-26Developing
EVEX-test104 KSampo Pyysalospyysalo2015-02-26Testing
2015-BEL-Sample58Fabio RinaldiFabio Rinaldi2015-02-26Testing
EVEX-test-2103 KSampo Pyysalospyysalo2015-02-27Testing
EVEX-test-366.7 KSampo Pyysalospyysalo2015-02-27Testing
BLAH2015_Annotations_test_51.34 Knestoralvaronestoralvaro2015-03-10Testing
BLAH2015_Annotations_Adderall0nestoralvaronestoralvaro2015-03-15Testing
CHEMDNER-training-test29.4 KMartin Krallinger et al.Jin-Dong Kim2015-03-23Testing
新着論文レビュー10.8 KDatabase Center for Life ScienceYasunori Yamamoto2015-06-08Developing
PGDBj_disease_curation1348ichihara_hisakoichihara_hisako2015-06-23Testing
traitCurationTest_ichihara4ichihara_hisakoHisako Ichihara2015-08-06Testing
NCBIDiseaseCorpus6.88 KRezarta Islamaj Doğan,Robert Leaman,Zhiyong LuChih-Hsuan Wei2015-08-06Released
tmVarCorpus1.43 KChih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong LuChih-Hsuan Wei2015-08-06Released
Trait curation479Sachiko ShirasawaSachiko Shirasawa2015-08-25Testing
Trait_curation1508250Sachiko_ShirasawaSachiko Shirasawa2015-08-31Testing