| Grays_part2 | | Osteology w/o 21 | 8.63 K | | okubo | 2023-11-29 | Testing | |
| Grays_part2_test | | | 8.57 K | | Jin-Dong Kim | 2023-11-29 | Testing | |
| Grays_part1_test | | | 0 | | Jin-Dong Kim | 2023-11-29 | Testing | |
| LitCovid-PubTator-s | | | 196 | | Jin-Dong Kim | 2023-11-29 | | |
| LitCoin-Disease-Tuning-1 | | Annotator=PD-MeSH2022_C_F03_plus_allFN-B | 6.98 K | | yucca | 2023-11-29 | | |
| silkworm_test | | test project | 457 | | yaguchi | 2023-11-29 | Testing | |
| LitCovid-PD-MONDO-v1 | | PubDictionaries annotation for disease terms - updated at 2020-04-20
It is based on MONDO Version 2020-04-20.
The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here.
Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved. | 13.4 K | | Jin-Dong Kim | 2023-11-29 | Released | |
| LitCoin-PubTator-for-Tuning | | A set of randomly selected PubMed articles with PubTator annotation.
The labels of PubTator annotations are converted to corresponding labels for LitCoin as follows:
'Gene' -> 'GeneOrGeneProduct',
'Disease' -> 'DiseaseOrPhenotypicFeature',
'Chemical' -> 'ChemicalEntity'
'Species' -> 'OrganismTaxon'
'Mutation' -> 'SequenceVariant'
'CellLine' -> 'CellLine' | 14.2 K | | Jin-Dong Kim | 2023-11-29 | | |
| sonoma | | _ | 19.3 K | Standigm | | 2023-11-24 | Testing | |
| LitCoin-PubTator_CellLine | | | 388 | | Yasunori Yamamoto | 2023-11-29 | Testing | |
| CORD-19-sample-HP | | | 39 | | Jin-Dong Kim | 2023-11-27 | Developing | |
| LitCoin-Disease-MeSH | | MeSH C and F03, plus false negatives that appear in two or more documents in LitCoin-entities | 3.56 K | | yucca | 2023-11-29 | Testing | |
| LitCovid-sample-HP | | | 0 | | Jin-Dong Kim | 2023-11-29 | Testing | |
| LitCovid-sample-GO-BP | | | 691 | | Jin-Dong Kim | 2023-11-29 | Testing | |
| Goldhamster2_Cellosaurus | | | 27.5 K | | zebet | 2023-11-29 | Developing | |
| LitCovid-sample-PD-IDO | | | 1.27 K | | Jin-Dong Kim | 2023-11-28 | Beta | |
| PubMed-French-test | | A collection of PubMed abstract written in French | 0 | | Jin-Dong Kim | 2023-11-29 | Developing | |
| LitCovid-sample-Pubtator | | | 3.86 K | | Jin-Dong Kim | 2023-11-28 | Uploading | |
| test_HZAU_BioNLP | | | 274 | | AikoHIRAKI | 2023-11-29 | Testing | |
| ENG_RE | | Entities and relations annotations from the following ontologies: Disease Ontology ('DO'), Gene Ontology ('GO'), Human Phenotype Ontology ('HPO'), and ChEBI ontology ('CHEBI'). | 224 | Diana Sousa | dpavot | 2023-11-29 | Developing | |
