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Projects

Name TDescription# Ann.AuthorMaintainerUpdated_atStatus

1-20 / 214 show all
123123123123123123120yaoxinzhi2018-04-08Released
2015-BEL-SampleAn attempt to upload 295 BEL statements, i.e. the sample set used for the 2015 BioCreative challenge. 58Fabio RinaldiFabio Rinaldi2015-02-26Testing
2015-BEL-Sample-2The 295 BEL statements for sample set used for the 2015 BioCreative challenge.11.4 KFabio RinaldiNico Colic2016-05-25Released
Ab3P-abbreviationsThis corpus was developed during the creation of the Ab3P abbreviation definition identification tool. It includes 1250 manually annotated MEDLINE records. This gold standard includes 1221 abbreviation-definition pairs. Abbreviation definition identification based on automatic precision estimates Sunghwan Sohn, Donald C Comeau, Won Kim and W John Wilbur BMC Bioinformatics20089:402 DOI: 10.1186/1471-2105-9-4022.34 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2016-07-29Beta
acggdb_ggdb0nfujita2018-02-09
AGAC_round2_1111Nie Shanghuixiajingbo2018-11-08Released
AGAC_round2_2170Ren yuxinxiajingbo2018-11-14Released
AGAC_round2_3123wangyuxingxiajingbo2018-11-10Released
AGCA_SueActive Gene Annotation Corpus for the Application in Drug Repurposing Discovery0Jingbo Xia, Xuan Qin, Kaiyin Zhou2017-11-13Developing
AIMedThe AIMed corpus is one of the most widely used corpora for protein-protein interaction extraction. The protein annotations are either parts of the protein interaction annotations, or are uninvolved in any protein interaction annotation. Publication: http://www.cs.utexas.edu/~ml/papers/bionlp-aimed-04.pdf4.04 KThe University of Texas at AustinYue Wang2017-04-14Testing
AllieAn annotation set of abbreviations and expanded forms extracted from PubMed/MEDLINE by machines.8.7 MDatabase Center for Life ScienceYasunori Yamamoto2017-11-20Developing
AlvisNLP-Async-TestTest for the asynchronous AlvisNLP/ML annotator family.0Robert Bossyrbossy2017-04-07Testing
AlvisNLP-TestProject for testing AlviNLP PubAnnotation server during BLAH3.17Bibliome2017-01-20Testing
AnEM_abstracts250 documents selected randomly from citation abstracts Entity types: organism subdivision, anatomical system, organ, multi-tissue structure, tissue, cell, developing anatomical structure, cellular component, organism substance, immaterial anatomical entity and pathological formation Together with AnEM_full-texts, it is probably the largest manually annotated corpus on anatomical entities.1.95 KNaCTeMYue Wang2016-06-07Released
AnEM_full-texts250 documents selected randomly from full-text papers Entity types: organism subdivision, anatomical system, organ, multi-tissue structure, tissue, cell, developing anatomical structure, cellular component, organism substance, immaterial anatomical entity and pathological formation Together with AnEM_abstracts, it is probably the largest manually annotated corpus on anatomical entities.689NaCTeMYue Wang2016-07-27Uploading
Annotation-Euglena-Enzymes0Shuichi Kawashima2016-06-13Developing
bayabanalee7Nakyolee2017-07-13
BioASQ-samplecollection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2015-10-13Testing
BioLarkPubmedHPO228 abstracts manually annotated with Human Phenotype Ontology (HPO) concepts and harmonized by three curators, which can be used as a reference standard for free text annotation of human phenotypes. For more info, please see Groza et al. "Automatic concept recognition using the human phenotype ontology reference and test suite corpora", 2015.7.24 KTudor Grozasimon2017-03-28Released
BioMedLATAnnotation of 643 questions from BioASQ with the Lexical Answer Type (LAT) and headword.02016-09-23Developing
Name T# Ann.AuthorMaintainerUpdated_atStatus

1-20 / 214 show all
123123123120yaoxinzhi2018-04-08Released
2015-BEL-Sample58Fabio RinaldiFabio Rinaldi2015-02-26Testing
2015-BEL-Sample-211.4 KFabio RinaldiNico Colic2016-05-25Released
Ab3P-abbreviations2.34 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2016-07-29Beta
acggdb_ggdb0nfujita2018-02-09
AGAC_round2_1111Nie Shanghuixiajingbo2018-11-08Released
AGAC_round2_2170Ren yuxinxiajingbo2018-11-14Released
AGAC_round2_3123wangyuxingxiajingbo2018-11-10Released
AGCA_Sue0Jingbo Xia, Xuan Qin, Kaiyin Zhou2017-11-13Developing
AIMed4.04 KThe University of Texas at AustinYue Wang2017-04-14Testing
Allie8.7 MDatabase Center for Life ScienceYasunori Yamamoto2017-11-20Developing
AlvisNLP-Async-Test0Robert Bossyrbossy2017-04-07Testing
AlvisNLP-Test17Bibliome2017-01-20Testing
AnEM_abstracts1.95 KNaCTeMYue Wang2016-06-07Released
AnEM_full-texts689NaCTeMYue Wang2016-07-27Uploading
Annotation-Euglena-Enzymes0Shuichi Kawashima2016-06-13Developing
bayaba7Nakyolee2017-07-13
BioASQ-sample0BioASQJin-Dong Kim2015-10-13Testing
BioLarkPubmedHPO7.24 KTudor Grozasimon2017-03-28Released
BioMedLAT02016-09-23Developing