> top > projects

Projects

NameTDescription# Ann. AuthorMaintainerUpdated_atStatus

361-380 / 556 show all
Colil Colil (Comments on Literature in Literature) is a search service for citation contexts utilized in the biomedical domain. Colil searches for a cited paper in the Colil database and then returns a list of the citation contexts for it and its relevant papers based on co-citations.3.34 KDBCLSToyofumi Fujiwara2023-11-28Testing
tees-test Random PMC document used for testing during the development of a RESTful TEES parsing web service.3.39 KNico ColicNico Colic2023-11-24Developing
bionlp-ost-19-BB-kb-train 3.45 Kldeleger2023-11-26Developing
Test-merged-2 3.51 Kadmin2023-11-29
bionlp-ost-19-BB-rel-train 3.52 Kldeleger2023-11-28Developing
Lectin 3.52 Kangata2023-11-28
bionlp-ost-19-BB-kb-ner-train 3.56 Kldeleger2023-11-28Developing
LitCoin-Disease-MeSH MeSH C and F03, plus false negatives that appear in two or more documents in LitCoin-entities3.56 Kyucca2023-11-29Testing
bionlp-ost-19-BB-rel-ner-train 3.62 Kldeleger2023-11-28Developing
GlyCosmos600-GlycoProteins GlycoProtein annotations were made using the glycoprotein-name dictionary on PubDictionaries: http://pubannotation.org/projects/GlyCosmos600-docs The documents were imported from the GlyCosmos600-docs project: http://pubannotation.org/projects/GlyCosmos600-docs3.68 KJin-Dong Kim2023-11-27Testing
SPECIES800 SPECIES 800 (S800): an abstract-based manually annotated corpus. S800 comprises 800 PubMed abstracts in which organism mentions were identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.00653903.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2023-11-28Released
LitCoin-MONDO_bioort2019 DiseaeseOrPhenotypicFeature3.72 KEisuke Dohi2023-11-29Testing
LitCoin-Chemical-MeSH-CHEBI ChemicalEntity: Annotated by PD-MeSH2022_CHEBI_tuned-B3.84 Kyucca2023-11-29Testing
silkworm_phenotype 3.86 Kshigen2023-11-29Developing
LitCovid-sample-Pubtator 3.86 KJin-Dong Kim2023-11-28Uploading
AIMed The AIMed corpus is one of the most widely used corpora for protein-protein interaction extraction. The protein annotations are either parts of the protein interaction annotations, or are uninvolved in any protein interaction annotation. Publication: http://www.cs.utexas.edu/~ml/papers/bionlp-aimed-04.pdf4.04 KThe University of Texas at AustinYue Wang2023-11-27Testing
LitCoin-MeSH-Disease-2 Flase Negative全部入れてみた4.08 Kyucca2023-11-29
GlycoBiology-Motifs 4.15 KJin-Dong Kim2023-11-29
LitCovid-PD-FMA-UBERON-v1 PubDictionaries annotation for anatomy terms - updated at 2020-04-20 Disease term annotation based on FMA and Uberon. Version 2020-04-20. The terms in FMA and Uberon are loaded in PubDictionaries (FMA and Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here for FMA and there for Uberon. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.4.3 KJin-Dong Kim2023-11-27Released
FirstAuthor_s_Plants For only Plants4.3 KAikoHIRAKI2023-11-29Testing
NameT# Ann. AuthorMaintainerUpdated_atStatus

361-380 / 556 show all
Colil 3.34 KDBCLSToyofumi Fujiwara2023-11-28Testing
tees-test 3.39 KNico ColicNico Colic2023-11-24Developing
bionlp-ost-19-BB-kb-train 3.45 Kldeleger2023-11-26Developing
Test-merged-2 3.51 Kadmin2023-11-29
bionlp-ost-19-BB-rel-train 3.52 Kldeleger2023-11-28Developing
Lectin 3.52 Kangata2023-11-28
bionlp-ost-19-BB-kb-ner-train 3.56 Kldeleger2023-11-28Developing
LitCoin-Disease-MeSH 3.56 Kyucca2023-11-29Testing
bionlp-ost-19-BB-rel-ner-train 3.62 Kldeleger2023-11-28Developing
GlyCosmos600-GlycoProteins 3.68 KJin-Dong Kim2023-11-27Testing
SPECIES800 3.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2023-11-28Released
LitCoin-MONDO_bioort2019 3.72 KEisuke Dohi2023-11-29Testing
LitCoin-Chemical-MeSH-CHEBI 3.84 Kyucca2023-11-29Testing
silkworm_phenotype 3.86 Kshigen2023-11-29Developing
LitCovid-sample-Pubtator 3.86 KJin-Dong Kim2023-11-28Uploading
AIMed 4.04 KThe University of Texas at AustinYue Wang2023-11-27Testing
LitCoin-MeSH-Disease-2 4.08 Kyucca2023-11-29
GlycoBiology-Motifs 4.15 KJin-Dong Kim2023-11-29
LitCovid-PD-FMA-UBERON-v1 4.3 KJin-Dong Kim2023-11-27Released
FirstAuthor_s_Plants 4.3 KAikoHIRAKI2023-11-29Testing