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NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

61-80 / 114 show all
LitCovid-TimeML 426 KJin-Dong Kim2020-04-28Developing
Goldhamster2_Cellosaurus 27.5 Kzebet2020-08-12Developing
tees-test Random PMC document used for testing during the development of a RESTful TEES parsing web service.467Nico ColicNico Colic2020-09-09Developing
LappsTest Project to test posting annotations directly from the Language Applications Grid2.67 KKeith Sudermanksuderman2020-09-18Developing
ICD10 Annotation for disease names as defined in ICD101.6 KDBCLSJin-Dong Kim2020-09-18Developing
UBERON-AE Annotation for anatomical entities based on the "Anatomical Entity" subtree of UBERON ontology. Annotations are automatically produced using PubDictionaries with threshold: 0.85.865 KDBCLSJin-Dong Kim2020-09-18Developing
pmc-enju-pas Predicate-argument structure annotation produced by Enju. This data set is initially produced as a supporting resource for BioNLP-ST 2016 GE task. As so, it currently includes the 34 full paper articles that are in the benchmark data sets of GE 2016 task, reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test), but will be extended to include more papers from the PubMed Central Open Access subset (PMCOA). 205 KDBCLSJin-Dong Kim2020-09-18Developing
Biotea NCBO annotation on full text for PMC articles. Currently including only a small set of 2811 articles corresponding to those supporting curated diesease-protein annotation from UniProt and with machine-processable full text.894 KL. Garcia2020-09-22Developing
LitCovid-PMC-OGER-BB Annotating PMC articles with OGER and BioBert, according to an hand-crafted Covid-specific dictionary and the 10 different CRAFT ontologies (http://bionlp-corpora.sourceforge.net/CRAFT/): Chemical Entities of Biological Interest (CHEBI), Cell Ontology (CL), Entrez Gene (UBERON), Gene Ontology (biological process (GO-BP), cellular component (GO-CC), and molecular function (GO-MF), NCBI Taxonomy (NCBITaxon), Protein Ontology (PR), Sequence Ontology (SO)17 KFabio RinaldiNico Colic2020-09-22Developing
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2015-10-13Testing
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2016-01-19Testing
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-GDGDB GDGDB-based annotation to GlycoBiology abstracts 2.46 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-GO GO-based annotation to GlycoBiology abstracts0Jin-Dong Kim2016-06-11Testing
EDAM-DFO annotation for EDAM terms for data, formats, and operations12.5 KJin-Dong Kim2016-09-21Testing
EDAM-topics annotation for EDAM topics11.6 KJin-Dong Kim2016-09-21Testing
Parkinson 54Jin-Dong Kim2017-03-11Testing
NameT# Ann.AuthorMaintainerUpdated_atStatus

61-80 / 114 show all
LitCovid-TimeML 426 KJin-Dong Kim2020-04-28Developing
Goldhamster2_Cellosaurus 27.5 Kzebet2020-08-12Developing
tees-test 467Nico ColicNico Colic2020-09-09Developing
LappsTest 2.67 KKeith Sudermanksuderman2020-09-18Developing
ICD10 1.6 KDBCLSJin-Dong Kim2020-09-18Developing
UBERON-AE 865 KDBCLSJin-Dong Kim2020-09-18Developing
pmc-enju-pas 205 KDBCLSJin-Dong Kim2020-09-18Developing
Biotea 894 KL. Garcia2020-09-22Developing
LitCovid-PMC-OGER-BB 17 KFabio RinaldiNico Colic2020-09-22Developing
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
BioASQ-sample 0BioASQJin-Dong Kim2015-10-13Testing
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
pubtator-sample 28Zhiyong LuJin-Dong Kim2016-01-19Testing
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-GDGDB 2.46 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-GO 0Jin-Dong Kim2016-06-11Testing
EDAM-DFO 12.5 KJin-Dong Kim2016-09-21Testing
EDAM-topics 11.6 KJin-Dong Kim2016-09-21Testing
Parkinson 54Jin-Dong Kim2017-03-11Testing