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NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 113 show all
GlycoConjugate-collection The PubMed entries (titles and abstracts) from the journal of GlycoConjugate0Jin-Dong Kim2018-02-09Developing
NGLY1-deficiency A collection of PubMed abstracts that may be related to NGLY1 deficiency.60.7 KJin-Dong Kim2018-12-28Developing
Preeclampsia A collection of titles and abstracts of "Preeclampsia"-related papers. They were extracted from PubMed using the MeSH term "Preeclampsia" and specifying the language to be "English, on 11th September, 2017. The texts were then annotated by PubDictionaries using the dictionary "Preeclampsia".58.9 Kcallahan_tiff2019-01-30Developing
preeclampsia_genes 17.9 KJin-Dong Kim2019-06-06Developing
Allie An annotation set of abbreviations and expanded forms extracted from PubMed/MEDLINE by machines.8.7 MDatabase Center for Life ScienceYasunori Yamamoto2019-06-06Developing
pubmed-enju-pas Annotating PubMed abstracts for predicate-argument structure (PAS). Enju 2.4.2 is used to automatically compute PAS.19.1 MEnjuJin-Dong Kim2019-08-16Developing
UseCases_PubTatorCentral Predictions from PubTator Central (https://www.ncbi.nlm.nih.gov/research/pubtator/) for the seven datasets and for four entity types (disease,chemical,species,cellline)0zebet2019-11-01Developing
UseCases_ArguminSci_Discourse Predictions from ArguminSci(http://lelystad.informatik.uni-mannheim.de/) for the seven datasets and for discourse categories7.12 Kzebet2019-11-01Developing
funRiceGenes-all 1.51 KPubDictionariesYue Wang2019-12-05Developing
funRiceGenes-exact 841Yue Wang2019-12-05Developing
CORD-19-sample-paragraphs 28Jin-Dong Kim2020-04-08Developing
CORD-19-sample-sentences 161Jin-Dong Kim2020-04-08Developing
CORD-19-sample-UBERON 54Jin-Dong Kim2020-04-08Developing
CORD-PICO Automatic annotation of the CORD-19 dataset with PICO categories. The corpus was automatically labeled with an LSTM-CRF model trained on human-annotated PubMed abstracts from https://github.com/bepnye/EBM-NLP. Currently, titles and abstracts only are annotated using Population, Intervention and Outcome labels, as well as more fine-grained labels such as Age, Drug, Mortality and others.69.6 KSimon Susterssuster2020-04-10Developing
CORD-19-sample-IDO 76Jin-Dong Kim2020-04-13Developing
Epistemic_Statements The goal of this work is to identify epistemic statements in the scientific literature. An epistemic statement is a statement of unknowns, hypotheses, speculations, uncertainties, including statements of claims, hypotheses, questions, explanations, future opportunities, surprises, issues, or concerns within a sentence. The unit of an epistemic statement is a sentence automatically parsed. The classification is binary - epistemic statement or not. We will label epistemic statements only and one can assume that if a statement is not labeled, then it is not an epistemic statement. The classifier is a CRF, trained on gold standard annotations of epistemic statements that are currently ongoing. We report an F-measure of 0.91 after 5-fold cross validation on a test set with 914 statements and an F-measure of 0.9 on a held out document with 130 statements. This project is still under development and is submitted to be used for the CovidLit project and associated Hackathon. Please contact Mayla if you have any questions.1.42 Mmboguslav2020-04-16Developing
CORD-19-sample-MONDO 113Jin-Dong Kim2020-04-18Developing
CORD-19-sample-HP 39Jin-Dong Kim2020-04-18Developing
CORD-19-sample-CHEBI 16Jin-Dong Kim2020-04-19Developing
CORD-19-sample-FMA-UBERON 61Jin-Dong Kim2020-04-19Developing
NameT# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 113 show all
GlycoConjugate-collection 0Jin-Dong Kim2018-02-09Developing
NGLY1-deficiency 60.7 KJin-Dong Kim2018-12-28Developing
Preeclampsia 58.9 Kcallahan_tiff2019-01-30Developing
preeclampsia_genes 17.9 KJin-Dong Kim2019-06-06Developing
Allie 8.7 MDatabase Center for Life ScienceYasunori Yamamoto2019-06-06Developing
pubmed-enju-pas 19.1 MEnjuJin-Dong Kim2019-08-16Developing
UseCases_PubTatorCentral 0zebet2019-11-01Developing
UseCases_ArguminSci_Discourse 7.12 Kzebet2019-11-01Developing
funRiceGenes-all 1.51 KPubDictionariesYue Wang2019-12-05Developing
funRiceGenes-exact 841Yue Wang2019-12-05Developing
CORD-19-sample-paragraphs 28Jin-Dong Kim2020-04-08Developing
CORD-19-sample-sentences 161Jin-Dong Kim2020-04-08Developing
CORD-19-sample-UBERON 54Jin-Dong Kim2020-04-08Developing
CORD-PICO 69.6 KSimon Susterssuster2020-04-10Developing
CORD-19-sample-IDO 76Jin-Dong Kim2020-04-13Developing
Epistemic_Statements 1.42 Mmboguslav2020-04-16Developing
CORD-19-sample-MONDO 113Jin-Dong Kim2020-04-18Developing
CORD-19-sample-HP 39Jin-Dong Kim2020-04-18Developing
CORD-19-sample-CHEBI 16Jin-Dong Kim2020-04-19Developing
CORD-19-sample-FMA-UBERON 61Jin-Dong Kim2020-04-19Developing