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NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

21-40 / 114 show all
LitCovid-OGER-BB Using OGER (www.ontogene.com) and Biobert to obtain annotations for 10 different vocabularies.308 KFabio RinaldiNico Colic2020-06-04Released
bionlp-st-ge-2016-reference-tees NER and event extraction produced by TEES (with the default GE11 model) for the 20 full papers used in the BioNLP 2016 GE task reference corpus.14.6 KNico Colic Nico Colic2020-09-13Released
bionlp-st-ge-2016-test-tees NER and event extraction produced by TEES (with the default GE11 model) for the 14 full papers used in the BioNLP 2016 GE task test corpus.9.17 KNico ColicNico Colic2020-09-18Released
bionlp-st-ge-2016-spacy-parsed Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 225 KNico ColicNico Colic2020-09-18Released
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.490 KUniversity of Colorado Anschutz Medical Campuscraft-st2020-09-21Released
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
PubCasesHPO HPO annotation in PubCases3.2 MToyofumi Fujiwara2017-09-06Beta
PubCasesORDO ORDO annotation in PubCases869 KToyofumi Fujiwara2017-09-14Beta
LitCovid-PAS-Enju Predicate-argument structure annotation produced by the Enju parser.125 KJin-Dong Kim2020-03-25Beta
PubmedHPO Human phenotype annotation to PubMed abstracts, based on the HPO ontology12.4 MTudor Grozatudor2020-04-01Beta
bionlp-st-ge-2016-uniprot UniProt protein annotation to the benchmark data set of BioNLP-ST 2016 GE task: reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test). The annotations are produced based on a dictionary which is semi-automatically compiled for the 34 full paper articles included in the benchmark data set (20 in the reference data set + 14 in the test data set). For detailed information about BioNLP-ST GE 2016 task data sets, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test). 16.2 KDBCLSJin-Dong Kim2020-09-18Beta
NEUROSES This corpus is composed of PubMed articles containing cognitive enhancers and anti-depressants drug mentions. The selected sentences are automatically annotated using the NCBO Annotator with the Chemical Entities of Biological Interest (CHEBI) and Phenotypic Quality Ontology (PATO) ontologies, we also produced annotations using PhenoMiner ontology via a dictionary-based tagger.2.14 Mnestoralvaro2020-09-18Beta
IMDB-NLP Annotations for chunking and semantic role labeling based on in-memory databases.02016-05-06Uploading
OryzaGP A dataset for Named Entity Recognition for rice gene29.1 KHuy Do and Pierre LarmandeYue Wang2019-03-13Uploading
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
uniprot-mouse Protein annotation based on UniProt11.5 KJin-Dong Kim2016-04-27Developing
PubMed-2017 abstracts published in 2017.0Jin-Dong Kim2017-09-01Developing
PubMed-2000 abstracts published in 2000.0Jin-Dong Kim2017-09-01Developing
GlycoGenes annotation for glyco-genes based on GGDB1.01 KJin-Dong Kim2017-09-15Developing
AGCA_Sue Active Gene Annotation Corpus for the Application in Drug Repurposing Discovery0Jingbo Xia, Xuan Qin, Kaiyin Zhou2017-11-13Developing
NameT# Ann.AuthorMaintainerUpdated_atStatus

21-40 / 114 show all
LitCovid-OGER-BB 308 KFabio RinaldiNico Colic2020-06-04Released
bionlp-st-ge-2016-reference-tees 14.6 KNico Colic Nico Colic2020-09-13Released
bionlp-st-ge-2016-test-tees 9.17 KNico ColicNico Colic2020-09-18Released
bionlp-st-ge-2016-spacy-parsed 225 KNico ColicNico Colic2020-09-18Released
craft-sa-dev 490 KUniversity of Colorado Anschutz Medical Campuscraft-st2020-09-21Released
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
PubCasesHPO 3.2 MToyofumi Fujiwara2017-09-06Beta
PubCasesORDO 869 KToyofumi Fujiwara2017-09-14Beta
LitCovid-PAS-Enju 125 KJin-Dong Kim2020-03-25Beta
PubmedHPO 12.4 MTudor Grozatudor2020-04-01Beta
bionlp-st-ge-2016-uniprot 16.2 KDBCLSJin-Dong Kim2020-09-18Beta
NEUROSES 2.14 Mnestoralvaro2020-09-18Beta
IMDB-NLP 02016-05-06Uploading
OryzaGP 29.1 KHuy Do and Pierre LarmandeYue Wang2019-03-13Uploading
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
uniprot-mouse 11.5 KJin-Dong Kim2016-04-27Developing
PubMed-2017 0Jin-Dong Kim2017-09-01Developing
PubMed-2000 0Jin-Dong Kim2017-09-01Developing
GlycoGenes 1.01 KJin-Dong Kim2017-09-15Developing
AGCA_Sue 0Jingbo Xia, Xuan Qin, Kaiyin Zhou2017-11-13Developing