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NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

21-40 / 119 show all
CORD-19-PD-UBERON PubDictionaries annotation for UBERON terms - updated at 2020-04-30 It is disease term annotation based on Uberon. The terms in Uberon are uploaded in PubDictionaries (Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.1.42 MJin-Dong Kim2020-04-30Released
LitCovid-PD-FMA-UBERON PubDictionaries annotation for anatomy terms - updated at 2020-04-20 Disease term annotation based on FMA and Uberon. Version 2020-04-20. The terms in FMA and Uberon are loaded in PubDictionaries (FMA and Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here for FMA and there for Uberon. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.4.29 KJin-Dong Kim2020-05-10Released
LitCovid-PD-MONDO PubDictionaries annotation for disease terms - updated at 2020-04-20 It is based on MONDO Version 2020-04-20. The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.13.4 KJin-Dong Kim2020-05-10Released
CORD-19-PD-HP PubDictionaries annotation for HP terms - updated at 2020-04-30 Disease term annotation based on HP. Version 2020-04-20. The terms in HP are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.1.15 MJin-Dong Kim2020-05-12Released
LitCovid-PD-HP PubDictionaries annotation for human phenotype terms - updated at 2020-04-20 Disease term annotation based on HP. Version 2020-04-20. The terms in HP are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.3.02 KJin-Dong Kim2020-05-25Released
LitCovid-OGER-BB Using OGER (www.ontogene.com) and Biobert to obtain annotations for 10 different vocabularies.223 KFabio RinaldiNico Colic2020-06-04Released
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
NEUROSES This corpus is composed of PubMed articles containing cognitive enhancers and anti-depressants drug mentions. The selected sentences are automatically annotated using the NCBO Annotator with the Chemical Entities of Biological Interest (CHEBI) and Phenotypic Quality Ontology (PATO) ontologies, we also produced annotations using PhenoMiner ontology via a dictionary-based tagger.2.15 Mnestoralvaro2016-02-24Beta
bionlp-st-ge-2016-uniprot UniProt protein annotation to the benchmark data set of BioNLP-ST 2016 GE task: reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test). The annotations are produced based on a dictionary which is semi-automatically compiled for the 34 full paper articles included in the benchmark data set (20 in the reference data set + 14 in the test data set). For detailed information about BioNLP-ST GE 2016 task data sets, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test). 16.2 KDBCLSJin-Dong Kim2016-05-22Beta
PubCasesHPO HPO annotation in PubCases3.2 MToyofumi Fujiwara2017-09-06Beta
PubCasesORDO ORDO annotation in PubCases869 KToyofumi Fujiwara2017-09-14Beta
LitCovid-PAS-Enju Predicate-argument structure annotation produced by the Enju parser.125 KJin-Dong Kim2020-03-25Beta
PubmedHPO Human phenotype annotation to PubMed abstracts, based on the HPO ontology12.4 MTudor Grozatudor2020-04-01Beta
IMDB-NLP Annotations for chunking and semantic role labeling based on in-memory databases.02016-05-06Uploading
OryzaGP A dataset for Named Entity Recognition for rice gene29.1 KHuy Do and Pierre LarmandeYue Wang2019-03-13Uploading
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
uniprot-mouse Protein annotation based on UniProt11.5 KJin-Dong Kim2016-04-27Developing
ICD10 Annotation for disease names as defined in ICD101.6 KDBCLSJin-Dong Kim2016-05-04Developing
tees-test Random PMC document used for testing during the development of a RESTful TEES parsing web service.467Nico ColicNico Colic2016-05-25Developing
PubMed-2017 abstracts published in 2017.0Jin-Dong Kim2017-09-01Developing
NameT# Ann.AuthorMaintainerUpdated_atStatus

21-40 / 119 show all
CORD-19-PD-UBERON 1.42 MJin-Dong Kim2020-04-30Released
LitCovid-PD-FMA-UBERON 4.29 KJin-Dong Kim2020-05-10Released
LitCovid-PD-MONDO 13.4 KJin-Dong Kim2020-05-10Released
CORD-19-PD-HP 1.15 MJin-Dong Kim2020-05-12Released
LitCovid-PD-HP 3.02 KJin-Dong Kim2020-05-25Released
LitCovid-OGER-BB 223 KFabio RinaldiNico Colic2020-06-04Released
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
NEUROSES 2.15 Mnestoralvaro2016-02-24Beta
bionlp-st-ge-2016-uniprot 16.2 KDBCLSJin-Dong Kim2016-05-22Beta
PubCasesHPO 3.2 MToyofumi Fujiwara2017-09-06Beta
PubCasesORDO 869 KToyofumi Fujiwara2017-09-14Beta
LitCovid-PAS-Enju 125 KJin-Dong Kim2020-03-25Beta
PubmedHPO 12.4 MTudor Grozatudor2020-04-01Beta
IMDB-NLP 02016-05-06Uploading
OryzaGP 29.1 KHuy Do and Pierre LarmandeYue Wang2019-03-13Uploading
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
uniprot-mouse 11.5 KJin-Dong Kim2016-04-27Developing
ICD10 1.6 KDBCLSJin-Dong Kim2016-05-04Developing
tees-test 467Nico ColicNico Colic2016-05-25Developing
PubMed-2017 0Jin-Dong Kim2017-09-01Developing