| LitCoin-GeneOrGeneProduct-v2 | | threshold = 0.93 | 8.98 K | | Jin-Dong Kim | 2023-11-29 | | |
| LitCoin-MONDO_bioort2019 | | DiseaeseOrPhenotypicFeature | 3.72 K | | Eisuke Dohi | 2023-11-29 | Testing | |
| LitCoin-MeSH-Disease-2 | | Flase Negative全部入れてみた | 4.08 K | | yucca | 2023-11-29 | | |
| LitCoin-PubTator-for-Tuning | | A set of randomly selected PubMed articles with PubTator annotation.
The labels of PubTator annotations are converted to corresponding labels for LitCoin as follows:
'Gene' -> 'GeneOrGeneProduct',
'Disease' -> 'DiseaseOrPhenotypicFeature',
'Chemical' -> 'ChemicalEntity'
'Species' -> 'OrganismTaxon'
'Mutation' -> 'SequenceVariant'
'CellLine' -> 'CellLine' | 14.2 K | | Jin-Dong Kim | 2023-11-29 | | |
| LitCoin-PubTator_CellLine | | | 388 | | Yasunori Yamamoto | 2023-11-29 | Testing | |
| LitCoin_CellLine | | CellLine | 113 | | Yasunori Yamamoto | 2023-11-29 | Developing | |
| LitCoin_Mondo_095 | | | 3.26 K | | Yasunori Yamamoto | 2023-11-29 | Testing | |
| GlyCosmos600-GlycanStructure | | | 97 | | Jin-Dong Kim | 2023-11-29 | Testing | |
| GlyCosmos600-GlycoGene3 | | | 0 | | angata | 2023-11-29 | Testing | |
| AxD_symptoms | | Symptoms of AxD from available case report and case series | 401 | | Eisuke Dohi | 2023-11-29 | Developing | |
| BLAH2015_Annotations_Adderall | | | 0 | nestoralvaro | nestoralvaro | 2023-11-29 | Testing | |
| CORD-19_All_docs | | All the documents in the whole CORD-19 dataset.
The documents in this project will be updated as the CORD-19 dataset grows.
See the COVID DATASET LICENSE AGREEMENT. | 0 | | Jin-Dong Kim | 2023-11-29 | Released | |
| CORD-19_Commercial_use_subset | | The Commercial use subset of the CORD-19 dataset.
The documents in this project will be updated as the CORD-19 dataset grows.
See the COVID DATASET LICENSE AGREEMENT. | 0 | | Jin-Dong Kim | 2023-11-29 | Released | |
| CORD-19_Non-commercial_use_subset | | The Non commercial use subset of the CORD-19 dataset.
The documents in this project will be updated as the CORD-19 dataset grows.
See the COVID DATASET LICENSE AGREEMENT. | 0 | | Jin-Dong Kim | 2023-11-29 | Released | |
| CORD-19_bioRxiv_medRxiv_subset | | The bioRxiv/medRxiv subset of the CORD-19 dataset: pre-prints that are not peer reviewed.
The documents in this project will be updated as the CORD-19 dataset grows.
See the COVID DATASET LICENSE AGREEMENT.
| 0 | | Jin-Dong Kim | 2023-11-29 | Released | |
| Test-GeneOrGeneProduct | | | 1.17 K | | Jin-Dong Kim | 2023-11-29 | | |
| GlycoBiology-FMA | | FMA ontology-based annotation to GlycoBiology abstracts | 96.3 K | | Jin-Dong Kim | 2023-11-29 | Testing | |
| bionlp-st-ge-2016-reference-tees | | NER and event extraction produced by TEES (with the default GE11 model) for the 20 full papers used in the BioNLP 2016 GE task reference corpus. | 14.6 K | Nico Colic | Nico Colic | 2023-11-29 | Released | |
| CORD-19-sample-CHEBI | | | 16 | | Jin-Dong Kim | 2023-11-29 | Developing | |
| bionlp-st-ge-2016-test-tees | | NER and event extraction produced by TEES (with the default GE11 model) for the 14 full papers used in the BioNLP 2016 GE task test corpus. | 9.17 K | Nico Colic | Nico Colic | 2023-11-29 | Released | |
